4V7E | | MODEL OF THE SMALL SUBUNIT RNA BASED ON A 5.5 A CRYO-EM MAP OF TRITICUM AESTIVUM TRANSLATING 80S RIBOSOME | | Descriptor: | 18S ribosomal RNA, P-site tRNA, 5'-R(*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3', ... | | Authors: | Barrio-Garcia, C., Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R. | | Deposit date: | 2013-11-22 | | Release date: | 2014-07-09 | | Last modified: | 2019-12-18 | | Method: | ELECTRON MICROSCOPY (5.5 Å) | | Cite: | Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion.
Nature, 506, 2014
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3IZD | | MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A 6.1 A CRYO-EM MAP OF SACCHAROMYCES CEREVISIAE TRANSLATING 80S RIBOSOME. 3IZD IS A SMALL PART (AN EXPANSION SEGMENT) WHICH IS IN AN ALTERNATIVE CONFORMATION TO WHAT IS IN ALREADY 3IZF. | | Descriptor: | rRNA expansion segment ES27L in an "out" conformation | | Authors: | Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R. | | Deposit date: | 2010-10-13 | | Release date: | 2010-12-01 | | Last modified: | 2012-05-30 | | Method: | ELECTRON MICROSCOPY (8.6 Å) | | Cite: | Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.
Proc.Natl.Acad.Sci.USA, 107, 2010
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4V6I | | LOCALIZATION OF THE SMALL SUBUNIT RIBOSOMAL PROTEINS INTO A 6.1 A CRYO-EM MAP OF SACCHAROMYCES CEREVISIAE TRANSLATING 80S RIBOSOME | | Descriptor: | 40S ribosomal protein RACK1 (RACK1), 40S ribosomal protein rpS0 (S2p), 40S ribosomal protein rpS3 (S3p), ... | | Authors: | Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R. | | Deposit date: | 2010-10-12 | | Release date: | 2014-07-09 | | Last modified: | 2019-12-18 | | Method: | ELECTRON MICROSCOPY (8.8 Å) | | Cite: | Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.
Proc.Natl.Acad.Sci.USA, 107, 2010
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6T4Q | | STRUCTURE OF YEAST 80S RIBOSOME STALLED ON THE CGA-CCG INHIBITORY CODON COMBINATION. | | Descriptor: | 18S rRNA, 40S ribosomal protein S1-A, 40S ribosomal protein S15, ... | | Authors: | Tesina, P., Buschauer, R., Cheng, J., Berninghausen, O., Becker, R., Beckmann, R. | | Deposit date: | 2019-10-14 | | Release date: | 2019-12-25 | | Last modified: | 2020-02-12 | | Method: | ELECTRON MICROSCOPY (2.6 Å) | | Cite: | Molecular mechanism of translational stalling by inhibitory codon combinations and poly(A) tracts.
Embo J., 39, 2020
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6T7I | | STRUCTURE OF YEAST 80S RIBOSOME STALLED ON THE CGA-CGA INHIBITORY CODON COMBINATION. | | Descriptor: | 18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ... | | Authors: | Tesina, P., Buschauer, R., Cheng, J., Berninghausen, O., Becker, R., Beckmann, R. | | Deposit date: | 2019-10-22 | | Release date: | 2019-12-25 | | Last modified: | 2020-02-12 | | Method: | ELECTRON MICROSCOPY (3.2 Å) | | Cite: | Molecular mechanism of translational stalling by inhibitory codon combinations and poly(A) tracts.
Embo J., 39, 2020
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6T7T | | STRUCTURE OF YEAST 80S RIBOSOME STALLED ON POLY(A) TRACT. | | Descriptor: | 60S ribosomal protein L2-A, 40S ribosomal protein S0-A, 60S ribosomal protein L3, ... | | Authors: | Tesina, P., Buschauer, R., Cheng, J., Berninghausen, O., Becker, R., Beckmann, R. | | Deposit date: | 2019-10-23 | | Release date: | 2019-12-25 | | Last modified: | 2020-02-19 | | Method: | ELECTRON MICROSCOPY (3.1 Å) | | Cite: | Molecular mechanism of translational stalling by inhibitory codon combinations and poly(A) tracts.
Embo J., 39, 2020
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6T83 | | STRUCTURE OF YEAST DISOME (DI-RIBOSOME) STALLED ON POLY(A) TRACT. | | Descriptor: | 18S rRNA, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ... | | Authors: | Tesina, P., Buschauer, R., Cheng, J., Berninghausen, O., Becker, R., Beckmann, R. | | Deposit date: | 2019-10-24 | | Release date: | 2019-12-25 | | Last modified: | 2020-02-12 | | Method: | ELECTRON MICROSCOPY (4 Å) | | Cite: | Molecular mechanism of translational stalling by inhibitory codon combinations and poly(A) tracts.
Embo J., 39, 2020
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6TB3 | | YEAST 80S RIBOSOME IN COMPLEX WITH THE NOT5 SUBUNIT OF THE CCR4-NOT COMPLEX | | Descriptor: | Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA, mRNA, ... | | Authors: | Buschauer, R., Cheng, J., Berninghausen, O., Tesina, P., Becker, T., Beckmann, R. | | Deposit date: | 2019-10-31 | | Release date: | 2020-04-22 | | Last modified: | 2020-04-29 | | Method: | ELECTRON MICROSCOPY (2.8 Å) | | Cite: | The Ccr4-Not complex monitors the translating ribosome for codon optimality.
Science, 368, 2020
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6TNU | | YEAST 80S RIBOSOME IN COMPLEX WITH EIF5A AND DECODING A-SITE AND P-SITE TRNAS. | | Descriptor: | 18S rRNA, mRNA, 40S ribosomal protein S0-A, ... | | Authors: | Buschauer, R., Cheng, J., Berninghausen, O., Tesina, P., Becker, T., Beckmann, R. | | Deposit date: | 2019-12-10 | | Release date: | 2020-04-22 | | Last modified: | 2020-04-29 | | Method: | ELECTRON MICROSCOPY (3.1 Å) | | Cite: | The Ccr4-Not complex monitors the translating ribosome for codon optimality.
Science, 368, 2020
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2WW9 | | CRYO-EM STRUCTURE OF THE ACTIVE YEAST SSH1 COMPLEX BOUND TO THE YEAST 80S RIBOSOME | | Descriptor: | SEC SIXTY-ONE PROTEIN HOMOLOG, PROTEIN TRANSPORT PROTEIN SSS1, PROTEIN TRANSPORT PROTEIN SEB2, ... | | Authors: | Becker, T., Mandon, E., Bhushan, S., Jarasch, A., Armache, J.P., Funes, S., Jossinet, F., Gumbart, J., Mielke, T., Berninghausen, O., Schulten, K., Westhof, E., Gilmore, R., Beckmann, R. | | Deposit date: | 2009-10-22 | | Release date: | 2009-12-08 | | Last modified: | 2018-10-03 | | Method: | ELECTRON MICROSCOPY (8.6 Å) | | Cite: | Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome.
Science, 326, 2009
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2WWA | | CRYO-EM STRUCTURE OF IDLE YEAST SSH1 COMPLEX BOUND TO THE YEAST 80S RIBOSOME | | Descriptor: | SEC SIXTY-ONE PROTEIN HOMOLOG, PROTEIN TRANSPORT PROTEIN SSS1, PROTEIN TRANSPORT PROTEIN SEB2, ... | | Authors: | Becker, T., Mandon, E., Bhushan, S., Jarasch, A., Armache, J.P., Funes, S., Jossinet, F., Gumbart, J., Mielke, T., Berninghausen, O., Schulten, K., Westhof, E., Gilmore, R., Beckmann, R. | | Deposit date: | 2009-10-22 | | Release date: | 2009-12-08 | | Last modified: | 2018-10-03 | | Method: | ELECTRON MICROSCOPY (8.9 Å) | | Cite: | Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome.
Science, 326, 2009
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2WWB | | CRYO-EM STRUCTURE OF THE MAMMALIAN SEC61 COMPLEX BOUND TO THE ACTIVELY TRANSLATING WHEAT GERM 80S RIBOSOME | | Descriptor: | PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA ISOFORM 1, PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA, PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA, ... | | Authors: | Becker, T., Mandon, E., Bhushan, S., Jarasch, A., Armache, J.P., Funes, S., Jossinet, F., Gumbart, J., Mielke, T., Berninghausen, O., Schulten, K., Westhof, E., Gilmore, R., Beckmann, R. | | Deposit date: | 2009-10-22 | | Release date: | 2009-12-08 | | Last modified: | 2018-10-03 | | Method: | ELECTRON MICROSCOPY (6.48 Å) | | Cite: | Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome.
Science, 326, 2009
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3J15 | | MODEL OF RIBOSOME-BOUND ARCHAEAL PELOTA AND ABCE1 | | Descriptor: | Protein pelota, ABC transporter ATP-binding protein, ADENOSINE-5'-DIPHOSPHATE, ... | | Authors: | Becker, T., Franckenberg, S., Wickles, S., Shoemaker, C.J., Anger, A.M., Armache, J.-P., Sieber, H., Ungewickell, C., Berninghausen, O., Daberkow, I., Karcher, A., Thomm, M., Hopfner, K.-P., Green, R., Beckmann, R. | | Deposit date: | 2011-12-12 | | Release date: | 2012-02-22 | | Last modified: | 2018-08-22 | | Method: | ELECTRON MICROSCOPY (6.6 Å) | | Cite: | Structural basis of highly conserved ribosome recycling in eukaryotes and archaea.
Nature, 482, 2012
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3J16 | | MODELS OF RIBOSOME-BOUND DOM34P AND RLI1P AND THEIR RIBOSOMAL BINDING PARTNERS | | Descriptor: | Dom34p, Rli1p, 28S ribosomal RNA, ... | | Authors: | Becker, T., Franckenberg, S., Wickles, S., Shoemaker, C.J., Anger, A.M., Armache, J.-P., Sieber, H., Ungewickell, C., Berninghausen, O., Daberkow, I., Karcher, A., Thomm, M., Hopfner, K.-P., Green, R., Beckmann, R. | | Deposit date: | 2011-12-12 | | Release date: | 2012-02-22 | | Last modified: | 2012-05-30 | | Method: | ELECTRON MICROSCOPY (7.2 Å) | | Cite: | Structural basis of highly conserved ribosome recycling in eukaryotes and archaea.
Nature, 482, 2012
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3OC3 | | CRYSTAL STRUCTURE OF THE MOT1 N-TERMINAL DOMAIN IN COMPLEX WITH TBP | | Descriptor: | HELICASE MOT1, TRANSCRIPTION INITIATION FACTOR TFIID (TFIID-1), 2-(N-MORPHOLINO)-ETHANESULFONIC ACID | | Authors: | Wollmann, P., Cui, S., Viswanathan, R., Berninghausen, O., Wells, M.N., Moldt, M., Witte, G., Butryn, A., Wendler, P., Beckmann, R., Auble, D.T., Hopfner, K.-P. | | Deposit date: | 2010-08-09 | | Release date: | 2011-07-13 | | Last modified: | 2011-07-27 | | Method: | X-RAY DIFFRACTION (3.1 Å) | | Cite: | Structure and mechanism of the Swi2/Snf2 remodeller Mot1 in complex with its substrate TBP.
Nature, 475, 2011
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4CRM | | CRYO-EM OF A PRE-RECYCLING COMPLEX WITH ERF1 AND ABCE1 | | Descriptor: | TRANSLATION INITIATION FACTOR RLI1, EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1, ADENOSINE-5'-TRIPHOSPHATE, ... | | Authors: | Preis, A., Heuer, A., Barrio-Garcia, C., Hauser, A., Eyler, D., Berninghausen, O., Green, R., Becker, T., Beckmann, R. | | Deposit date: | 2014-02-28 | | Release date: | 2014-07-23 | | Last modified: | 2019-11-20 | | Method: | ELECTRON MICROSCOPY (8.75 Å) | | Cite: | Cryoelectron Microscopic Structures of Eukaryotic Translation Termination Complexes Containing Erf1-Erf3 or Erf1-Abce1.
Cell Rep., 8, 2014
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4CRN | | CRYO-EM OF A PRETERMINATION COMPLEX WITH ERF1 AND ERF3 | | Descriptor: | ERF3 IN RIBOSOME BOUND ERF1-ERF3-GDPNP COMPLEX, ERF1 IN RIBOSOME-BOUND ERF1-ERF3-GDPNP COMPLEX, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | | Authors: | Preis, A., Heuer, A., Barrio-Garcia, C., Hauser, A., Eyler, D., Berninghausen, O., Green, R., Becker, T., Beckmann, R. | | Deposit date: | 2014-02-28 | | Release date: | 2014-07-23 | | Last modified: | 2017-08-23 | | Method: | ELECTRON MICROSCOPY (9.1 Å) | | Cite: | Cryoelectron Microscopic Structures of Eukaryotic Translation Termination Complexes Containing Erf1-Erf3 or Erf1-Abce1.
Cell Rep., 8, 2014
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4V4B | | STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROM YEAST OBTAINED BY DOCKING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO A 11.7 A CRYO-EM MAP. | | Descriptor: | 18S ribosomal RNA, Elongation factor 2, 40S ribosomal protein S0-A, ... | | Authors: | Spahn, C.M., Gomez-Lorenzo, M.G., Grassucci, R.A., Jorgensen, R., Andersen, G.R., Beckmann, R., Penczek, P.A., Ballesta, J.P.G., Frank, J. | | Deposit date: | 2004-01-06 | | Release date: | 2014-07-09 | | Last modified: | 2019-12-18 | | Method: | ELECTRON MICROSCOPY (11.7 Å) | | Cite: | Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation.
Embo J., 23, 2004
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5A6U | | NATIVE MAMMALIAN RIBOSOME-BOUND SEC61 PROTEIN-CONDUCTING CHANNEL IN THE 'NON-INSERTING' STATE | | Descriptor: | SEC61A, SEC61B, SEC61G | | Authors: | Pfeffer, S., Burbaum, L., Unverdorben, P., Pech, M., Chen, Y., Zimmermann, R., Beckmann, R., Foerster, F. | | Deposit date: | 2015-07-01 | | Release date: | 2015-10-07 | | Last modified: | 2019-08-21 | | Method: | ELECTRON MICROSCOPY (9 Å) | | Cite: | Structure of the Native Sec61 Protein-Conducting Channel.
Nat.Commun., 6, 2015
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5A7U | | SINGLE-PARTICLE CRYO-EM OF CO-TRANSLATIONAL FOLDED ADR1 DOMAIN INSIDE THE E. COLI RIBOSOME EXIT TUNNEL. | | Descriptor: | REGULATORY PROTEIN ADR1, ZINC ION | | Authors: | Nilsson, O.B., Hedman, R., Marino, J., Wickles, S., Bischoff, L., Johansson, M., Muller-Lucks, A., Trovato, F., Puglisi, J.D., O'Brien, E., Beckmann, R., von Heijne, G. | | Deposit date: | 2015-07-10 | | Release date: | 2015-09-16 | | Last modified: | 2017-08-23 | | Method: | ELECTRON MICROSCOPY (4.8 Å) | | Cite: | Cotranslational Protein Folding Inside the Ribosome Exit Tunnel.
Cell Rep., 12, 2015
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5LL6 | | STRUCTURE OF THE 40S ABCE1 POST-SPLITTING COMPLEX IN RIBOSOME RECYCLING AND TRANSLATION INITIATION | | Descriptor: | 18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ... | | Authors: | Heuer, A., Gerovac, M., Schmidt, C., Trowitzsch, S., Preis, A., Koetter, P., Berninghausen, O., Becker, T., Beckmann, R., Tampe, R. | | Deposit date: | 2016-07-26 | | Release date: | 2017-04-12 | | Last modified: | 2018-11-21 | | Method: | ELECTRON MICROSCOPY (3.9 Å) | | Cite: | Structure of the 40S-ABCE1 post-splitting complex in ribosome recycling and translation initiation.
Nat. Struct. Mol. Biol., 24, 2017
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5LW7 | | S. SOLFATARICUS ABCE1 POST-SPLITTING STATE | | Descriptor: | ABC transporter ATP-binding protein, IRON/SULFUR CLUSTER | | Authors: | Heuer, A., Gerovac, M., Beckmann, R., Tampe, R. | | Deposit date: | 2016-09-15 | | Release date: | 2016-11-16 | | Last modified: | 2019-02-20 | | Method: | ELECTRON MICROSCOPY (17 Å) | | Cite: | Structure of the ribosome post-recycling complex probed by chemical cross-linking and mass spectrometry.
Nat Commun, 7, 2016
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5M5H | | RIBOSOME-BOUND YIDC INSERTASE | | Descriptor: | Membrane protein insertase YidC | | Authors: | Kedrov, A., Wickles, S., Crevenna, A.H., van der Sluis, E., Buschauer, R., Berninghausen, O., Lamb, D.C., Beckmann, R. | | Deposit date: | 2016-10-21 | | Release date: | 2016-12-14 | | Last modified: | 2019-12-11 | | Method: | ELECTRON MICROSCOPY (4.5 Å) | | Cite: | Structural Dynamics of the YidC:Ribosome Complex during Membrane Protein Biogenesis.
Cell Rep, 17, 2016
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5NWY | | 2.9 A CRYO-EM STRUCTURE OF VEMP-STALLED RIBOSOME-NASCENT CHAIN COMPLEX | | Descriptor: | VemP nascent chain, Gln-tRNA, 5S rRNA, ... | | Authors: | Su, T., Cheng, J., Sohmen, D., Hedman, R., Berninghausen, O., von Heijne, G., Wilson, D.N., Beckmann, R. | | Deposit date: | 2017-05-08 | | Release date: | 2017-07-19 | | Last modified: | 2019-12-11 | | Method: | ELECTRON MICROSCOPY (2.93 Å) | | Cite: | The force-sensing peptide VemP employs extreme compaction and secondary structure formation to induce ribosomal stalling.
Elife, 6, 2017
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6I0Y | | TNAC-STALLED RIBOSOME COMPLEX WITH THE TITIN I27 DOMAIN FOLDING CLOSE TO THE RIBOSOMAL EXIT TUNNEL | | Descriptor: | 50S ribosomal protein L24, 50S ribosomal protein L32, 50S ribosomal protein L33, ... | | Authors: | Su, T., Kudva, R., von Heijne, G., Beckmann, R. | | Deposit date: | 2018-10-26 | | Release date: | 2018-12-05 | | Last modified: | 2019-01-23 | | Method: | ELECTRON MICROSCOPY (3.2 Å) | | Cite: | Folding pathway of an Ig domain is conserved on and off the ribosome.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
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