Author results

1BMD
  • Download 1bmd
  • View 1bmd
Molmil generated image of 1bmd
DETERMINANTS OF PROTEIN THERMOSTABILITY OBSERVED IN THE 1.9 ANGSTROMS CRYSTAL STRUCTURE OF MALATE DEHYDROGENASE FROM THE THERMOPHILIC BACTERIUM THERMUS FLAVUS
Descriptor:MALATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Kelly, C.A., Birktoft, J.J.
Deposit date:1992-11-10
Release date:1994-07-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Determinants of protein thermostability observed in the 1.9-A crystal structure of malate dehydrogenase from the thermophilic bacterium Thermus flavus.
Biochemistry, 32, 1993
1BDM
  • Download 1bdm
  • View 1bdm
Molmil generated image of 1bdm
THE STRUCTURE AT 1.8 ANGSTROMS RESOLUTION OF A SINGLE SITE MUTANT (T189I) OF MALATE DEHYDROGENASE FROM THERMUS FLAVUS WITH INCREASED ENZYMATIC ACTIVITY
Descriptor:MALATE DEHYDROGENASE, BETA-6-HYDROXY-1,4,5,6-TETRHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
Authors:Kelly, C.A., Birktoft, J.J.
Deposit date:1993-02-16
Release date:1994-12-20
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Determinants of protein thermostability observed in the 1.9-A crystal structure of malate dehydrogenase from the thermophilic bacterium Thermus flavus.
Biochemistry, 32, 1993
1BYV
  • Download 1byv
  • View 1byv
Molmil generated image of 1byv
GLYCOSYLATED EEL CALCITONIN
Descriptor:PROTEIN (CALCITONIN), N-ACETYL-D-GLUCOSAMINE
Authors:Hashimoto, Y., Toma, K., Nishikido, J., Yamamoto, K., Haneda, K., Inazu, T., Valentine, K.G., Opella, S.J.
Deposit date:1998-10-16
Release date:1998-10-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Effects of glycosylation on the structure and dynamics of eel calcitonin in micelles and lipid bilayers determined by nuclear magnetic resonance spectroscopy.
Biochemistry, 38, 1999
1BZB
  • Download 1bzb
  • View 1bzb
Molmil generated image of 1bzb
GLYCOSYLATED EEL CALCITONIN
Descriptor:PROTEIN (CALCITONIN), N-ACETYL-D-GLUCOSAMINE, ALPHA-D-MANNOSE
Authors:Hashimoto, Y., Toma, K., Nishikido, J., Yamamoto, K., Haneda, K., Inazu, T., Valentine, K., Opella, S.J.
Deposit date:1998-10-27
Release date:1998-11-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Effects of glycosylation on the structure and dynamics of eel calcitonin in micelles and lipid bilayers determined by nuclear magnetic resonance spectroscopy.
Biochemistry, 38, 1999
1BKU
  • Download 1bku
  • View 1bku
Molmil generated image of 1bku
EFFECTS OF GLYCOSYLATION ON THE STRUCTURE AND DYNAMICS OF EEL CALCITONIN, NMR, 10 STRUCTURES
Descriptor:CALCITONIN
Authors:Hashimoto, Y., Nishikido, J., Toma, K., Yamamoto, K., Haneda, K., Inazu, T., Valentine, K., Opella, S.J.
Deposit date:1998-07-13
Release date:1999-01-13
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Effects of glycosylation on the structure and dynamics of eel calcitonin in micelles and lipid bilayers determined by nuclear magnetic resonance spectroscopy.
Biochemistry, 38, 1999
1DBN
  • Download 1dbn
  • View 1dbn
Molmil generated image of 1dbn
MAACKIA AMURENSIS LEUKOAGGLUTININ (LECTIN) WITH SIALYLLACTOSE
Descriptor:PROTEIN (LEUKOAGGLUTININ), N-ACETYL-D-GLUCOSAMINE, O-SIALIC ACID, ...
Authors:Imberty, A., Gautier, C., Lescar, J., Loris, R.
Deposit date:1999-11-03
Release date:2000-06-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:An unusual carbohydrate binding site revealed by the structures of two Maackia amurensis lectins complexed with sialic acid-containing oligosaccharides.
J.Biol.Chem., 275, 2000
1GCO
  • Download 1gco
  • View 1gco
Molmil generated image of 1gco
CRYSTAL STRUCTURE OF GLUCOSE DEHYDROGENASE COMPLEXED WITH NAD+
Descriptor:GLUCOSE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Yamamoto, K., Kurisu, G., Kusunoki, M., Tabata, S., Urabe, I., Osaki, S.
Deposit date:2000-08-07
Release date:2001-02-28
Last modified:2018-06-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of glucose dehydrogenase from Bacillus megaterium IWG3 at 1.7 A resolution.
J.Biochem.(Tokyo), 129, 2001
1G6K
  • Download 1g6k
  • View 1g6k
Molmil generated image of 1g6k
CRYSTAL STRUCTURE OF GLUCOSE DEHYDROGENASE MUTANT E96A COMPLEXED WITH NAD+
Descriptor:GLUCOSE 1-DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Yamamoto, K., Kurisu, G., Kusunoki, M., Tabata, S., Urabe, I., Osaki, S.
Deposit date:2000-11-06
Release date:2003-08-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural analysis of stability-increasing mutants of glucose dehydrogenase
To be Published
1GEE
  • Download 1gee
  • View 1gee
Molmil generated image of 1gee
CRYSTAL STRUCTURE OF GLUCOSE DEHYDROGENASE MUTANT Q252L COMPLEXED WITH NAD+
Descriptor:GLUCOSE 1-DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Yamamoto, K., Kurisu, G., Kusunoki, M., Tabata, S., Urabe, I., Osaki, S.
Deposit date:2000-11-07
Release date:2003-08-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural analysis of stability-increasing mutants of glucose dehydrogenase
To be Published
1Y7T
  • Download 1y7t
  • View 1y7t
Molmil generated image of 1y7t
CRYSTAL STRUCTURE OF NAD(H)-DEPENENT MALATE DEHYDROGENASE COMPLEXED WITH NADPH
Descriptor:Malate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Authors:Tomita, T., Fushinobu, S., Kuzuyama, T., Nishiyama, M.
Deposit date:2004-12-10
Release date:2005-08-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of NAD-dependent malate dehydrogenase complexed with NADP(H)
Biochem.Biophys.Res.Commun., 334, 2005
2CVQ
  • Download 2cvq
  • View 2cvq
Molmil generated image of 2cvq
CRYSTAL STRUCTURE OF NAD(H)-DEPENDENT MALATE DEHYDROGENASE COMPLEXED WITH NADPH
Descriptor:Malate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Authors:Tomita, T., Fushinobu, S., Kuzuyama, T., Nishiyama, M.
Deposit date:2005-06-13
Release date:2005-08-02
Last modified:2013-11-20
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Crystal structure of NAD-dependent malate dehydrogenase complexed with NADP(H)
Biochem.Biophys.Res.Commun., 334, 2005
1WZE
  • Download 1wze
  • View 1wze
Molmil generated image of 1wze
STRUCTURAL BASIS FOR ALTERATION OF COFACTOR SPECIFICITY OF MALATE DEHYDROGENASE FROM THERMUS FLAVUS
Descriptor:Malate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Tomita, T., Fushinobu, S., Kuzuyama, T., Nishiyama, M.
Deposit date:2005-03-04
Release date:2006-03-14
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for alteration of cofactor specificity of malate dehydrogenase from Thermus flavus
to be published
1WZI
  • Download 1wzi
  • View 1wzi
Molmil generated image of 1wzi
STRUCTURAL BASIS FOR ALTERATION OF COFACTOR SPECIFICITY OF MALATE DEHYDROGENASE FROM THERMUS FLAVUS
Descriptor:Malate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Tomita, T., Fushinobu, S., Kuzuyama, T., Nishiyama, M.
Deposit date:2005-03-05
Release date:2006-03-14
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for alteration of cofactor specificity of malate dehydrogenase from Thermus flavus
to be published
2D4D
  • Download 2d4d
  • View 2d4d
Molmil generated image of 2d4d
THE CRYSTAL STRUCTURE OF HUMAN BETA2-MICROGLOBULIN, L39W W60F W95F MUTANT
Descriptor:Beta-2-microglobulin, SODIUM ION
Authors:Iwata, K., Matsuura, T., Nakagawa, A., Goto, Y.
Deposit date:2005-10-17
Release date:2006-08-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Conformation of Amyloid Fibrils of beta2-Microglobulin Probed by Tryptophan Mutagenesis
J.Biol.Chem., 281, 2006
2D4F
  • Download 2d4f
  • View 2d4f
Molmil generated image of 2d4f
THE CRYSTAL STRUCTURE OF HUMAN BETA2-MICROGLOBULIN
Descriptor:Beta-2-microglobulin, SODIUM ION
Authors:Iwata, K., Matsuura, T., Nakagawa, A., Goto, Y.
Deposit date:2005-10-18
Release date:2006-08-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Conformation of Amyloid Fibrils of beta2-Microglobulin Probed by Tryptophan Mutagenesis
J.Biol.Chem., 281, 2006
2D1V
  • Download 2d1v
  • View 2d1v
Molmil generated image of 2d1v
CRYSTAL STRUCTURE OF DNA-BINDING DOMAIN OF BACILLUS SUBTILIS YYCF
Descriptor:Transcriptional regulatory protein yycF
Authors:Okajima, T., Okada, A., Watanabe, T., Yamamoto, K., Tanizawa, K., Utsumi, R.
Deposit date:2005-09-01
Release date:2006-09-12
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Response regulator YycF essential for bacterial growth: X-ray crystal structure of the DNA-binding domain and its PhoB-like DNA recognition motif
Febs Lett., 582, 2008
2EAB
  • Download 2eab
  • View 2eab
Molmil generated image of 2eab
CRYSTAL STRUCTURE OF 1,2-A-L-FUCOSIDASE FROM BIFIDOBACTERIUM BIFIDUM (APO FORM)
Descriptor:Alpha-fucosidase, CALCIUM ION, 1,2-ETHANEDIOL, ...
Authors:Nagae, M., Tsuchiya, A., Katayama, T., Yamamoto, K., Wakatsuki, S., Kato, R.
Deposit date:2007-01-31
Release date:2007-04-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Structural basis on the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase (AFCA) from Bifidobacterium bifidum
J.Biol.Chem., 282, 2007
2EAC
  • Download 2eac
  • View 2eac
Molmil generated image of 2eac
CRYSTAL STRUCTURE OF 1,2-A-L-FUCOSIDASE FROM BIFIDOBACTERIUM BIFIDUM IN COMPLEX WITH DEOXYFUCONOJIRIMYCIN
Descriptor:Alpha-fucosidase, CALCIUM ION, (2S,3R,4S,5R)-2-METHYLPIPERIDINE-3,4,5-TRIOL
Authors:Nagae, M., Tsuchiya, A., Katayama, T., Yamamoto, K., Wakatsuki, S., Kato, R.
Deposit date:2007-01-31
Release date:2007-04-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis on the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase (AFCA) from Bifidobacterium bifidum
J.Biol.Chem., 282, 2007
2EAD
  • Download 2ead
  • View 2ead
Molmil generated image of 2ead
CRYSTAL STRUCTURE OF 1,2-A-L-FUCOSIDASE FROM BIFIDOBACTERIUM BIFIDUM IN COMPLEX WITH SUBSTRATE
Descriptor:Alpha-fucosidase, CALCIUM ION, BETA-D-GLUCOSE, ...
Authors:Nagae, M., Tsuchiya, A., Katayama, T., Yamamoto, K., Wakatsuki, S., Kato, R.
Deposit date:2007-01-31
Release date:2007-04-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structural basis on the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase (AFCA) from Bifidobacterium bifidum
J.Biol.Chem., 282, 2007
2EAE
  • Download 2eae
  • View 2eae
Molmil generated image of 2eae
CRYSTAL STRUCTURE OF 1,2-A-L-FUCOSIDASE FROM BIFIDOBACTERIUM BIFIDUM IN COMPLEXES WITH PRODUCTS
Descriptor:Alpha-fucosidase, ALPHA-L-FUCOSE, BETA-L-FUCOSE, ...
Authors:Nagae, M., Tsuchiya, A., Katayama, T., Yamamoto, K., Wakatsuki, S., Kato, R.
Deposit date:2007-01-31
Release date:2007-04-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis on the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase (AFCA) from Bifidobacterium bifidum
J.Biol.Chem., 282, 2007
2Z8D
  • Download 2z8d
  • View 2z8d
Molmil generated image of 2z8d
THE GALACTO-N-BIOSE-/LACTO-N-BIOSE I-BINDING PROTEIN (GL-BP) OF THE ABC TRANSPORTER FROM BIFIDOBACTERIUM LONGUM IN COMPLEX WITH LACTO-N-BIOSE
Descriptor:Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein, BETA-D-GALACTOSE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Suzuki, R., Wada, J., Katayama, T., Fushinobu, S.
Deposit date:2007-09-05
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and thermodynamic analyses of solute-binding Protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I.
J.Biol.Chem., 283, 2008
2Z8E
  • Download 2z8e
  • View 2z8e
Molmil generated image of 2z8e
THE GALACTO-N-BIOSE-/LACTO-N-BIOSE I-BINDING PROTEIN (GL-BP) OF THE ABC TRANSPORTER FROM BIFIDOBACTERIUM LONGUM IN COMPLEX WITH GALACTO-N-BIOSE
Descriptor:Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein, BETA-D-GALACTOSE, N-ACETYL-D-GALACTOSAMINE, ...
Authors:Suzuki, R., Wada, J., Katayama, T., Fushinobu, S.
Deposit date:2007-09-05
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural and thermodynamic analyses of solute-binding Protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I.
J.Biol.Chem., 283, 2008
2Z8F
  • Download 2z8f
  • View 2z8f
Molmil generated image of 2z8f
THE GALACTO-N-BIOSE-/LACTO-N-BIOSE I-BINDING PROTEIN (GL-BP) OF THE ABC TRANSPORTER FROM BIFIDOBACTERIUM LONGUM IN COMPLEX WITH LACTO-N-TETRAOSE
Descriptor:Galacto-N-biose/lacto-N-biose I transporter substrate-binding protein, BETA-D-GALACTOSE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Suzuki, R., Wada, J., Katayama, T., Fushinobu, S.
Deposit date:2007-09-05
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural and thermodynamic analyses of solute-binding Protein from Bifidobacterium longum specific for core 1 disaccharide and lacto-N-biose I.
J.Biol.Chem., 283, 2008
2VSR
  • Download 2vsr
  • View 2vsr
Molmil generated image of 2vsr
HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 9-(S)-HODE
Descriptor:PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA, (9S,10E,12Z)-9-hydroxyoctadeca-10,12-dienoic acid
Authors:Itoh, T., Fairall, L., Schwabe, J.W.R.
Deposit date:2008-04-29
Release date:2008-08-19
Last modified:2012-06-06
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural Basis for the Activation of Pparg by Oxidised Fatty Acids
Nat.Struct.Mol.Biol., 15, 2008
2VST
  • Download 2vst
  • View 2vst
Molmil generated image of 2vst
HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 13-(S)-HODE
Descriptor:PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA, (9Z,11E,13S)-13-hydroxyoctadeca-9,11-dienoic acid
Authors:Itoh, T., Fairall, L., Schwabe, J.W.R.
Deposit date:2008-04-29
Release date:2008-08-19
Last modified:2012-06-06
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural Basis for the Activation of Pparg by Oxidised Fatty Acids
Nat.Struct.Mol.Biol., 15, 2008