Author results

1NYI
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CROSSLINKED HAMMERHEAD RIBOZYME INITIAL STATE
Descriptor:Hammerhead Ribozyme
Authors:Dunham, C.M., Murray, J.B., Scott, W.G.
Deposit date:2003-02-12
Release date:2004-02-24
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:A helical twist-induced conformational switch activates cleavage in the hammerhead ribozyme.
J.Mol.Biol., 332, 2003
1Q29
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HAMMERHEAD RIBOZYME WITH 5'-5' G-G LINKAGE: CONFORMATIONAL CHANGE EXPERIMENT
Descriptor:5'-R(*GP*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3'/Ribozyme
Authors:Dunham, C.M., Murray, J.B., Scott, W.G.
Deposit date:2003-07-23
Release date:2004-02-24
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (3 Å)
Cite:A helical twist-induced conformational switch activates cleavage in the hammerhead ribozyme.
J.Mol.Biol., 332, 2003
1Y28
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CRYSTAL STRUCTURE OF THE R220A METBJFIXL HEME DOMAIN
Descriptor:Sensor protein fixL (E.C.2.7.3.-)
Authors:Dunham, C.M., Dioum, E.M., Tuckerman, J.R., Gonzalez, G., Scott, W.G., Gilles-Gonzalez, M.A.
Deposit date:2004-11-21
Release date:2004-12-07
Modification date:2009-02-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A distal arginine in the oxygen-sensing heme-PAS domains is essential to ligand binding, signal transduction, and structure
Biochemistry, 42, 2003
2UXB
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CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA GGGU IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT.
Descriptor:RIBOSOMAL PROTEIN S2, RIBOSOMAL PROTEIN S3, RIBOSOMAL PROTEIN S4, RIBOSOMAL PROTEIN S5, RIBOSOMAL PROTEIN S6, RIBOSOMAL PROTEIN S7, RIBOSOMAL PROTEIN S8, RIBOSOMAL PROTEIN S9, RIBOSOMAL PROTEIN S10, RIBOSOMAL PROTEIN S11, RIBOSOMAL PROTEIN S12, RIBOSOMAL PROTEIN S13, RIBOSOMAL PROTEIN S14, RIBOSOMAL PROTEIN S15, RIBOSOMAL PROTEIN S16, RIBOSOMAL PROTEIN S17, RIBOSOMAL PROTEIN S18, RIBOSOMAL PROTEIN S19, RIBOSOMAL PROTEIN S20, RIBOSOMAL PROTEIN THX/RNA Complex, PAROMOMYCIN
Authors:Dunham, C.M., Selmer, M., Phelps, S.S., Kelley, A.C., Suzuki, T., Joseph, S., Ramakrishnan, V.
Deposit date:2007-03-28
Release date:2007-07-31
Modification date:2013-12-25
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structures of Trnas with an Expanded Anticodon Loop in the Decoding Center of the 30S Ribosomal Subunit
RNA, 13, 2007
2UXC
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CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA UCGU IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT.
Descriptor:RIBOSOMAL PROTEIN S2, RIBOSOMAL PROTEIN S3, RIBOSOMAL PROTEIN S4, RIBOSOMAL PROTEIN S5, RIBOSOMAL PROTEIN S6, RIBOSOMAL PROTEIN S7, RIBOSOMAL PROTEIN S8, RIBOSOMAL PROTEIN S9, RIBOSOMAL PROTEIN S10, RIBOSOMAL PROTEIN S11, RIBOSOMAL PROTEIN S12, RIBOSOMAL PROTEIN S13, RIBOSOMAL PROTEIN S14, RIBOSOMAL PROTEIN S15, RIBOSOMAL PROTEIN S16, RIBOSOMAL PROTEIN S17, RIBOSOMAL PROTEIN S18, RIBOSOMAL PROTEIN S19, RIBOSOMAL PROTEIN S20, RIBOSOMAL PROTEIN THX/RNA Complex, PAROMOMYCIN
Authors:Dunham, C.M., Selmer, M., Phelps, S.S., Kelley, A.C., Suzuki, T., Joseph, S., Ramakrishnan, V.
Deposit date:2007-03-28
Release date:2007-05-08
Modification date:2015-05-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structures of Trnas with an Expanded Anticodon Loop in the Decoding Center of the 30S Ribosomal Subunit.
RNA, 13, 2007
2UXD
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CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA CGGG IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT.
Descriptor:RIBOSOMAL PROTEIN S2, RIBOSOMAL PROTEIN S3, RIBOSOMAL PROTEIN S4, RIBOSOMAL PROTEIN S5, RIBOSOMAL PROTEIN S6, RIBOSOMAL PROTEIN S7, RIBOSOMAL PROTEIN S8, RIBOSOMAL PROTEIN S9, RIBOSOMAL PROTEIN S10, RIBOSOMAL PROTEIN S11, RIBOSOMAL PROTEIN S12, RIBOSOMAL PROTEIN S13, RIBOSOMAL PROTEIN S14, RIBOSOMAL PROTEIN S15, RIBOSOMAL PROTEIN S16, RIBOSOMAL PROTEIN S17, RIBOSOMAL PROTEIN S18, RIBOSOMAL PROTEIN S19, RIBOSOMAL PROTEIN S20, RIBOSOMAL PROTEIN THX/RNA Complex, PAROMOMYCIN
Authors:Dunham, C.M., Selmer, M., Phelps, S.S., Kelley, A.C., Suzuki, T., Joseph, S., Ramakrishnan, V.
Deposit date:2007-03-28
Release date:2007-10-02
Modification date:2012-10-10
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structures of Trnas with an Expanded Anticodon Loop in the Decoding Center of the 30S Ribosomal Subunit.
RNA, 13, 2007
1VVJ
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CRYSTAL STRUCTURE OF FRAMESHIFT SUPPRESSOR TRNA SUFA6 BOUND TO CODON CCC-G ON THE RIBOSOME
Descriptor:PROTEIN/RNA Complex
Authors:Maehigashi, T., Dunkle, J.A., Dunham, C.M.
Deposit date:2013-05-24
Release date:2014-08-06
Modification date:2014-12-10
Method:X-RAY DIFFRACTION (3.440001 Å)
Cite:Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
3UZ0
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CRYSTAL STRUCTURE OF SPOIIIAH AND SPOIIQ COMPLEX
Descriptor:Stage III sporulation protein AH, Stage II sporulation protein Q
Authors:Maehigashi, T., Meisner, J., Dunham, C.M.
Deposit date:2011-12-07
Release date:2012-03-21
Modification date:2012-05-09
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Structure of the basal components of a bacterial transporter.
Proc.Natl.Acad.Sci.USA, 109, 2012
4L47
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CRYSTAL STRUCTURE OF FRAMESHIFT SUPPRESSOR TRNA SUFA6 BOUND TO CODON CCC-U ON THE RIBOSOME
Descriptor:PROTEIN/RNA Complex
Authors:Maehigashi, T., Dunkle, J.A., Dunham, C.M.
Deposit date:2013-06-07
Release date:2014-08-06
Modification date:2014-12-10
Method:X-RAY DIFFRACTION (3.220001 Å)
Cite:Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4L71
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CRYSTAL STRUCTURE OF FRAMESHIFT SUPPRESSOR TRNA SUFA6 BOUND TO CODON CCC-A ON THE RIBOSOME
Descriptor:PROTEIN/RNA Complex
Authors:Maehigashi, T., Dunkle, J.A., Dunham, C.M.
Deposit date:2013-06-13
Release date:2014-08-06
Modification date:2014-12-10
Method:X-RAY DIFFRACTION (3.900001 Å)
Cite:Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4LEL
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CRYSTAL STRUCTURE OF FRAMESHIFT SUPPRESSOR TRNA SUFA6 BOUND TO CODON CCG-G ON THE RIBOSOME
Descriptor:PROTEIN/RNA Complex
Authors:Maehigashi, T., Dunkle, J.A., Dunham, C.M.
Deposit date:2013-06-25
Release date:2014-08-06
Modification date:2014-12-10
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4LFZ
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CRYSTAL STRUCTURE OF FRAMESHIFT SUPPRESSOR TRNA SUFA6 BOUND TO CODON CCC-U IN THE ABSENCE OF PAROMOMYCIN
Descriptor:PROTEIN/RNA Complex
Authors:Maehigashi, T., Dunkle, J.A., Dunham, C.M.
Deposit date:2013-06-27
Release date:2014-08-06
Modification date:2014-12-10
Method:X-RAY DIFFRACTION (3.920001 Å)
Cite:Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4LNT
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CRYSTAL STRUCTURE OF TRNA PROLINE (CGG) BOUND TO CODON CCC-U ON THE RIBOSOME
Descriptor:PROTEIN/RNA Complex
Authors:Maehigashi, T., Dunkle, J.A., Dunham, C.M.
Deposit date:2013-07-12
Release date:2014-08-06
Modification date:2014-12-10
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4LSK
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CRYSTAL STRUCTURE OF TRNA PROLINE (CGG) BOUND TO CODON CCG-G ON THE RIBOSOME
Descriptor:PROTEIN/RNA Complex
Authors:Maehigashi, T., Dunkle, J.A., Dunham, C.M.
Deposit date:2013-07-22
Release date:2014-08-06
Modification date:2014-12-10
Method:X-RAY DIFFRACTION (3.480006 Å)
Cite:Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4LT8
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CRYSTAL STRUCTURE OF TRNA PROLINE (CGG) BOUND TO CODON CCC-G ON THE RIBOSOME
Descriptor:PROTEIN/RNA Complex
Authors:Maehigashi, T., Dunkle, J.A., Dunham, C.M.
Deposit date:2013-07-23
Release date:2014-08-06
Modification date:2014-12-10
Method:X-RAY DIFFRACTION (3.140002 Å)
Cite:Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4MCT
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P. VULGARIS HIGBA STRUCTURE, CRYSTAL FORM 1
Descriptor:Antidote protein, Killer protein
Authors:Schureck, M.A., Maehigashi, T., Dunham, C.M.
Deposit date:2013-08-21
Release date:2013-12-11
Modification date:2014-01-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the Proteus vulgaris HigB-(HigA)2-HigB Toxin-Antitoxin Complex.
J.Biol.Chem., 289, 2014
4MCX
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P. VULGARIS HIGBA STRUCTURE, CRYSTAL FORM 2
Descriptor:Host inhibition of growth A, Host inhibition of growth B
Authors:Schureck, M.A., Maehigashi, T., Dunham, C.M.
Deposit date:2013-08-21
Release date:2013-12-11
Modification date:2014-01-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the Proteus vulgaris HigB-(HigA)2-HigB Toxin-Antitoxin Complex.
J.Biol.Chem., 289, 2014
4OX9
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CRYSTAL STRUCTURE OF THE AMINOGLYCOSIDE RESISTANCE METHYLTRANSFERASE NPMA BOUND TO THE 30S RIBOSOMAL SUBUNIT
Descriptor:30S ribosomal protein S2, 30S ribosomal protein S3, 30S ribosomal protein S4, 30S ribosomal protein S5, 30S ribosomal protein S6, 30S ribosomal protein S7, 30S ribosomal protein S8, 30S ribosomal protein S9, 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S13, 30S ribosomal protein S14, 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, 30S ribosomal protein S18, 30S ribosomal protein S19, 30S ribosomal protein S20, 30S ribosomal protein S21, NpmA/RNA Complex
Authors:Dunkle, J.A., Conn, G.L., Dunham, C.M.
Deposit date:2014-02-04
Release date:2014-04-09
Modification date:2015-09-30
Method:X-RAY DIFFRACTION (3.8035 Å)
Cite:Molecular recognition and modification of the 30S ribosome by the aminoglycoside-resistance methyltransferase NpmA.
Proc.Natl.Acad.Sci.USA, 111, 2014
4P6F
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CRYSTAL STRUCTURE OF THE PEPTOLIDE 12C BOUND TO BACTERIAL RIBOSOME
Descriptor:Ribosome/Antibiotic complex
Authors:Fagan, C.E., Dunham, C.M.
Deposit date:2014-03-24
Release date:2014-10-01
Modification date:2015-09-30
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Macrolide-Peptide Conjugates as Probes of the Path of Travel of the Nascent Peptides through the Ribosome.
Acs Chem.Biol., 9, 2014
4P70
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CRYSTAL STRUCTURE OF UNMODIFIED TRNA PROLINE (CGG) BOUND TO CODON CCG ON THE RIBOSOME
Descriptor:30S ribosomal protein S2, 30S ribosomal protein S3, 30S ribosomal protein S4, 30S ribosomal protein S5, 30S ribosomal protein S6, 30S ribosomal protein S7, 30S ribosomal protein S8, 30S ribosomal protein S9, 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S13, 30S ribosomal protein S14, 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, 30S ribosomal protein S18, 30S ribosomal protein S19, 30S ribosomal protein S20, 30S ribosomal protein S21, 50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, 50S ribosomal protein L5, 50S ribosomal protein L6, 50S ribosomal protein L9, 50S ribosomal protein L11, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, 50S ribosomal protein L17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L20, 50S ribosomal protein L21, 50S ribosomal protein L22, 50S ribosomal protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, 50S ribosomal protein L27, 50S ribosomal protein L28, 50S ribosomal protein L29, 50S ribosomal protein L30, 50S ribosomal protein L32, 50S ribosomal protein L33, 50S ribosomal protein L34, 50S ribosomal protein L35, 50S ribosomal protein L36/RNA Complex
Authors:Maehigashi, T., Dunkle, J.A., Dunham, C.M.
Deposit date:2014-03-25
Release date:2014-08-13
Modification date:2015-02-25
Method:X-RAY DIFFRACTION (3.68 Å)
Cite:Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.
Proc.Natl.Acad.Sci.USA, 111, 2014
4PX8
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STRUCTURE OF P. VULGARIS HIGB TOXIN
Descriptor:Killer protein
Authors:Schureck, M.A., Dunkle, J.A., Maehigashi, T., Dunham, C.M.
Deposit date:2014-03-22
Release date:2015-10-21
Modification date:2015-11-25
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Defining the mRNA recognition signature of a bacterial toxin protein.
Proc.Natl.Acad.Sci.USA, 112, 2015
4Q2U
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CRYSTAL STRUCTURE OF THE E. COLI DINJ-YAFQ TOXIN-ANTITOXIN COMPLEX
Descriptor:Antitoxin DinJ, mRNA interferase YafQ (E.C.3.1.-.-)
Authors:Maehigashi, T., Ruangprasert, A., Dunham, C.M.
Deposit date:2014-04-09
Release date:2014-06-11
Modification date:2014-08-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mechanisms of Toxin Inhibition and Transcriptional Repression by Escherichia coli DinJ-YafQ.
J.Biol.Chem., 289, 2014
4TUA
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CRYSTAL STRUCTURE OF ASL-THR BOUND TO CODON ACC-A ON THE RIBOSOME
Descriptor:30S ribosomal protein S2, 30S ribosomal protein S3, 30S ribosomal protein S4, 30S ribosomal protein S5, 30S ribosomal protein S6, 30S ribosomal protein S7, 30S ribosomal protein S8, 30S ribosomal protein S9, 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S13, 30S ribosomal protein S14 type Z, 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, 30S ribosomal protein S18, 30S ribosomal protein S19, 30S ribosomal protein S20, 30S ribosomal protein Thx, 50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, 50S ribosomal protein L5, 50S ribosomal protein L6, 50S ribosomal protein L9, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, 50S ribosomal protein L17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L20, 50S ribosomal protein L21, 50S ribosomal protein L22, 50S ribosomal protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, 50S ribosomal protein L27, 50S ribosomal protein L28, 50S ribosomal protein L29, 50S ribosomal protein L30, 50S ribosomal protein L31, 50S ribosomal protein L32, 50S ribosomal protein L33, 50S ribosomal protein L34, 50S ribosomal protein L35, 50S ribosomal protein L36/RNA Complex
Authors:Fagan, C.E., Dunham, C.M.
Deposit date:2014-06-24
Release date:2015-05-13
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural insights into translational recoding by frameshift suppressor tRNASufJ.
Rna, 20, 2014
4TUB
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CRYSTAL STRUCTURE OF TRNA-THR BOUND TO CODON ACC-C ON THE RIBOSOME
Descriptor:30S ribosomal protein S2, 30S ribosomal protein S3, 30S ribosomal protein S4, 30S ribosomal protein S5, 30S ribosomal protein S6, 30S ribosomal protein S7, 30S ribosomal protein S8, 30S ribosomal protein S9, 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S13, 30S ribosomal protein S14 type Z, 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, 30S ribosomal protein S18, 30S ribosomal protein S19, 30S ribosomal protein S20, 30S ribosomal protein Thx, 50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, 50S ribosomal protein L5, 50S ribosomal protein L6, 50S ribosomal protein L9, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, 50S ribosomal protein L17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L20, 50S ribosomal protein L21, 50S ribosomal protein L22, 50S ribosomal protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, 50S ribosomal protein L27, 50S ribosomal protein L28, 50S ribosomal protein L29, 50S ribosomal protein L30, 50S ribosomal protein L31, 50S ribosomal protein L32, 50S ribosomal protein L33, 50S ribosomal protein L34, 50S ribosomal protein L35, 50S ribosomal protein L36/RNA Complex
Authors:Fagan, C.E., Dunham, C.M.
Deposit date:2014-06-24
Release date:2015-05-13
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural insights into translational recoding by frameshift suppressor tRNASufJ.
Rna, 20, 2014
4TUC
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CRYSTAL STRUCTURE OF ASL-SUFJ BOUND TO CODON ACC-A ON THE RIBOSOME
Descriptor:30S ribosomal protein S2, 30S ribosomal protein S3, 30S ribosomal protein S4, 30S ribosomal protein S5, 30S ribosomal protein S6, 30S ribosomal protein S7, 30S ribosomal protein S8, 30S ribosomal protein S9, 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S13, 30S ribosomal protein S14 type Z, 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, 30S ribosomal protein S18, 30S ribosomal protein S19, 30S ribosomal protein S20, 30S ribosomal protein Thx, 50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, 50S ribosomal protein L5, 50S ribosomal protein L6, 50S ribosomal protein L9, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, 50S ribosomal protein L17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L20, 50S ribosomal protein L21, 50S ribosomal protein L22, 50S ribosomal protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, 50S ribosomal protein L27, 50S ribosomal protein L28, 50S ribosomal protein L29, 50S ribosomal protein L30, 50S ribosomal protein L31, 50S ribosomal protein L32, 50S ribosomal protein L33, 50S ribosomal protein L34, 50S ribosomal protein L35, 50S ribosomal protein L36/RNA Complex
Authors:Fagan, C.E., Dunham, C.M.
Deposit date:2014-06-24
Release date:2015-05-13
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural insights into translational recoding by frameshift suppressor tRNASufJ.
Rna, 20, 2014
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