1YG0
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4Z1A
| Structure of apo form KDO8PS from H.pylori | Descriptor: | 2-dehydro-3-deoxyphosphooctonate aldolase | Authors: | Lee, B.J, Cho, S, Im, H, Yoon, H.J. | Deposit date: | 2015-03-27 | Release date: | 2016-03-09 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Identification of novel scaffolds for potential anti-Helicobacter pylori agents based on the crystal structure of H. pylori 3-deoxy-d-manno-octulosonate 8-phosphate synthase (HpKDO8PS). Eur.J.Med.Chem., 108, 2016
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4Z1D
| Structure of PEP and zinc bound KDO8PS from H.pylori | Descriptor: | 2-dehydro-3-deoxyphosphooctonate aldolase, PHOSPHOENOLPYRUVATE, ZINC ION | Authors: | Lee, B.J, Cho, S, Im, H, Yoon, H.J. | Deposit date: | 2015-03-27 | Release date: | 2016-03-09 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Identification of novel scaffolds for potential anti-Helicobacter pylori agents based on the crystal structure of H. pylori 3-deoxy-d-manno-octulosonate 8-phosphate synthase (HpKDO8PS). Eur.J.Med.Chem., 108, 2016
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4Z1B
| Structure of H204A mutant KDO8PS from H.pylori | Descriptor: | 2-dehydro-3-deoxyphosphooctonate aldolase | Authors: | Lee, B.J, Cho, S, Im, H, Yoon, H.J. | Deposit date: | 2015-03-27 | Release date: | 2016-03-09 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Identification of novel scaffolds for potential anti-Helicobacter pylori agents based on the crystal structure of H. pylori 3-deoxy-d-manno-octulosonate 8-phosphate synthase (HpKDO8PS). Eur.J.Med.Chem., 108, 2016
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4Z1C
| Structure of Cadmium bound KDO8PS from H.pylori | Descriptor: | 2-dehydro-3-deoxyphosphooctonate aldolase, CADMIUM ION | Authors: | Lee, B.J, Cho, S, Im, H, Yoon, H.J. | Deposit date: | 2015-03-27 | Release date: | 2016-03-09 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.93 Å) | Cite: | Identification of novel scaffolds for potential anti-Helicobacter pylori agents based on the crystal structure of H. pylori 3-deoxy-d-manno-octulosonate 8-phosphate synthase (HpKDO8PS). Eur.J.Med.Chem., 108, 2016
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7VHV
| Crystal structure of S. aureus D-alanine alanyl carrier protein ligase | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, D-alanine--D-alanyl carrier protein ligase, MAGNESIUM ION | Authors: | Lee, B.J, Lee, I.-G, Im, H.G, Yoon, H.J. | Deposit date: | 2021-09-23 | Release date: | 2022-04-13 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.55 Å) | Cite: | Structural and functional analysis of the D-alanyl carrier protein ligase DltA from Staphylococcus aureus Mu50. Acta Crystallogr D Struct Biol, 78, 2022
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4N9H
| Crystal structure of Transcription regulation Protein CRP | Descriptor: | Catabolite gene activator | Authors: | Lee, B.J, Seok, S.H, Im, H, Yoon, H.J. | Deposit date: | 2013-10-21 | Release date: | 2014-07-09 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structures of inactive CRP species reveal the atomic details of the allosteric transition that discriminates cyclic nucleotide second messengers. Acta Crystallogr.,Sect.D, 70, 2014
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4LSY
| Crystal structure of copper-bound L66S mutant toxin from Helicobacter pylori | Descriptor: | CITRATE ANION, COPPER (II) ION, Uncharacterized protein, ... | Authors: | Lee, B.J, Im, H, Pathak, C.C, Yoon, H.J. | Deposit date: | 2013-07-23 | Release date: | 2014-02-05 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.895 Å) | Cite: | Crystal structure of apo and copper bound HP0894 toxin from Helicobacter pylori 26695 and insight into mRNase activity Biochim.Biophys.Acta, 1834, 2013
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4LTT
| Crystal structure of native apo toxin from Helicobacter pylori | Descriptor: | Uncharacterized protein, toxin | Authors: | Lee, B.J, Im, H, Pathak, C.C, Yoon, H.J. | Deposit date: | 2013-07-23 | Release date: | 2014-02-05 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.28 Å) | Cite: | Crystal structure of apo and copper bound HP0894 toxin from Helicobacter pylori 26695 and insight into mRNase activity Biochim.Biophys.Acta, 1834, 2013
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4NRN
| Crystal structure of metal-bound toxin from Helicobacter pylori | Descriptor: | ZINC ION, metal-bound toxin | Authors: | Lee, B.J, Im, H, Pathak, C, Jang, S.B. | Deposit date: | 2013-11-27 | Release date: | 2014-10-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.802 Å) | Cite: | Crystal structure of toxin HP0892 from Helicobacter pylori with two Zn(II) at 1.8 angstrom resolution Protein Sci., 23, 2014
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5HS7
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5HS8
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6IFM
| Crystal structure of DNA bound VapBC from Salmonella typhimurium | Descriptor: | Antitoxin VapB, DNA backward (27-MER), DNA forward (27-MER), ... | Authors: | Park, D.W, Lee, B.J. | Deposit date: | 2018-09-20 | Release date: | 2020-01-29 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.804 Å) | Cite: | Crystal structure of proteolyzed VapBC and DNA-bound VapBC from Salmonella enterica Typhimurium LT2 and VapC as a putative Ca2+-dependent ribonuclease. Faseb J., 34, 2020
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6IFC
| Crystal structure of VapBC from Salmonella typhimurium | Descriptor: | Antitoxin VapB, CALCIUM ION, tRNA(fMet)-specific endonuclease VapC | Authors: | Park, D.W, Lee, B.J. | Deposit date: | 2018-09-19 | Release date: | 2020-01-29 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.99 Å) | Cite: | Crystal structure of proteolyzed VapBC and DNA-bound VapBC from Salmonella enterica Typhimurium LT2 and VapC as a putative Ca2+-dependent ribonuclease. Faseb J., 34, 2020
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5X3T
| VapBC from Mycobacterium tuberculosis | Descriptor: | Antitoxin VapB26, MAGNESIUM ION, Ribonuclease VapC26 | Authors: | Kang, S.M, Kim, D.H, Yoon, H.J, Lee, B.J. | Deposit date: | 2017-02-07 | Release date: | 2017-06-07 | Last modified: | 2017-12-06 | Method: | X-RAY DIFFRACTION (2.65 Å) | Cite: | Functional details of the Mycobacterium tuberculosis VapBC26 toxin-antitoxin system based on a structural study: insights into unique binding and antibiotic peptides. Nucleic Acids Res., 45, 2017
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5XR2
| SAV0551 | Descriptor: | LACTIC ACID, Protein/nucleic acid deglycase HchA, ZINC ION | Authors: | Kim, H.J, Kwon, A.R, Lee, B.J. | Deposit date: | 2017-06-07 | Release date: | 2017-11-01 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Structural and functional studies of SAV0551 fromStaphylococcus aureusas a chaperone and glyoxalase III. Biosci. Rep., 37, 2017
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5XR3
| SAV0551 with glyoxylate | Descriptor: | GLYOXYLIC ACID, Protein/nucleic acid deglycase HchA | Authors: | Kim, H.J, Kwon, A.R, Lee, B.J. | Deposit date: | 2017-06-08 | Release date: | 2017-11-01 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (3.01 Å) | Cite: | Structural and functional studies of SAV0551 fromStaphylococcus aureusas a chaperone and glyoxalase III. Biosci. Rep., 37, 2017
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4Z9E
| Alba from Thermoplasma volcanium | Descriptor: | DNA/RNA-binding protein Alba | Authors: | Ma, C, Lee, S.J, Pathak, C, Lee, B.J. | Deposit date: | 2015-04-10 | Release date: | 2016-02-24 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.49 Å) | Cite: | Alba from Thermoplasma volcanium belongs to alpha-NAT's: An insight into the structural aspects of Tv Alba and its acetylation by Tv Ard1. Arch.Biochem.Biophys., 590, 2016
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4PV6
| Crystal Structure Analysis of Ard1 from Thermoplasma volcanium | Descriptor: | ACETYL COENZYME *A, COENZYME A, N-terminal acetyltransferase complex subunit [ARD1] | Authors: | Ma, C, Lee, S.J, Lee, B.J. | Deposit date: | 2014-03-15 | Release date: | 2015-01-21 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.32 Å) | Cite: | Structure of Thermoplasma volcanium Ard1 belongs to N-acetyltransferase family member suggesting multiple ligand binding modes with acetyl coenzyme A and coenzyme A. Biochim.Biophys.Acta, 1844, 2014
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8H2D
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8H0H
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5HS9
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3U7L
| Crystal structures of the Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors | Descriptor: | (S)-N-(cyclopentylmethyl)-2-(3-(3,5-difluorophenyl)ureido)-N-(2-(hydroxyamino)-2-oxoethyl)-3,3-dimethylbutanamide, Peptide deformylase, ZINC ION | Authors: | Lee, S.J, Lee, S.-J, Lee, S.K, Yoon, H.-J, Lee, H.H, Kim, K.K, Lee, B.J, Suh, S.W. | Deposit date: | 2011-10-14 | Release date: | 2012-06-27 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.01 Å) | Cite: | Structures of Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors Acta Crystallogr.,Sect.D, 68, 2012
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3U7M
| Crystal structures of the Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors | Descriptor: | N-((2R,4S)-2-butyl-4-(3-(2-fluorophenyl)ureido)-5-methyl-3-oxohexyl)-N-hydroxyformamide, Peptide deformylase, ZINC ION | Authors: | Lee, S.J, Lee, S.-J, Lee, S.K, Yoon, H.-J, Lee, H.H, Kim, K.K, Lee, B.J, Suh, S.W. | Deposit date: | 2011-10-14 | Release date: | 2012-06-27 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Structures of Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors Acta Crystallogr.,Sect.D, 68, 2012
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3U7K
| Crystal structures of the Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors | Descriptor: | (S)-N-(cyclopentylmethyl)-N-(2-(hydroxyamino)-2-oxoethyl)-2-(3-(2-methoxyphenyl)ureido)-3,3-dimethylbutanamide, Peptide deformylase, ZINC ION | Authors: | Lee, S.J, Lee, S.-J, Lee, S.K, Yoon, H.-J, Lee, H.H, Kim, K.K, Lee, B.J, Suh, S.W. | Deposit date: | 2011-10-14 | Release date: | 2012-06-27 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structures of Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors Acta Crystallogr.,Sect.D, 68, 2012
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