Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4JQC
DownloadVisualize
BU of 4jqc by Molmil
Crystal Structure of E.coli Enoyl Reductase in Complex with NAD and AFN-1252
Descriptor: Enoyl-[acyl-carrier-protein] reductase [NADH] FabI, N-methyl-N-[(3-methyl-1-benzofuran-2-yl)methyl]-3-(7-oxo-5,6,7,8-tetrahydro-1,8-naphthyridin-3-yl)propanamide, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Subramanya, H, Rao, K.N, Anirudha, L.
Deposit date:2013-03-20
Release date:2014-03-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of E.coli Enoyl Reductase in Complex with NAD and AFN-1252
TO BE PUBLISHED
4JX8
DownloadVisualize
BU of 4jx8 by Molmil
Crystal Structure of E.coli Enoyl Reductase in Complex with NAD and AEA16
Descriptor: 6-{(1E)-3-[3-(3-methyl-1-benzofuran-2-yl)azetidin-1-yl]-3-oxoprop-1-en-1-yl}-1,8-naphthyridin-2(1H)-one, Enoyl-[acyl-carrier-protein] reductase [NADH] FabI, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Subramanya, H, Rao, K.N, Anirudha, L.
Deposit date:2013-03-28
Release date:2014-04-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal Structure of E.coli Enoyl Reductase in Complex with NAD and AEA16
To be Published
5XFC
DownloadVisualize
BU of 5xfc by Molmil
Serial femtosecond X-ray structure of a stem domain of human O-mannose beta-1,2-N-acetylglucosaminyltransferase solved by Se-SAD using XFEL (refined against 13,000 patterns)
Descriptor: 4-nitrophenyl beta-D-mannopyranoside, Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
Authors:Kuwabara, N, Fumiaki, Y, Kato, R, Manya, H.
Deposit date:2017-04-10
Release date:2017-08-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography
IUCrJ, 4, 2017
5GGG
DownloadVisualize
BU of 5ggg by Molmil
Crystal structure of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase form I
Descriptor: Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
Authors:Kuwabara, N, Senda, T, Kato, R.
Deposit date:2016-06-16
Release date:2016-08-10
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (3 Å)
Cite:Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGN
DownloadVisualize
BU of 5ggn by Molmil
Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with GlcNAc-beta-pNP
Descriptor: 4-nitrophenyl 2-acetamido-2-deoxy-beta-D-glucopyranoside, Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
Authors:Kuwabara, N, Senda, T, Kato, R.
Deposit date:2016-06-16
Release date:2016-08-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.211 Å)
Cite:Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGJ
DownloadVisualize
BU of 5ggj by Molmil
Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with Man-alpha-pNP
Descriptor: 4-nitrophenyl alpha-D-mannopyranoside, Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
Authors:Kuwabara, N, Senda, T, Kato, R.
Deposit date:2016-06-16
Release date:2016-08-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.424 Å)
Cite:Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGL
DownloadVisualize
BU of 5ggl by Molmil
Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with GlcNAc-alpha-pNP
Descriptor: 4-nitrophenyl 2-acetamido-2-deoxy-alpha-D-glucopyranoside, Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
Authors:Kuwabara, N, Senda, T, Kato, R.
Deposit date:2016-06-16
Release date:2016-08-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGP
DownloadVisualize
BU of 5ggp by Molmil
Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with GlcNAc-beta1,2-Man-peptide
Descriptor: 10-mer Peptide from Dystroglycan, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose, Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1, ...
Authors:Kuwabara, N, Senda, T, Kato, R.
Deposit date:2016-06-16
Release date:2016-08-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGI
DownloadVisualize
BU of 5ggi by Molmil
Crystal structure of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with Mn, UDP and Mannosyl-peptide
Descriptor: MANGANESE (II) ION, PHOSPHATE ION, Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1, ...
Authors:Kuwabara, N, Senda, T, Kato, R.
Deposit date:2016-06-16
Release date:2016-08-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGK
DownloadVisualize
BU of 5ggk by Molmil
Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with Man-beta-pNP
Descriptor: 1,2-ETHANEDIOL, 4-nitrophenyl beta-D-mannopyranoside, DI(HYDROXYETHYL)ETHER, ...
Authors:Kuwabara, N, Senda, T, Kato, R.
Deposit date:2016-06-16
Release date:2016-08-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGO
DownloadVisualize
BU of 5ggo by Molmil
Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with GalNac-beta1,3-GlcNAc-beta-pNP
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-4-nitrophenyl 2-acetamido-2-deoxy-beta-D-glucopyranoside, Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
Authors:Kuwabara, N, Senda, T, Kato, R.
Deposit date:2016-06-16
Release date:2016-08-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.502 Å)
Cite:Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
5GGF
DownloadVisualize
BU of 5ggf by Molmil
Crystal structure of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase form II
Descriptor: Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
Authors:Kuwabara, N, Senda, T, Kato, R.
Deposit date:2016-06-15
Release date:2016-08-10
Last modified:2020-02-26
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
4CVH
DownloadVisualize
BU of 4cvh by Molmil
Crystal structure of human isoprenoid synthase domain-containing protein
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, ISOPRENOID SYNTHASE DOMAIN-CONTAINING PROTEIN, ...
Authors:Kopec, J, Froese, D.S, Krojer, T, Newman, J, Kiyani, W, Goubin, S, Strain-Damerell, C, Vollmar, M, von Delft, F, Burgess-Brown, N, Arrowsmith, C, Edwards, A, Bountra, C, Lefeber, D.J, Yue, W.W.
Deposit date:2014-03-27
Release date:2015-02-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Human Ispd is a Cytidyltransferase Required for Dystroglycan O-Mannosylation.
Chem.Biol., 22, 2015
5XFE
DownloadVisualize
BU of 5xfe by Molmil
Luciferin-regenerating enzyme solved by SAD using XFEL (refined against 11,000 patterns)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Luciferin regenerating enzyme, MAGNESIUM ION, ...
Authors:Yamashita, K, Pan, D, Okuda, T, Murai, T, Kodan, A, Yamaguchi, T, Gomi, K, Kajiyama, N, Kato, H, Ago, H, Yamamoto, M, Nakatsu, T.
Deposit date:2017-04-10
Release date:2017-08-30
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography
IUCrJ, 4, 2017
5XFD
DownloadVisualize
BU of 5xfd by Molmil
Serial femtosecond X-ray structure of Agrocybe cylindracea galectin with lactose solved by Se-SAD using XFEL (refined against 60,000 patterns)
Descriptor: Galactoside-binding lectin, alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose
Authors:Kuwabara, N, Fumiaki, Y, Kato, R.
Deposit date:2017-04-10
Release date:2017-08-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography
IUCrJ, 4, 2017
7E9J
DownloadVisualize
BU of 7e9j by Molmil
Crystal Structure of POMGNT2 in complex with UDP
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2, ...
Authors:Kuwabara, N.
Deposit date:2021-03-04
Release date:2021-05-05
Last modified:2021-07-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The structure of POMGNT2 provides new insights into the mechanism to determine the functional O-mannosylation site on alpha-dystroglycan.
Genes Cells, 26, 2021
7E9L
DownloadVisualize
BU of 7e9l by Molmil
Crystal Structure of POMGNT2 in complex with UDP and mono-mannosyl peptide (379Man short peptide)
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kuwabara, N.
Deposit date:2021-03-04
Release date:2021-05-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The structure of POMGNT2 provides new insights into the mechanism to determine the functional O-mannosylation site on alpha-dystroglycan.
Genes Cells, 26, 2021
7E9K
DownloadVisualize
BU of 7e9k by Molmil
Crystal Structure of POMGNT2 in complex with UDP and mono-mannosyl peptide (379Man long peptide)
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kuwabara, N.
Deposit date:2021-03-04
Release date:2021-05-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The structure of POMGNT2 provides new insights into the mechanism to determine the functional O-mannosylation site on alpha-dystroglycan.
Genes Cells, 26, 2021
5GZ9
DownloadVisualize
BU of 5gz9 by Molmil
Crystal structure of catalytic domain of Protein O-mannosyl Kinase in complexes with AMP-PNP, Magnesium ions and glycopeptide
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Protein O-mannose kinase, ...
Authors:Nagae, M, Yamaguchi, Y.
Deposit date:2016-09-27
Release date:2017-03-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:3D structural analysis of protein O-mannosyl kinase, POMK, a causative gene product of dystroglycanopathy.
Genes Cells, 22, 2017
5GZ8
DownloadVisualize
BU of 5gz8 by Molmil
Crystal structure of catalytic domain of Protein O-mannosyl Kinase in ligand-free form
Descriptor: Protein O-mannose kinase
Authors:Nagae, M, Yamaguchi, Y.
Deposit date:2016-09-27
Release date:2017-03-29
Last modified:2017-12-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:3D structural analysis of protein O-mannosyl kinase, POMK, a causative gene product of dystroglycanopathy.
Genes Cells, 22, 2017
6KAM
DownloadVisualize
BU of 6kam by Molmil
Crystal structure of FKRP in complex with Ba ion, CDP-ribtol, and sugar acceptor
Descriptor: 2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-mannopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, BARIUM ION, ...
Authors:Kuwabara, N.
Deposit date:2019-06-23
Release date:2020-01-15
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy.
Nat Commun, 11, 2020
6L7U
DownloadVisualize
BU of 6l7u by Molmil
Crystal structure of FKRP in complex with Ba ion, Ba-SAD data
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, BARIUM ION, Fukutin-related protein, ...
Authors:Kuwabara, N.
Deposit date:2019-11-03
Release date:2020-01-15
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy.
Nat Commun, 11, 2020
6L7T
DownloadVisualize
BU of 6l7t by Molmil
Crystal structure of FKRP in complex with Mg ion, Zinc low remote data
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fukutin-related protein, MAGNESIUM ION, ...
Authors:Kuwabara, N.
Deposit date:2019-11-03
Release date:2020-01-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy.
Nat Commun, 11, 2020
6L7S
DownloadVisualize
BU of 6l7s by Molmil
Crystal structure of FKRP in complex with Mg ion, Zinc peak data
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fukutin-related protein, MAGNESIUM ION, ...
Authors:Kuwabara, N.
Deposit date:2019-11-03
Release date:2020-01-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy.
Nat Commun, 11, 2020
6KAK
DownloadVisualize
BU of 6kak by Molmil
Crystal structure of FKRP in complex with Mg ion
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fukutin-related protein, MAGNESIUM ION, ...
Authors:Kuwabara, N.
Deposit date:2019-06-23
Release date:2020-01-15
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.056 Å)
Cite:Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy.
Nat Commun, 11, 2020

 

12>

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon