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1KGK
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DIRECT OBSERVATION OF A CYTOSINE ANALOG THAT FORMS FIVE HYDROGEN BONDS TO GUANOSINE; GUANYL G-CLAMP
Descriptor:5'-D(*GP*(GCK)P*GP*TP*AP*TP*AP*CP*GP*C)-3', METHOXY-ETHOXYL, SPERMINE (FULLY PROTONATED FORM)
Authors:Wilds, C.J., Maier, M.A., Tereshko, V., Manoharan, M., Egli, M.
Deposit date:2001-11-27
Release date:2001-12-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:Direct Observation of a Cytosine Analogue that Forms Five Hydrogen Bonds to Guanosine: Guanidino G-Clamp
Angew.Chem.Int.Ed.Engl., 41, 2002
1N1O
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CRYSTAL STRUCTURE OF A B-FORM DNA DUPLEX CONTAINING (L)-ALPHA-THREOFURANOSYL (3'-2') NUCLEOSIDES: A FOUR-CARBON SUGAR IS EASILY ACCOMMODATED INTO THE BACKBONE OF DNA
Descriptor:5'-D(*CP*GP*CP*GP*AP*AP*(TFT)P*TP*CP*GP*CP*G)-3', MAGNESIUM ION
Authors:Wilds, C.J., Wawrzak, Z., Krishnamurthy, R., Eschenmoser, A., Egli, M.
Deposit date:2002-10-18
Release date:2002-11-15
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal Structure of a B-Form DNA Duplex Containing (L)-alpha-Threofuranosyl (3'-->2') Nucleosides: A Four-Carbon Sugar Is Easily Accommodated into the Backbone of DNA
J.Am.Chem.Soc., 124, 2002
1VRO
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SELENIUM-ASSISTED NUCLEIC ACID CRYSTALLOGRAPHY: USE OF PHOSPHOROSELENOATES FOR MAD PHASING OF A DNA STRUCTURE
Descriptor:5'-D(*CP*(GMS)P*CP*GP*CP*G)-3', SPERMINE, MAGNESIUM ION
Authors:Wilds, C.J., Pattanayek, R., Pan, C., Wawrzak, Z., Egli, M.
Deposit date:2005-04-14
Release date:2005-04-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Selenium-Assisted Nucleic Acid Crystallography: Use of Phosphoroselenoates for MAD Phasing of a DNA Structure
J.Am.Chem.Soc., 124, 2002
1G2J
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RNA OCTAMER R(CCCP*GGGG) CONTAINING PHENYL RIBONUCLEOTIDE
Descriptor:5'-R(*CP*CP*CP*(PYY)P*GP*GP*GP*G)-3', CALCIUM ION
Authors:Minasov, G., Matulic-Adamic, J., Wilds, C.J., Haeberli, P., Usman, N., Beigelman, L., Egli, M.
Deposit date:2000-10-20
Release date:2000-12-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Crystal structure of an RNA duplex containing phenyl-ribonucleotides, hydrophobic isosteres of the natural pyrimidines.
RNA, 6, 2000
1I0F
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1.6 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-AMINOOXYETHYL THYMINE IN PLACE OF T6, BA-FORM
Descriptor:5'-D(*GP*CP*GP*TP*AP*(127)P*AP*CP*GP*C)-3', BARIUM ION
Authors:Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.
Deposit date:2001-01-29
Release date:2001-04-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Detection of alkali metal ions in DNA crystals using state-of-the-art X-ray diffraction experiments.
Nucleic Acids Res., 29, 2001
1I0G
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1.45 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-FLUOROETHYL THYMINE IN PLACE OF T6, MEDIUM NA-SALT
Descriptor:5'-D(*GP*CP*GP*TP*AP*(125)P*AP*CP*GP*C)-3', SODIUM ION
Authors:Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.
Deposit date:2001-01-29
Release date:2001-04-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Detection of alkali metal ions in DNA crystals using state-of-the-art X-ray diffraction experiments.
Nucleic Acids Res., 29, 2001
1I0J
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1.06 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-3'-METHYLENEPHOSPHONATE (T23) THYMINE IN PLACE OF T6, HIGH CS-SALT
Descriptor:5'-D(*GP*CP*GP*TP*AP*(T23)P*AP*CP*GP*C)-3', CESIUM ION
Authors:Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.
Deposit date:2001-01-29
Release date:2001-04-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.06 Å)
Cite:Detection of alkali metal ions in DNA crystals using state-of-the-art X-ray diffraction experiments.
Nucleic Acids Res., 29, 2001
1I0K
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1.05 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-[TRI(OXYETHYL)] THYMINE IN PLACE OF T6, MEDIUM CS-SALT
Descriptor:5'-D(*GP*CP*GP*TP*AP*(126)P*AP*CP*GP*C)-3', CESIUM ION
Authors:Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.
Deposit date:2001-01-29
Release date:2001-04-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Detection of alkali metal ions in DNA crystals using state-of-the-art X-ray diffraction experiments.
Nucleic Acids Res., 29, 2001
1I0M
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1.05 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-FLUOROETHYL THYMINE IN PLACE OF T6, HIGH RB-SALT
Descriptor:5'-D(*GP*CP*GP*TP*AP*(125)P*AP*CP*GP*C)-3', RUBIDIUM ION
Authors:Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.
Deposit date:2001-01-29
Release date:2001-04-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Detection of alkali metal ions in DNA crystals using state-of-the-art X-ray diffraction experiments.
Nucleic Acids Res., 29, 2001
1I0N
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1.3 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-[TRI(OXYETHYL)] THYMINE IN PLACE OF T6, MEDIUM RB-SALT
Descriptor:5'-D(*GP*CP*GP*TP*AP*(126)P*AP*CP*GP*C)-3', RUBIDIUM ION
Authors:Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.
Deposit date:2001-01-29
Release date:2001-04-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Detection of alkali metal ions in DNA crystals using state-of-the-art X-ray diffraction experiments.
Nucleic Acids Res., 29, 2001
1I0O
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1.6 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-3'-METHYLENEPHOSPHONATE THYMINE IN PLACE OF T6, HIGH K-SALT
Descriptor:5'-D(*GP*CP*GP*TP*AP*(T23)P*AP*CP*GP*C)-3', POTASSIUM ION
Authors:Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.
Deposit date:2001-01-29
Release date:2001-04-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Detection of alkali metal ions in DNA crystals using state-of-the-art X-ray diffraction experiments
Nucleic Acids Res., 29, 2001
1I0P
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1.3 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-[TRI(OXYETHYL)], MEDIUM K-SALT
Descriptor:5'-D(*GP*CP*GP*TP*AP*(126)P*AP*CP*GP*C)-3', POTASSIUM ION
Authors:Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.
Deposit date:2001-01-29
Release date:2001-04-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Detection of alkali metal ions in DNA crystals using state-of-the-art X-ray diffraction experiments.
Nucleic Acids Res., 29, 2001
1I0Q
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1.3 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-[TRI(OXYETHYL)] THYMINE IN PLACE OF T6, MEDIUM NA-SALT
Descriptor:5'-D(*GP*CP*GP*TP*AP*(126)P*AP*CP*GP*C)-3', SODIUM ION
Authors:Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.
Deposit date:2001-01-29
Release date:2001-04-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Detection of alkali metal ions in DNA crystals using state-of-the-art X-ray diffraction experiments.
Nucleic Acids Res., 29, 2001
1I0T
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0.6 A STRUCTURE OF Z-DNA CGCGCG
Descriptor:5'-D(*CP*GP*CP*GP*CP*G)-3', SPERMINE
Authors:Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.
Deposit date:2001-01-29
Release date:2001-04-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (0.6 Å)
Cite:Detection of alkali metal ions in DNA crystals using state-of-the-art X-ray diffraction experiments.
Nucleic Acids Res., 29, 2001
1MA8
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A-DNA DECAMER GCGTA(UMS)ACGC WITH INCORPORATED 2'-METHYLSELENO-URIDINE
Descriptor:5'-D(*GP*CP*GP*TP*AP*UMSP*AP*CP*GP*C)-3'
Authors:Teplova, M., Wilds, C.J., Wawrzak, Z., Tereshko, V., Du, Q., Carrasco, N., Huang, Z., Egli, M.
Deposit date:2002-08-01
Release date:2002-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Covalent incorporation of selenium into oligonucleotides for X-ray crystal structure determination via MAD: proof of principle
BIOCHIMIE, 84, 2002
1PWF
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ONE SUGAR PUCKER FITS ALL: PAIRING VERSATILITY DESPITE CONFORMATIONAL UNIFORMITY IN TNA
Descriptor:5'-D(*GP*CP*GP*TP*AP*(2MU)P*(FA2)P*CP*GP*C)-3', SPERMINE
Authors:Pallan, P.S., Wilds, C.J., Wawrzak, Z., Krishnamurthy, R., Eschenmoser, A., Egli, M.
Deposit date:2003-07-01
Release date:2004-07-13
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Why does TNA cross-pair more strongly with RNA than with DNA? an answer from X-ray analysis.
ANGEW.CHEM.INT.ED.ENGL., 42, 2003
1XCI
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MISPAIR ALIGNED N3T-BUTYL-N3T INTERSTRAND CROSSLINK
Descriptor:5'-D(*CP*GP*AP*AP*AP*(TTM)P*TP*TP*TP*CP*G)-3'
Authors:da Silva, M.W., Bierbryer, R.G., Wilds, C.J., Noronha, A.M., Colvin, O.M., Miller, P.S., Gamcsik, M.P.
Deposit date:2004-09-02
Release date:2005-08-16
Last modified:2018-06-06
Method:SOLUTION NMR
Cite:Intrastrand base-stacking buttresses widening of major groove in interstrand cross-linked B-DNA.
Bioorg.Med.Chem., 13, 2005
2LZV
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DNA DUPLEX CONTAINING MISPAIR-ALIGNED O4U-HEPTYLENE-O4U INTERSTRAND CROSS-LINK
Descriptor:DNA (5'-D(*CP*GP*AP*AP*AP*UP*TP*TP*TP*CP*G)-3'), HEPTANE
Authors:Denisov, A.Y., McManus, F.P., Noronha, A.M., Wilds, C.J.
Deposit date:2012-10-11
Release date:2013-10-16
Last modified:2017-10-04
Method:SOLUTION NMR
Cite:Structural basis of interstrand cross-link repair by O(6)-alkylguanine DNA alkyltransferase.
Org. Biomol. Chem., 2017
2LZW
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DNA DUPLEX CONTAINING MISPAIR-ALIGNED O6G-HEPTYLENE-O6G INTERSTRAND CROSS-LINK
Descriptor:DNA (5'-D(*CP*GP*AP*AP*AP*GP*TP*TP*TP*CP*G)-3'), HEPTANE
Authors:Denisov, A.Y., McManus, F.P., Noronha, A.M., Wilds, C.J.
Deposit date:2012-10-11
Release date:2013-10-16
Last modified:2017-10-04
Method:SOLUTION NMR
Cite:Structural basis of interstrand cross-link repair by O(6)-alkylguanine DNA alkyltransferase.
Org. Biomol. Chem., 2017
2MH6
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SOLUTION STRUCTURE OF DNA DUPLEX CONTAINING N3T-ETHYLENE-N1I INTERSTRAND CROSS-LINK
Descriptor:5'-D(*CP*AP*GP*TP*TP*CP*CP*A)-3', 5'-D(*TP*GP*GP*AP*IP*CP*TP*G)-3'
Authors:Denisov, A.Y., O'Flaherty, D.K., Noronha, A.M., Wilds, C.J.
Deposit date:2013-11-18
Release date:2014-07-02
Last modified:2014-09-10
Method:SOLUTION NMR
Cite:NMR Structure of an Ethylene Interstrand Cross-Linked DNA which Mimics the Lesion Formed by 1,3-Bis(2-chloroethyl)-1-nitrosourea.
Chemmedchem, 9, 2014
2N89
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TETRAMERIC I-MOTIF STRUCTURE OF DT-DC-DC-CFL-CFL-DC AT ACIDIC PH
Descriptor:DNA (5'-D(*TP*CP*CP*(CFL)P*(CFL)P*C)-3')
Authors:Abou-Assi, H., Harkness, R.W., Martin-Pintado, N., Wilds, C.J., Campos-Olivas, R., Mittermaier, A.K., Gonzalez, C., Damha, M.J.
Deposit date:2015-10-09
Release date:2016-08-17
Method:SOLUTION NMR
Cite:Stabilization of i-motif structures by 2'-beta-fluorination of DNA.
Nucleic Acids Res., 44, 2016
4JRD
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CRYSTAL STRUCTURE OF THE PARALLEL DOUBLE-STRANDED HELIX OF POLY(A) RNA
Descriptor:RNA (5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), AMMONIUM ION
Authors:Safaee, N., Noronha, A.M., Kozlov, G., Rodionov, D., Wilds, C.J., Sheldrick, G.M., Gehring, K.
Deposit date:2013-03-21
Release date:2013-06-05
Last modified:2015-08-12
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structure of the parallel duplex of poly(A) RNA: evaluation of a 50 year-old prediction.
Angew.Chem.Int.Ed.Engl., 52, 2013
5H7P
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NMR STRUCTURE OF THE VTA1NTD-DID2(176-204) COMPLEX
Descriptor:Vacuolar protein sorting-associated protein VTA1, Vacuolar protein-sorting-associated protein 46
Authors:Shen, J., Yang, Z., Wild, C.J.
Deposit date:2016-11-20
Release date:2016-12-21
Method:SOLUTION NMR
Cite:NMR studies on the interactions between yeast Vta1 and Did2 during the multivesicular bodies sorting pathway
Sci Rep, 6, 2016
1HO6
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CHIMERIC ARABINONUCLEIC ACID (ANA) HAIRPIN WITH ANA/RNA HYBRID STEM
Descriptor:DNA/RNA (5'-R(*GP*GP*AP*C)-D(P*TP*TP*CP*G)-(P*(GAO)P*(UAR)P*(CAR)P*(CAR)-3')
Authors:Denisov, A.Y., Gehring, K.
Deposit date:2000-12-08
Release date:2001-11-07
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of an arabinonucleic acid (ANA)/RNA duplex in a chimeric hairpin: comparison with 2'-fluoro-ANA/RNA and DNA/RNA hybrids.
Nucleic Acids Res., 29, 2001
1HOQ
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CHIMERIC RNA/DNA HAIRPIN
Descriptor:DNA/RNA (5'-R(*GP*GP*AP*C)-D(P*TP*TP*CP*GP*GP*TP*CP*C)-3')
Authors:Denisov, A.Y., Gehring, K.
Deposit date:2000-12-11
Release date:2001-11-07
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of an arabinonucleic acid (ANA)/RNA duplex in a chimeric hairpin: comparison with 2'-fluoro-ANA/RNA and DNA/RNA hybrids.
Nucleic Acids Res., 29, 2001
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