Author results

1FIY
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THREE-DIMENSIONAL STRUCTURE OF PHOSPHOENOLPYRUVATE CARBOXYLASE FROM ESCHERICHIA COLI AT 2.8 A RESOLUTION
Descriptor:PHOSPHOENOLPYRUVATE CARBOXYLASE, ASPARTIC ACID
Authors:Kai, Y., Matsumura, H., Inoue, T., Terada, K., Nagara, Y., Yoshinaga, T., Kihara, A., Izui, K.
Deposit date:1998-05-02
Release date:1999-02-09
Last modified:2018-05-23
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Three-dimensional structure of phosphoenolpyruvate carboxylase: a proposed mechanism for allosteric inhibition.
Proc.Natl.Acad.Sci.USA, 96, 1999
1JQN
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CRYSTAL STRUCTURE OF E.COLI PHOSPHOENOLPYRUVATE CARBOXYLASE IN COMPLEX WITH MN2+ AND DCDP
Descriptor:phosphoenolpyruvate carboxylase, MANGANESE (II) ION, ASPARTIC ACID, ...
Authors:Matsumura, H., Kai, Y.
Deposit date:2001-08-07
Release date:2003-01-14
Last modified:2018-05-30
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structures of C4 form maize and quaternary complex of E. coli phosphoenolpyruvate carboxylases.
Structure, 10, 2002
1JQO
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CRYSTAL STRUCTURE OF C4-FORM PHOSPHOENOLPYRUVATE CARBOXYLASE FROM MAIZE
Descriptor:phosphoenolpyruvate carboxylase, SULFATE ION
Authors:Matsumura, H., Kai, Y.
Deposit date:2001-08-07
Release date:2003-01-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structures of C4 form maize and quaternary complex of E. coli phosphoenolpyruvate carboxylases.
Structure, 10, 2002
1C7K
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CRYSTAL STRUCTURE OF THE ZINC PROTEASE
Descriptor:ZINC ENDOPROTEASE, ZINC ION, CALCIUM ION
Authors:Kurisu, G., Harada, S., Kai, Y.
Deposit date:2000-02-19
Release date:2001-04-25
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structure of the zinc-binding site in the crystal structure of a zinc endoprotease from Streptomyces caespitosus at 1 A resolution.
J.Inorg.Biochem., 82, 2000
1UAT
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THE SIGNIFICANCE OF THE FLEXIBLE LOOP IN THE AZURIN (AZ-ISO2) FROM THE OBLIGATE METHYLOTROPH METHYLOMONAS SP. STRAIN J
Descriptor:Azurin iso-2, COPPER (II) ION, SULFATE ION
Authors:Inoue, T., Suzuki, S., Nisho, N., Yamaguchi, K., Kataoka, K., Tobari, J., Yong, X., Hamanaka, S., Matsumura, H., Kai, Y.
Deposit date:2003-03-19
Release date:2004-03-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The significance of the flexible loop in the azurin (Az-iso2) from the obligate methylotroph Methylomonas sp. strain J
J.Mol.Biol., 333, 2003
1PMY
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REFINED CRYSTAL STRUCTURE OF PSEUDOAZURIN FROM METHYLOBACTERIUM EXTORQUENS AM1 AT 1.5 ANGSTROMS RESOLUTION
Descriptor:PSEUDOAZURIN, COPPER (II) ION
Authors:Inoue, T., Kai, Y., Harada, S., Kasai, N., Ohshiro, Y., Suzuki, S., Kohzuma, T., Tobari, J.
Deposit date:1994-01-28
Release date:1994-07-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Refined crystal structure of pseudoazurin from Methylobacterium extorquens AM1 at 1.5 A resolution.
Acta Crystallogr.,Sect.D, 50, 1994
1BQK
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OXIDIZED PSEUDOAZURIN
Descriptor:PSEUDOAZURIN, COPPER (II) ION
Authors:Inoue, T., Nishio, N., Hamanaka, S., Shimomura, T., Harada, S., Suzuki, S., Kohzuma, T., Shidara, S., Iwasaki, H., Kai, Y.
Deposit date:1998-08-17
Release date:1999-08-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Crystal structure determinations of oxidized and reduced pseudoazurins from Achromobacter cycloclastes. Concerted movement of copper site in redox forms with the rearrangement of hydrogen bond at a remote histidine.
J.Biol.Chem., 274, 1999
1BQR
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REDUCED PSEUDOAZURIN
Descriptor:PSEUDOAZURIN, COPPER (II) ION
Authors:Inoue, T., Nishio, N., Hamanaka, S., Shimomura, T., Harada, S., Suzuki, S., Kohzuma, T., Shidara, S., Iwasaki, H., Kai, Y.
Deposit date:1998-08-17
Release date:1999-08-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure determinations of oxidized and reduced pseudoazurins from Achromobacter cycloclastes. Concerted movement of copper site in redox forms with the rearrangement of hydrogen bond at a remote histidine.
J.Biol.Chem., 274, 1999
1QB4
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CRYSTAL STRUCTURE OF MN(2+)-BOUND PHOSPHOENOLPYRUVATE CARBOXYLASE
Descriptor:PHOSPHOENOLPYRUVATE CARBOXYLASE, MANGANESE (II) ION, ASPARTIC ACID
Authors:Matsumura, H., Terada, M., Shirakata, S., Inoue, T., Yoshinaga, T., Izui, K., Kai, Y.
Deposit date:1999-04-30
Release date:2002-05-01
Last modified:2018-05-23
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Plausible phosphoenolpyruvate binding site revealed by 2.6 A structure of Mn2+-bound phosphoenolpyruvate carboxylase from Escherichia coli
FEBS Lett., 458, 1999
1RKR
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CRYSTAL STRUCTURE OF AZURIN-I FROM ALCALIGENES XYLOSOXIDANS NCIMB 11015
Descriptor:AZURIN-I, COPPER (II) ION
Authors:Li, C., Inoue, T., Gotowda, M., Suzuki, S., Yamaguchi, K., Kataoka, K., Kai, Y.
Deposit date:1997-05-17
Release date:1998-05-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structure of azurin I from the denitrifying bacterium Alcaligenes xylosoxidans NCIMB 11015 at 2.45 A resolution.
Acta Crystallogr.,Sect.D, 54, 1998
1BXU
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OXIDIZED PLASTOCYANIN FROM SYNECHOCOCCUS SP.
Descriptor:PLASTOCYANIN, COPPER (II) ION
Authors:Inoue, T., Sugawara, H., Hamanaka, S., Tsukui, H., Suzuki, E., Kohzuma, T., Kai, Y.
Deposit date:1998-10-09
Release date:1999-06-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure determinations of oxidized and reduced plastocyanin from the cyanobacterium Synechococcus sp. PCC 7942.
Biochemistry, 38, 1999
1BXV
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REDUCED PLASTOCYANIN FROM SYNECHOCOCCUS SP.
Descriptor:PLASTOCYANIN, COPPER (II) ION
Authors:Inoue, T., Sugawara, H., Hamanaka, S., Tsukui, H., Suzuki, E., Kohzuma, T., Kai, Y.
Deposit date:1998-10-09
Release date:1999-06-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure determinations of oxidized and reduced plastocyanin from the cyanobacterium Synechococcus sp. PCC 7942.
Biochemistry, 38, 1999
1BYO
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WILD-TYPE PLASTOCYANIN FROM SILENE
Descriptor:PROTEIN (PLASTOCYANIN), COPPER (II) ION
Authors:Sugawara, H., Inoue, T., Li, C., Gotowda, M., Hibino, T., Takabe, T., Kai, Y.
Deposit date:1998-10-19
Release date:1999-10-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of wild-type and mutant plastocyanins from a higher plant, Silene.
J.Biochem.(Tokyo), 125, 1999
1BYP
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E43K,D44K DOUBLE MUTANT PLASTOCYANIN FROM SILENE
Descriptor:PROTEIN (PLASTOCYANIN), COPPER (II) ION
Authors:Sugawara, H., Inoue, T., Li, C., Gotowda, M., Hibino, T., Takabe, T., Kai, Y.
Deposit date:1998-10-19
Release date:1999-10-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structures of wild-type and mutant plastocyanins from a higher plant, Silene.
J.Biochem.(Tokyo), 125, 1999
1CUO
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CRYSTAL STRUCTURE ANALYSIS OF ISOMER-2 AZURIN FROM METHYLOMONAS J
Descriptor:PROTEIN (AZURIN ISO-2), COPPER (II) ION
Authors:Inoue, T., Nishio, N., Kai, Y., Suzuki, S., Kataoka, K.
Deposit date:1999-08-21
Release date:2000-08-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The significance of the flexible loop in the azurin (Az-iso2) from the obligate methylotroph Methylomonas sp. strain J.
J.Mol.Biol., 333, 2003
1KUH
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ZINC PROTEASE FROM STREPTOMYCES CAESPITOSUS
Descriptor:ZINC PROTEASE, ZINC ION, CALCIUM ION
Authors:Kurisu, G., Kinoshita, T., Sugimoto, A., Nagara, A., Kai, Y., Kasai, N., Harada, S.
Deposit date:1996-02-22
Release date:1997-03-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of the zinc endoprotease from Streptomyces caespitosus.
J.Biochem.(Tokyo), 121, 1997
1MGT
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CRYSTAL STRUCTURE OF O6-METHYLGUANINE-DNA METHYLTRANSFERASE FROM HYPERTHERMOPHILIC ARCHAEON PYROCOCCUS KODAKARAENSIS STRAIN KOD1
Descriptor:PROTEIN (O6-METHYLGUANINE-DNA METHYLTRANSFERASE), SULFATE ION
Authors:Hashimoto, H., Inoue, T., Nishioka, M., Fujiwara, S., Takagi, M., Imanaka, T., Kai, Y.
Deposit date:1999-01-12
Release date:2000-01-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Hyperthermostable protein structure maintained by intra and inter-helix ion-pairs in archaeal O6-methylguanine-DNA methyltransferase.
J.Mol.Biol., 292, 1999
1WN7
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CRYSTAL STRUCTURE OF ARCHAEAL FAMILY B DNA POLYMERASE MUTANT
Descriptor:Family B DNA Polymerase, NICKEL (II) ION, GLYCEROL
Authors:Kuroita, T., Matsumura, H., Yokota, N., Hashimoto, H., Imanaka, T., Inoue, T., Kai, Y.
Deposit date:2004-07-28
Release date:2005-08-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural Mechanism for Coordination of Proofreading and Polymerase Activities in Archaeal DNA Polymerases
J.Mol.Biol., 351, 2005
1IWA
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RUBISCO FROM GALDIERIA PARTITA
Descriptor:ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit, SULFATE ION
Authors:Okano, Y., Mizohata, E., Xie, Y., Matsumura, H., Sugawara, H., Inoue, T., Yokota, A., Kai, Y.
Deposit date:2002-04-30
Release date:2003-04-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:X-Ray Structure of Galdieria Rubisco Complexed with one sulfate ion per active site
FEBS LETT., 527, 2002
1KDI
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REDUCED FORM OF PLASTOCYANIN FROM DRYOPTERIS CRASSIRHIZOMA
Descriptor:PLASTOCYANIN, COPPER (II) ION
Authors:Inoue, T., Gotowda, M., Hamada, K., Kohzuma, T., Yoshizaki, F., Sugimura, Y., Kai, Y.
Deposit date:1998-05-08
Release date:1999-05-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structure and unusual pH dependence of plastocyanin from the fern Dryopteris crassirhizoma. The protonation of an active site histidine is hindered by pi-pi interactions.
J.Biol.Chem., 274, 1999
1KDJ
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OXIDIZED FORM OF PLASTOCYANIN FROM DRYOPTERIS CRASSIRHIZOMA
Descriptor:PLASTOCYANIN, COPPER (II) ION
Authors:Inoue, T., Gotowda, M., Hamada, K., Kohzuma, T., Yoshizaki, F., Sugimura, Y., Kai, Y.
Deposit date:1998-05-08
Release date:1999-05-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The structure and unusual pH dependence of plastocyanin from the fern Dryopteris crassirhizoma. The protonation of an active site histidine is hindered by pi-pi interactions.
J.Biol.Chem., 274, 1999
1V40
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FIRST INHIBITOR COMPLEX STRUCTURE OF HUMAN HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE
Descriptor:Glutathione-requiring prostaglandin D synthase, MAGNESIUM ION, GLUTATHIONE, ...
Authors:Inoue, T., Okano, Y., Kado, Y., Aritake, K., Irikura, D., Uodome, N., Kinugasa, S., Okazaki, N., Matsumura, H., Kai, Y., Urade, Y.
Deposit date:2003-11-07
Release date:2004-11-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:First determination of the inhibitor complex structure of human hematopoietic prostaglandin D synthase.
J.Biochem.(Tokyo), 135, 2004
1WS7
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CRYSTAL STRUCTURE OF MAVICYANIN FROM CUCURBITA PEPO MEDULLOSA (ZUCCHINI)
Descriptor:Mavicyanin, COPPER (I) ION
Authors:Xie, Y., Inoue, T., Miyamoto, Y., Matsumura, H., Kataoka, K., Yamaguchi, K., Nojini, M., Suzuki, S., Kai, Y.
Deposit date:2004-11-02
Release date:2004-11-23
Last modified:2018-07-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural reorganization of the copper binding site involving Thr15 of mavicyanin from Cucurbita pepo medullosa (zucchini) upon reduction.
J.Biochem.(Tokyo), 137, 2005
1WS8
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CRYSTAL STRUCTURE OF MAVICYANIN FROM CUCURBITA PEPO MEDULLOSA (ZUCCHINI)
Descriptor:mavicyanin, COPPER (II) ION, GLYCEROL
Authors:Xie, Y., Inoue, T., Miyamoto, Y., Matsumura, H., Kunishige, K., Yamaguchi, K., Nojini, M., Suzuki, S., Kai, Y.
Deposit date:2004-11-02
Release date:2004-11-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural reorganization of the copper binding site involving Thr15 of mavicyanin from Cucurbita pepo medullosa (zucchini) upon reduction.
J.Biochem.(Tokyo), 137, 2005
1IR1
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CRYSTAL STRUCTURE OF SPINACH RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+ AND 2-CARBOXYARABINITOL-1,5-BISPHOSPHATE
Descriptor:Large subunit of Rubisco, Small subunit of Rubisco, MAGNESIUM ION, ...
Authors:Mizohata, E., Matsumura, H., Okano, Y., Kumei, M., Takuma, H., Onodera, J., Kato, K., Shibata, N., Inoue, T., Yokota, A., Kai, Y.
Deposit date:2001-08-31
Release date:2002-03-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate.
J.Mol.Biol., 316, 2002
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