Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2R5V
DownloadVisualize
BU of 2r5v by Molmil
Hydroxymandelate Synthase Crystal Structure
Descriptor: (2S)-hydroxy(4-hydroxyphenyl)ethanoic acid, COBALT (II) ION, PCZA361.1, ...
Authors:Brownlee, J.M, He, P, Moran, G.R, Harrison, D.H.T.
Deposit date:2007-09-04
Release date:2008-03-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Two roads diverged: the structure of hydroxymandelate synthase from Amycolatopsis orientalis in complex with 4-hydroxymandelate.
Biochemistry, 47, 2008
6CUL
DownloadVisualize
BU of 6cul by Molmil
PvdF of pyoverdin biosynthesis is a structurally unique N10-formyltetrahydrofolate-dependent formyltransferase
Descriptor: CITRIC ACID, N-(4-{[(2-amino-4-oxo-1,4-dihydroquinazolin-6-yl)methyl]amino}benzene-1-carbonyl)-D-glutamic acid, Pyoverdine synthetase F
Authors:Kenjic, N, Hoag, M.R, Moraski, G.C, Caperelli, C.A, Moran, G.R, Lamb, A.L.
Deposit date:2018-03-26
Release date:2019-02-06
Last modified:2019-11-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:PvdF of pyoverdin biosynthesis is a structurally unique N10-formyltetrahydrofolate-dependent formyltransferase.
Arch. Biochem. Biophys., 664, 2019
6PAY
DownloadVisualize
BU of 6pay by Molmil
Structure of HsICDH1:Mg(II):ICT:NADPH(50%) complex reveals structural basis for observation of half-sites reactivity
Descriptor: FORMIC ACID, ISOCITRIC ACID, Isocitrate dehydrogenase [NADP] cytoplasmic, ...
Authors:Silvaggi, N.R, Melkonian, T.R, Roman, J.V, Moran, G.R.
Deposit date:2019-06-12
Release date:2019-09-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.199 Å)
Cite:Transient-State Analysis of Human Isocitrate Dehydrogenase I: Accounting for the Interconversion of Active and Non-Active Conformational States.
Biochemistry, 58, 2019
1T47
DownloadVisualize
BU of 1t47 by Molmil
Structure of fe2-HPPD bound to NTBC
Descriptor: 2-{HYDROXY[2-NITRO-4-(TRIFLUOROMETHYL)PHENYL]METHYLENE}CYCLOHEXANE-1,3-DIONE, 4-hydroxyphenylpyruvate dioxygenase, FE (II) ION
Authors:Brownlee, J, Johnson-Winters, K, Harrison, D.H.T, Moran, G.R.
Deposit date:2004-04-28
Release date:2004-06-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the Ferrous Form of (4-Hydroxyphenyl)pyruvate Dioxygenase from Streptomyces avermitilis in Complex with the Therapeutic Herbicide, NTBC
Biochemistry, 43, 2004
4ZCD
DownloadVisualize
BU of 4zcd by Molmil
Renalase in complex with NAD+
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Silvaggi, N.R, Moran, G.R, Roman, J.V.
Deposit date:2015-04-15
Release date:2015-07-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.6605 Å)
Cite:Bacterial Renalase: Structure and Kinetics of an Enzyme with 2- and 6-Dihydro-beta-NAD(P) Oxidase Activity from Pseudomonas phaseolicola.
Biochemistry, 54, 2015
4ZCC
DownloadVisualize
BU of 4zcc by Molmil
Renalase in complex with NADH
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, ...
Authors:Silvaggi, N.R, Moran, G.R, Roman, J.V.
Deposit date:2015-04-15
Release date:2015-07-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.997 Å)
Cite:Bacterial Renalase: Structure and Kinetics of an Enzyme with 2- and 6-Dihydro-beta-NAD(P) Oxidase Activity from Pseudomonas phaseolicola.
Biochemistry, 54, 2015
5KKC
DownloadVisualize
BU of 5kkc by Molmil
l-lactate dehydrogenase from rabbit muscle with the inhibitor 6DHNAD
Descriptor: L-lactate dehydrogenase A chain, SULFATE ION, [[(2~{R},3~{S},4~{R},5~{R})-5-(5-aminocarbonyl-2~{H}-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate
Authors:Meneely, K.M, Moran, G.R, Lamb, A.L.
Deposit date:2016-06-21
Release date:2016-11-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.859 Å)
Cite:Ligand binding phenomena that pertain to the metabolic function of renalase.
Arch.Biochem.Biophys., 612, 2016
5KKA
DownloadVisualize
BU of 5kka by Molmil
E. coli malate dehydrogenase with the inhibitor 6DHNAD
Descriptor: Malate dehydrogenase, [[(2~{R},3~{S},4~{R},5~{R})-5-(5-aminocarbonyl-2~{H}-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate
Authors:Meneely, K.M, Lamb, A.L, Moran, G.R.
Deposit date:2016-06-21
Release date:2016-11-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Ligand binding phenomena that pertain to the metabolic function of renalase.
Arch.Biochem.Biophys., 612, 2016
5KRQ
DownloadVisualize
BU of 5krq by Molmil
Renalase in complex with NADPH
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Renalase
Authors:Silvaggi, N.R, Moran, G.R, Roman, J.V.
Deposit date:2016-07-07
Release date:2016-11-02
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.086 Å)
Cite:Ligand binding phenomena that pertain to the metabolic function of renalase.
Arch.Biochem.Biophys., 612, 2016
7JH4
DownloadVisualize
BU of 7jh4 by Molmil
Crystal structure of NAD(P)H-flavin oxidoreductase (NfoR) from S. aureus complexed with reduced FMN and NAD+
Descriptor: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, NAD(P)H-dependent oxidoreductase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Zheng, Y, O'Neill, A.G, Beaupre, B.A, Liu, D, Moran, G.R.
Deposit date:2020-07-20
Release date:2020-09-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:NfoR: Chromate Reductase or Flavin Mononucleotide Reductase?
Appl.Environ.Microbiol., 86, 2020
8F61
DownloadVisualize
BU of 8f61 by Molmil
Dihydropyrimidine Dehydrogenase (DPD) C671S Mutant Soaked with Dihydrothymine Quasi-Anaerobically
Descriptor: (5S)-5-methyl-1,3-diazinane-2,4-dione, 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, Dihydropyrimidine dehydrogenase [NADP(+)], ...
Authors:Kaley, N, Smith, M, Forouzesh, D, Liu, D, Moran, G.
Deposit date:2022-11-15
Release date:2023-02-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Mammalian dihydropyrimidine dehydrogenase: Added mechanistic details from transient-state analysis of charge transfer complexes.
Arch.Biochem.Biophys., 736, 2023
8F5W
DownloadVisualize
BU of 8f5w by Molmil
Dihydropyrimidine Dehydrogenase (DPD) C671S Mutant Soaked with Dihydrothymine and NADPH Quasi-Anaerobically
Descriptor: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL, Dihydropyrimidine dehydrogenase [NADP(+)], FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Kaley, N, Smith, M, Forouzesh, D, Liu, D, Moran, G.
Deposit date:2022-11-15
Release date:2023-02-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Mammalian dihydropyrimidine dehydrogenase: Added mechanistic details from transient-state analysis of charge transfer complexes.
Arch.Biochem.Biophys., 736, 2023
8F6N
DownloadVisualize
BU of 8f6n by Molmil
Dihydropyrimidine Dehydrogenase (DPD) C671S Mutant Soaked with Thymine Quasi-Anaerobically
Descriptor: Dihydropyrimidine dehydrogenase [NADP(+)], FLAVIN MONONUCLEOTIDE, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Kaley, N, Smith, M, Forouzesh, D, Liu, D, Moran, G.
Deposit date:2022-11-16
Release date:2023-02-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Mammalian dihydropyrimidine dehydrogenase: Added mechanistic details from transient-state analysis of charge transfer complexes.
Arch.Biochem.Biophys., 736, 2023
6PBT
DownloadVisualize
BU of 6pbt by Molmil
Pseudopaline Dehydrogenase with (R)-Pseudopaline Soaked 2 hours
Descriptor: 1,2-ETHANEDIOL, N-[(3S)-3-amino-3-carboxypropyl]-L-histidine, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:McFarlane, J.S, Lamb, A.L.
Deposit date:2019-06-14
Release date:2019-10-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Staphylopine and pseudopaline dehydrogenase from bacterial pathogens catalyze reversible reactions and produce stereospecific metallophores.
J.Biol.Chem., 294, 2019
6PBN
DownloadVisualize
BU of 6pbn by Molmil
Pseudopaline Dehydrogenase with (R)-Pseudopaline Soaked 1 hour
Descriptor: 1,2-ETHANEDIOL, 2-OXOGLUTARIC ACID, N-[(3S)-3-amino-3-carboxypropyl]-L-histidine, ...
Authors:McFarlane, J.S, Lamb, A.L.
Deposit date:2019-06-14
Release date:2019-10-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Staphylopine and pseudopaline dehydrogenase from bacterial pathogens catalyze reversible reactions and produce stereospecific metallophores.
J.Biol.Chem., 294, 2019
6PBM
DownloadVisualize
BU of 6pbm by Molmil
Pseudopaline Dehydrogenase with NADP+ bound
Descriptor: 1,2-ETHANEDIOL, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Pseudopaline Dehydrogenase
Authors:McFarlane, J.S, Lamb, A.L.
Deposit date:2019-06-14
Release date:2019-10-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Staphylopine and pseudopaline dehydrogenase from bacterial pathogens catalyze reversible reactions and produce stereospecific metallophores.
J.Biol.Chem., 294, 2019
6PBP
DownloadVisualize
BU of 6pbp by Molmil
Pseudopaline Dehydrogenase with (S)-Pseudopaline Soaked 1 hour
Descriptor: 1,2-ETHANEDIOL, N-[(1S)-1-carboxy-3-{[(1S)-1-carboxy-2-(1H-imidazol-5-yl)ethyl]amino}propyl]-L-glutamic acid, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:McFarlane, J.S, Lamb, A.L.
Deposit date:2019-06-14
Release date:2019-10-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Staphylopine and pseudopaline dehydrogenase from bacterial pathogens catalyze reversible reactions and produce stereospecific metallophores.
J.Biol.Chem., 294, 2019
5JY4
DownloadVisualize
BU of 5jy4 by Molmil
A high magnesium structure of the isochorismate synthase, EntC
Descriptor: (5S,6S)-5-[(1-carboxyethenyl)oxy]-6-hydroxycyclohexa-1,3-diene-1-carboxylic acid, Isochorismate synthase EntC, MAGNESIUM ION
Authors:Meneely, K.M, Sundlov, J.A, Gulick, A.M, Lamb, A.L.
Deposit date:2016-05-13
Release date:2016-07-20
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:An Open and Shut Case: The Interaction of Magnesium with MST Enzymes.
J.Am.Chem.Soc., 138, 2016
5JY8
DownloadVisualize
BU of 5jy8 by Molmil
An iron-bound structure of the isochorismate synthase EntC
Descriptor: (3R,4R)-3-[(1-carboxyethenyl)oxy]-4-hydroxycyclohexa-1,5-diene-1-carboxylic acid, FE (III) ION, Isochorismate synthase EntC
Authors:Meneely, K.M, Sundlov, J.A, Gulick, A.M, Lamb, A.L.
Deposit date:2016-05-13
Release date:2016-07-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.942 Å)
Cite:An Open and Shut Case: The Interaction of Magnesium with MST Enzymes.
J.Am.Chem.Soc., 138, 2016
5DJ3
DownloadVisualize
BU of 5dj3 by Molmil
Structure of the PLP-Dependent L-Arginine Hydroxylase MppP with D-Arginine Bound
Descriptor: (E)-N~2~-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-D-arginine, MAGNESIUM ION, PLP-Dependent L-Arginine Hydroxylase MppP
Authors:Silvaggi, N.R, Han, L.
Deposit date:2015-09-01
Release date:2015-11-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.227 Å)
Cite:Streptomyces wadayamensis MppP Is a Pyridoxal 5'-Phosphate-Dependent l-Arginine alpha-Deaminase, gamma-Hydroxylase in the Enduracididine Biosynthetic Pathway.
Biochemistry, 54, 2015
5DJ1
DownloadVisualize
BU of 5dj1 by Molmil
Structure of the PLP-Dependent L-Arginine Hydroxylase MppP Holoenzyme
Descriptor: CHLORIDE ION, MAGNESIUM ION, PLP-Dependent L-Arginine Hydroxylase MppP
Authors:Silvaggi, N.R, Han, L.
Deposit date:2015-09-01
Release date:2015-11-25
Last modified:2017-05-03
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Streptomyces wadayamensis MppP Is a Pyridoxal 5'-Phosphate-Dependent l-Arginine alpha-Deaminase, gamma-Hydroxylase in the Enduracididine Biosynthetic Pathway.
Biochemistry, 54, 2015
8EZ1
DownloadVisualize
BU of 8ez1 by Molmil
Human Ornithine Aminotransferase (hOAT) co-crystallized with its inactivator 3-Amino-4-fluorocyclopentenecarboxylic Acid
Descriptor: (1R,3S,4Z)-3-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-4-iminocyclopentane-1-carboxylic acid, (3E,4E)-4-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-3-iminocyclopent-1-ene-1-carboxylic acid, Ornithine aminotransferase, ...
Authors:Butrin, A, Shen, S, Silverman, R, Liu, D.
Deposit date:2022-10-30
Release date:2023-02-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structural and Mechanistic Basis for the Inactivation of Human Ornithine Aminotransferase by (3 S ,4 S )-3-Amino-4-fluorocyclopentenecarboxylic Acid.
Molecules, 28, 2023
5JY9
DownloadVisualize
BU of 5jy9 by Molmil
An iron-bound structure of the salicylate synthase Irp9
Descriptor: ACETATE ION, FE (II) ION, Putative salicylate synthetase, ...
Authors:Meneely, K.M, Lamb, A.L.
Deposit date:2016-05-13
Release date:2016-07-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.162 Å)
Cite:An Open and Shut Case: The Interaction of Magnesium with MST Enzymes.
J.Am.Chem.Soc., 138, 2016
5JZD
DownloadVisualize
BU of 5jzd by Molmil
A re-refinement of the isochorismate synthase EntC
Descriptor: (5S,6S)-5-[(1-carboxyethenyl)oxy]-6-hydroxycyclohexa-1,3-diene-1-carboxylic acid, Isochorismate synthase EntC, MAGNESIUM ION
Authors:Meneely, K.M, Lamb, A.L.
Deposit date:2016-05-16
Release date:2016-07-20
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.303 Å)
Cite:An Open and Shut Case: The Interaction of Magnesium with MST Enzymes.
J.Am.Chem.Soc., 138, 2016
5JXZ
DownloadVisualize
BU of 5jxz by Molmil
A low magnesium structure of the isochorismate synthase, EntC
Descriptor: (3R,4R)-3-[(1-carboxyethenyl)oxy]-4-hydroxycyclohexa-1,5-diene-1-carboxylic acid, (5S,6S)-5-[(1-carboxyethenyl)oxy]-6-hydroxycyclohexa-1,3-diene-1-carboxylic acid, Isochorismate synthase EntC, ...
Authors:Meneely, K.M, Sundlov, J.A, Gulick, A.M, Lamb, A.L.
Deposit date:2016-05-13
Release date:2016-07-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:An Open and Shut Case: The Interaction of Magnesium with MST Enzymes.
J.Am.Chem.Soc., 138, 2016

 

12>

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon