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1YT5
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Crystal structure of NAD kinase from Thermotoga maritima
Descriptor: SULFATE ION, inorganic polyphosphate/ATP-NAD kinase
Authors:Berkeley Structural Genomics Center (BSGC)
Deposit date:2005-02-09
Release date:2005-04-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of a NAD kinase from Thermotoga maritima at 2.3 A resolution.
Acta Crystallogr.,Sect.F, 61, 2005
1L7M
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HIGH RESOLUTION LIGANDED STRUCTURE OF PHOSPHOSERINE PHOSPHATASE (PI COMPLEX)
Descriptor: MAGNESIUM ION, PHOSPHATE ION, Phosphoserine Phosphatase
Authors:Wang, W, Cho, H.S, Kim, R, Jancarik, J, Yokota, H, Nguyen, H.H, Grigoriev, I.V, Wemmer, D.E, Kim, S.H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2002-03-15
Release date:2002-04-03
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Structural characterization of the reaction pathway in phosphoserine phosphatase: crystallographic "snapshots" of intermediate states.
J.Mol.Biol., 319, 2002
1L7P
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SUBSTRATE BOUND PHOSPHOSERINE PHOSPHATASE COMPLEX STRUCTURE
Descriptor: PHOSPHATE ION, PHOSPHOSERINE, PHOSPHOSERINE PHOSPHATASE
Authors:Wang, W, Cho, H.S, Kim, R, Jancarik, J, Yokota, H, Nguyen, H.H, Grigoriev, I.V, Wemmer, D.E, Kim, S.H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2002-03-16
Release date:2002-06-19
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural characterization of the reaction pathway in phosphoserine phosphatase: crystallographic "snapshots" of intermediate states.
J.Mol.Biol., 319, 2002
1U0L
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BU of 1u0l by Molmil
Crystal structure of YjeQ from Thermotoga maritima
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Probable GTPase engC, ZINC ION
Authors:Shin, D.H, Lou, Y, Jaru, J, Kim, R, Yokota, H, Kim, S.H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2004-07-13
Release date:2004-09-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of YjeQ from Thermotoga maritima contains a circularly permuted GTPase domain
Proc.Natl.Acad.Sci.Usa, 101, 2004
1U3G
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BU of 1u3g by Molmil
Structural and Functional Characterization of a 5,10-Methenyltetrahydrofolate Synthetase from Mycoplasma pneumoniae (GI: 13508087)
Descriptor: 5,10-Methenyltetrahydrofolate Synthetase, 5-HYDROXYMETHYLENE-6-HYDROFOLIC ACID, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Chen, S, Yakunin, A.F, Proudfoot, M, Kim, R, Kim, S.-H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2004-07-21
Release date:2004-12-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of methenyltetrahydrofolate synthetase from Mycoplasma pneumoniae (GI: 13508087) at 2.2 A resolution
Proteins, 56, 2004
2I1O
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BU of 2i1o by Molmil
Crystal Structure of a Nicotinate Phosphoribosyltransferase from Thermoplasma acidophilum
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETIC ACID, ...
Authors:Shin, D.H, Kim, R, Kim, S.-H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2006-08-14
Release date:2006-08-29
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of a zinc ion bound Nicotinate Phosphoribosyltransferase from Thermoplasma acidophilum
To be Published
4D8M
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Crystal structure of Bacillus thuringiensis Cry5B nematocidal toxin
Descriptor: Pesticidal crystal protein cry5Ba
Authors:Fan, H, Hu, Y, Aroian, R.V, Ghosh, P, Berkeley Structural Genomics Center (BSGC)
Deposit date:2012-01-10
Release date:2012-12-19
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and Glycolipid Binding Properties of the Nematicidal Protein Cry5B.
Biochemistry, 51, 2012
2HY5
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Crystal structure of DsrEFH
Descriptor: DsrH, Intracellular sulfur oxidation protein dsrF, Putative sulfurtransferase dsrE
Authors:Shin, D.H, Schulte, A, Dahl, C, Kim, R, Kim, S.H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2006-08-04
Release date:2006-09-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Crystal structure of DsrEFH
To be Published
2I14
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Crystal structure of nicotinate-nucleotide pyrophosphorylase from Pyrococcus furiosus
Descriptor: 1-ALPHA-PYROPHOSPHORYL-2-ALPHA,3-ALPHA-DIHYDROXY-4-BETA-CYCLOPENTANE-METHANOL-5-PHOSPHATE, Nicotinate-nucleotide pyrophosphorylase, ZINC ION
Authors:Shin, D.H, Kim, R, Kim, S.-H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2006-08-12
Release date:2006-10-10
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of nicotinate-nucleotide pyrophosphorylase from Pyrococcus furiosus
To be Published
1XCO
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Crystal Structure of a Phosphotransacetylase from Bacillus subtilis in complex with acetylphosphate
Descriptor: ACETYLPHOSPHATE, Phosphate acetyltransferase, SULFATE ION
Authors:Xu, Q.S, Jancarik, J, Lou, Y, Yokota, H, Adams, P, Kim, R, Kim, S.-H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2004-09-02
Release date:2004-12-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal structures of a phosphotransacetylase from Bacillus subtilis and its complex with acetyl phosphate
J.STRUCT.FUNCT.GENOM., 6, 2005
1YF2
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Three-dimensional structure of DNA sequence specificity (S) subunit of a type I restriction-modification enzyme and its functional implications
Descriptor: Type I restriction-modification enzyme, S subunit
Authors:Kim, J.S, Degiovanni, A, Jancarik, J, Adams, P.D, Yokota, H.A, Kim, R, Kim, S.H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2004-12-30
Release date:2005-02-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of DNA sequence specificity subunit of a type I restriction-modification enzyme and its functional implications.
Proc.Natl.Acad.Sci.USA, 102, 2005
1JX7
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Crystal structure of ychN protein from E.coli
Descriptor: HYPOTHETICAL PROTEIN YCHN
Authors:Shin, D.H, Yokota, H, Kim, R, Kim, S.-H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2001-09-05
Release date:2002-09-07
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of a conserved hypothetical protein from Escherichia coli
J.STRUCT.FUNCT.GENOM., 2, 2002
1DUS
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BU of 1dus by Molmil
MJ0882-A hypothetical protein from M. jannaschii
Descriptor: MJ0882
Authors:Hung, L, Huang, L, Kim, R, Kim, S.H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2000-01-18
Release date:2000-07-19
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure-based experimental confirmation of biochemical function to a methyltransferase, MJ0882, from hyperthermophile Methanococcus jannaschii
J.STRUCT.FUNCT.GENOM., 2, 2002
1F5S
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CRYSTAL STRUCTURE OF PHOSPHOSERINE PHOSPHATASE FROM METHANOCOCCUS JANNASCHII
Descriptor: MAGNESIUM ION, PHOSPHATE ION, PHOSPHOSERINE PHOSPHATASE (PSP)
Authors:Wang, W, Kim, R, Jancarik, J, Yokota, H, Kim, S.H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2000-06-15
Release date:2001-06-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of phosphoserine phosphatase from Methanococcus jannaschii, a hyperthermophile, at 1.8 A resolution.
Structure, 9, 2001
1EKE
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BU of 1eke by Molmil
CRYSTAL STRUCTURE OF CLASS II RIBONUCLEASE H (RNASE HII) WITH MES LIGAND
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, RIBONUCLEASE HII
Authors:Lai, L.H, Yokota, H, Hung, L.W, Kim, R, Kim, S.H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2000-03-07
Release date:2000-09-13
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of archaeal RNase HII: a homologue of human major RNase H
Structure, 8, 2000
1G8A
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BU of 1g8a by Molmil
PYROCOCCUS HORIKOSHII FIBRILLARIN PRE-RRNA PROCESSING PROTEIN
Descriptor: FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEIN
Authors:Boisvert, D.C, Kim, S.H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2000-11-16
Release date:2003-10-14
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:A Structural Approach to Gene Function and Structure Quality for Pyrococcus horikoshii Fibrillarin
To be Published
1FO5
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SOLUTION STRUCTURE OF REDUCED MJ0307
Descriptor: THIOREDOXIN
Authors:Cave, J.W, Cho, H.S, Batchelder, A.M, Kim, R, Yokota, H, Wemmer, D.E, Berkeley Structural Genomics Center (BSGC)
Deposit date:2000-08-24
Release date:2001-04-11
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution nuclear magnetic resonance structure of a protein disulfide oxidoreductase from Methanococcus jannaschii.
Protein Sci., 10, 2001
1FBN
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CRYSTAL STRUCTURE OF A FIBRILLARIN HOMOLOGUE FROM METHANOCOCCUS JANNASCHII, A HYPERTHERMOPHILE, AT 1.6 A
Descriptor: MJ FIBRILLARIN HOMOLOGUE
Authors:Wang, H, Boisvert, D, Kim, K.K, Kim, R, Kim, S.H, Berkeley Structural Genomics Center (BSGC)
Deposit date:1999-04-25
Release date:2000-04-26
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 A resolution.
EMBO J., 19, 2000
1G2I
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BU of 1g2i by Molmil
CRYSTAL STRUCTURE OF A NOVEL INTRACELLULAR PROTEASE FROM PYROCOCCUS HORIKOSHII AT 2 A RESOLUTION
Descriptor: PROTEASE I, SULFATE ION
Authors:Du, X, Choi, I.-G, Kim, R, Jancarik, J, Kim, S.-H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2000-10-19
Release date:2000-11-08
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of an intracellular protease from Pyrococcus horikoshii at 2-A resolution.
Proc.Natl.Acad.Sci.USA, 97, 2000
3M93
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Complex crystal structure of Ascaris suum eIF4E-3 with m7G cap
Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, Eukaryotic translation initiation factor 4E-binding protein 1, Translation initiation factor 4E
Authors:Liu, W, Berkeley Structural Genomics Center (BSGC)
Deposit date:2010-03-19
Release date:2011-07-20
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis for nematode eIF4E binding an m2,2,7G-Cap and its implications for translation initiation.
Nucleic Acids Res., 39, 2011
3M94
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Complex crystal structure of Ascaris suum eIF4E-3 with m2,2,7G cap
Descriptor: ACETYL GROUP, Eukaryotic translation initiation factor 4E-binding protein 1, N,N,7-trimethylguanosine 5'-(trihydrogen diphosphate), ...
Authors:Liu, W, Berkeley Structural Genomics Center (BSGC)
Deposit date:2010-03-19
Release date:2011-07-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis for nematode eIF4E binding an m2,2,7G-Cap and its implications for translation initiation.
Nucleic Acids Res., 39, 2011
1J97
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Phospho-Aspartyl Intermediate Analogue of Phosphoserine phosphatase
Descriptor: MAGNESIUM ION, PHOSPHATE ION, Phosphoserine Phosphatase
Authors:Cho, H, Wang, W, Kim, R, Yokota, H, Damo, S, Kim, S.-H, Wemmer, D, Kustu, S, Yan, D, Berkeley Structural Genomics Center (BSGC)
Deposit date:2001-05-24
Release date:2001-07-25
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:BeF(3)(-) acts as a phosphate analog in proteins phosphorylated on aspartate: structure of a BeF(3)(-) complex with phosphoserine phosphatase.
Proc.Natl.Acad.Sci.USA, 98, 2001
3NMD
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BU of 3nmd by Molmil
Crystal structure of the leucine zipper domain of cGMP dependent protein kinase I beta
Descriptor: GLYCEROL, HEXANE-1,6-DIOL, cGMP Dependent PRotein Kinase
Authors:Kim, C, Casteel, D.E, Smith-Nguyen, E.V, Sankaran, B, Berkeley Structural Genomics Center (BSGC)
Deposit date:2010-06-22
Release date:2010-09-08
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.272 Å)
Cite:A crystal structure of the cyclic GMP-dependent protein kinase I{beta} dimerization/docking domain reveals molecular details of isoform-specific anchoring.
J.Biol.Chem., 285, 2010
1ILW
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BU of 1ilw by Molmil
Crystal Structure of Pyrazinamidase/Nicotinamidase of Pyrococcus horikoshii
Descriptor: 180 aa long hypothetical Pyrazinamidase/nicotinamidase
Authors:Du, X, Kim, S.-H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2001-05-08
Release date:2001-12-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure and mechanism of catalysis of a pyrazinamidase from Pyrococcus horikoshii.
Biochemistry, 40, 2001
1MJH
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Structure-based assignment of the biochemical function of hypothetical protein MJ0577: A test case of structural genomics
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, PROTEIN (ATP-BINDING DOMAIN OF PROTEIN MJ0577)
Authors:Zarembinski, T.I, Hung, L.-W, Mueller-Dieckmann, H.J, Kim, K.-K, Yokota, H, Kim, R, Kim, S.-H, Berkeley Structural Genomics Center (BSGC)
Deposit date:1998-11-04
Release date:1998-12-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure-based assignment of the biochemical function of a hypothetical protein: a test case of structural genomics.
Proc.Natl.Acad.Sci.USA, 95, 1998

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