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4V7E
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MODEL OF THE SMALL SUBUNIT RNA BASED ON A 5.5 A CRYO-EM MAP OF TRITICUM AESTIVUM TRANSLATING 80S RIBOSOME
Descriptor:18S ribosomal RNA, P-site tRNA, 5'-R(*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3', ...
Authors:Barrio-Garcia, C., Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.
Deposit date:2013-11-22
Release date:2014-07-09
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (5.5 Å)
Cite:Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion.
Nature, 506, 2014
3IZD
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MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A 6.1 A CRYO-EM MAP OF SACCHAROMYCES CEREVISIAE TRANSLATING 80S RIBOSOME. 3IZD IS A SMALL PART (AN EXPANSION SEGMENT) WHICH IS IN AN ALTERNATIVE CONFORMATION TO WHAT IS IN ALREADY 3IZF.
Descriptor:rRNA expansion segment ES27L in an "out" conformation
Authors:Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.
Deposit date:2010-10-13
Release date:2010-12-01
Last modified:2012-05-30
Method:ELECTRON MICROSCOPY (8.6 Å)
Cite:Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.
Proc.Natl.Acad.Sci.USA, 107, 2010
4V6I
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LOCALIZATION OF THE SMALL SUBUNIT RIBOSOMAL PROTEINS INTO A 6.1 A CRYO-EM MAP OF SACCHAROMYCES CEREVISIAE TRANSLATING 80S RIBOSOME
Descriptor:40S ribosomal protein RACK1 (RACK1), 40S ribosomal protein rpS0 (S2p), 40S ribosomal protein rpS3 (S3p), ...
Authors:Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.
Deposit date:2010-10-12
Release date:2014-07-09
Last modified:2015-03-25
Method:ELECTRON MICROSCOPY (8.8 Å)
Cite:Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.
Proc.Natl.Acad.Sci.USA, 107, 2010
2WW9
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CRYO-EM STRUCTURE OF THE ACTIVE YEAST SSH1 COMPLEX BOUND TO THE YEAST 80S RIBOSOME
Descriptor:SEC SIXTY-ONE PROTEIN HOMOLOG, PROTEIN TRANSPORT PROTEIN SSS1, PROTEIN TRANSPORT PROTEIN SEB2, ...
Authors:Becker, T., Mandon, E., Bhushan, S., Jarasch, A., Armache, J.P., Funes, S., Jossinet, F., Gumbart, J., Mielke, T., Berninghausen, O., Schulten, K., Westhof, E., Gilmore, R., Beckmann, R.
Deposit date:2009-10-22
Release date:2009-12-08
Last modified:2018-10-03
Method:ELECTRON MICROSCOPY (8.6 Å)
Cite:Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome.
Science, 326, 2009
2WWA
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CRYO-EM STRUCTURE OF IDLE YEAST SSH1 COMPLEX BOUND TO THE YEAST 80S RIBOSOME
Descriptor:SEC SIXTY-ONE PROTEIN HOMOLOG, PROTEIN TRANSPORT PROTEIN SSS1, PROTEIN TRANSPORT PROTEIN SEB2, ...
Authors:Becker, T., Mandon, E., Bhushan, S., Jarasch, A., Armache, J.P., Funes, S., Jossinet, F., Gumbart, J., Mielke, T., Berninghausen, O., Schulten, K., Westhof, E., Gilmore, R., Beckmann, R.
Deposit date:2009-10-22
Release date:2009-12-08
Last modified:2018-10-03
Method:ELECTRON MICROSCOPY (8.9 Å)
Cite:Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome.
Science, 326, 2009
2WWB
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CRYO-EM STRUCTURE OF THE MAMMALIAN SEC61 COMPLEX BOUND TO THE ACTIVELY TRANSLATING WHEAT GERM 80S RIBOSOME
Descriptor:PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA ISOFORM 1, PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA, PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA, ...
Authors:Becker, T., Mandon, E., Bhushan, S., Jarasch, A., Armache, J.P., Funes, S., Jossinet, F., Gumbart, J., Mielke, T., Berninghausen, O., Schulten, K., Westhof, E., Gilmore, R., Beckmann, R.
Deposit date:2009-10-22
Release date:2009-12-08
Last modified:2018-10-03
Method:ELECTRON MICROSCOPY (6.48 Å)
Cite:Structure of Monomeric Yeast and Mammalian Sec61 Complexes Interacting with the Translating Ribosome.
Science, 326, 2009
3J15
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MODEL OF RIBOSOME-BOUND ARCHAEAL PELOTA AND ABCE1
Descriptor:Protein pelota, ABC transporter ATP-binding protein, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Becker, T., Franckenberg, S., Wickles, S., Shoemaker, C.J., Anger, A.M., Armache, J.-P., Sieber, H., Ungewickell, C., Berninghausen, O., Daberkow, I., Karcher, A., Thomm, M., Hopfner, K.-P., Green, R., Beckmann, R.
Deposit date:2011-12-12
Release date:2012-02-22
Last modified:2018-08-22
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Structural basis of highly conserved ribosome recycling in eukaryotes and archaea.
Nature, 482, 2012
3J16
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MODELS OF RIBOSOME-BOUND DOM34P AND RLI1P AND THEIR RIBOSOMAL BINDING PARTNERS
Descriptor:Dom34p, Rli1p, 28S ribosomal RNA, ...
Authors:Becker, T., Franckenberg, S., Wickles, S., Shoemaker, C.J., Anger, A.M., Armache, J.-P., Sieber, H., Ungewickell, C., Berninghausen, O., Daberkow, I., Karcher, A., Thomm, M., Hopfner, K.-P., Green, R., Beckmann, R.
Deposit date:2011-12-12
Release date:2012-02-22
Last modified:2012-05-30
Method:ELECTRON MICROSCOPY (7.2 Å)
Cite:Structural basis of highly conserved ribosome recycling in eukaryotes and archaea.
Nature, 482, 2012
3OC3
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CRYSTAL STRUCTURE OF THE MOT1 N-TERMINAL DOMAIN IN COMPLEX WITH TBP
Descriptor:HELICASE MOT1, TRANSCRIPTION INITIATION FACTOR TFIID (TFIID-1), 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
Authors:Wollmann, P., Cui, S., Viswanathan, R., Berninghausen, O., Wells, M.N., Moldt, M., Witte, G., Butryn, A., Wendler, P., Beckmann, R., Auble, D.T., Hopfner, K.-P.
Deposit date:2010-08-09
Release date:2011-07-13
Last modified:2011-07-27
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure and mechanism of the Swi2/Snf2 remodeller Mot1 in complex with its substrate TBP.
Nature, 475, 2011
4CRM
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CRYO-EM OF A PRE-RECYCLING COMPLEX WITH ERF1 AND ABCE1
Descriptor:TRANSLATION INITIATION FACTOR RLI1, EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Preis, A., Heuer, A., Barrio-Garcia, C., Hauser, A., Eyler, D., Berninghausen, O., Green, R., Becker, T., Beckmann, R.
Deposit date:2014-02-28
Release date:2014-07-23
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (8.75 Å)
Cite:Cryoelectron Microscopic Structures of Eukaryotic Translation Termination Complexes Containing Erf1-Erf3 or Erf1-Abce1.
Cell Rep., 8, 2014
4CRN
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CRYO-EM OF A PRETERMINATION COMPLEX WITH ERF1 AND ERF3
Descriptor:ERF3 IN RIBOSOME BOUND ERF1-ERF3-GDPNP COMPLEX, ERF1 IN RIBOSOME-BOUND ERF1-ERF3-GDPNP COMPLEX, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
Authors:Preis, A., Heuer, A., Barrio-Garcia, C., Hauser, A., Eyler, D., Berninghausen, O., Green, R., Becker, T., Beckmann, R.
Deposit date:2014-02-28
Release date:2014-07-23
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (9.1 Å)
Cite:Cryoelectron Microscopic Structures of Eukaryotic Translation Termination Complexes Containing Erf1-Erf3 or Erf1-Abce1.
Cell Rep., 8, 2014
4V4B
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STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROM YEAST OBTAINED BY DOCKING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO A 11.7 A CRYO-EM MAP.
Descriptor:18S ribosomal RNA, Elongation factor 2, 40S ribosomal protein S0-A, ...
Authors:Spahn, C.M., Gomez-Lorenzo, M.G., Grassucci, R.A., Jorgensen, R., Andersen, G.R., Beckmann, R., Penczek, P.A., Ballesta, J.P.G., Frank, J.
Deposit date:2004-01-06
Release date:2014-07-09
Last modified:2015-03-18
Method:ELECTRON MICROSCOPY (11.7 Å)
Cite:Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation.
Embo J., 23, 2004
5A6U
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NATIVE MAMMALIAN RIBOSOME-BOUND SEC61 PROTEIN-CONDUCTING CHANNEL IN THE 'NON-INSERTING' STATE
Descriptor:SEC61A, SEC61B, SEC61G
Authors:Pfeffer, S., Burbaum, L., Unverdorben, P., Pech, M., Chen, Y., Zimmermann, R., Beckmann, R., Foerster, F.
Deposit date:2015-07-01
Release date:2015-10-07
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Structure of the Native Sec61 Protein-Conducting Channel.
Nat.Commun., 6, 2015
5A7U
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SINGLE-PARTICLE CRYO-EM OF CO-TRANSLATIONAL FOLDED ADR1 DOMAIN INSIDE THE E. COLI RIBOSOME EXIT TUNNEL.
Descriptor:REGULATORY PROTEIN ADR1, ZINC ION
Authors:Nilsson, O.B., Hedman, R., Marino, J., Wickles, S., Bischoff, L., Johansson, M., Muller-Lucks, A., Trovato, F., Puglisi, J.D., O'Brien, E., Beckmann, R., von Heijne, G.
Deposit date:2015-07-10
Release date:2015-09-16
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Cotranslational Protein Folding Inside the Ribosome Exit Tunnel.
Cell Rep., 12, 2015
5LL6
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STRUCTURE OF THE 40S ABCE1 POST-SPLITTING COMPLEX IN RIBOSOME RECYCLING AND TRANSLATION INITIATION
Descriptor:18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ...
Authors:Heuer, A., Gerovac, M., Schmidt, C., Trowitzsch, S., Preis, A., Koetter, P., Berninghausen, O., Becker, T., Beckmann, R., Tampe, R.
Deposit date:2016-07-26
Release date:2017-04-12
Last modified:2018-11-21
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structure of the 40S-ABCE1 post-splitting complex in ribosome recycling and translation initiation.
Nat. Struct. Mol. Biol., 24, 2017
5LW7
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S. SOLFATARICUS ABCE1 POST-SPLITTING STATE
Descriptor:ABC transporter ATP-binding protein, IRON/SULFUR CLUSTER
Authors:Heuer, A., Gerovac, M., Beckmann, R., Tampe, R.
Deposit date:2016-09-15
Release date:2016-11-16
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (17 Å)
Cite:Structure of the ribosome post-recycling complex probed by chemical cross-linking and mass spectrometry.
Nat Commun, 7, 2016
5M5H
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RIBOSOME-BOUND YIDC INSERTASE
Descriptor:Membrane protein insertase YidC
Authors:Kedrov, A., Wickles, S., Crevenna, A.H., van der Sluis, E., Buschauer, R., Berninghausen, O., Lamb, D.C., Beckmann, R.
Deposit date:2016-10-21
Release date:2016-12-14
Last modified:2017-08-02
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structural Dynamics of the YidC:Ribosome Complex during Membrane Protein Biogenesis.
Cell Rep, 17, 2016
5NWY
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2.9 A CRYO-EM STRUCTURE OF VEMP-STALLED RIBOSOME-NASCENT CHAIN COMPLEX
Descriptor:VemP nascent chain, Gln-tRNA, 5S rRNA, ...
Authors:Su, T., Cheng, J., Sohmen, D., Hedman, R., Berninghausen, O., von Heijne, G., Wilson, D.N., Beckmann, R.
Deposit date:2017-05-08
Release date:2017-07-19
Last modified:2018-10-17
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:The force-sensing peptide VemP employs extreme compaction and secondary structure formation to induce ribosomal stalling.
Elife, 6, 2017
6I0Y
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TNAC-STALLED RIBOSOME COMPLEX WITH THE TITIN I27 DOMAIN FOLDING CLOSE TO THE RIBOSOMAL EXIT TUNNEL
Descriptor:50S ribosomal protein L24, 50S ribosomal protein L32, 50S ribosomal protein L33, ...
Authors:Su, T., Kudva, R., von Heijne, G., Beckmann, R.
Deposit date:2018-10-26
Release date:2018-12-05
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Folding pathway of an Ig domain is conserved on and off the ribosome.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6FTI
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CRYO-EM STRUCTURE OF THE MAMMALIAN OLIGOSACCHARYLTRANSFERASE BOUND TO SEC61 AND THE PROGRAMMED 80S RIBOSOME
Descriptor:uL2, uL3, Ribosomal protein L4, ...
Authors:Braunger, K., Becker, T., Beckmann, R.
Deposit date:2018-02-22
Release date:2018-03-21
Last modified:2018-11-21
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structural basis for coupling protein transport and N-glycosylation at the mammalian endoplasmic reticulum.
Science, 360, 2018
6FTJ
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CRYO-EM STRUCTURE OF THE MAMMALIAN OLIGOSACCHARYLTRANSFERASE BOUND TO SEC61 AND THE NON-PROGRAMMED 80S RIBOSOME
Descriptor:uL2, uL3, Ribosomal protein L4, ...
Authors:Braunger, K., Becker, T., Beckmann, R.
Deposit date:2018-02-22
Release date:2018-03-21
Last modified:2018-11-21
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Structural basis for coupling protein transport and N-glycosylation at the mammalian endoplasmic reticulum.
Science, 360, 2018
1G61
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CRYSTAL STRUCTURE OF M.JANNASCHII EIF6
Descriptor:TRANSLATION INITIATION FACTOR 6
Authors:Groft, C.M., Beckmann, R., Sali, A., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2000-11-02
Release date:2000-11-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structures of ribosome anti-association factor IF6.
Nat.Struct.Biol., 7, 2000
1G62
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CRYSTAL STRUCTURE OF S.CEREVISIAE EIF6
Descriptor:RIBOSOME ANTI-ASSOCIATION FACTOR EIF6
Authors:Groft, C.M., Beckmann, R., Sali, A., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2000-11-02
Release date:2000-11-22
Last modified:2018-04-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of ribosome anti-association factor IF6.
Nat.Struct.Biol., 7, 2000
1RY1
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STRUCTURE OF THE SIGNAL RECOGNITION PARTICLE INTERACTING WITH THE ELONGATION-ARRESTED RIBOSOME
Descriptor:SRP Alu domain, SRP S domain, SRP RNA, ...
Authors:Halic, M., Becker, T., Pool, M.R., Spahn, C.M., Grassucci, R.A., Frank, J., Beckmann, R.
Deposit date:2003-12-19
Release date:2004-04-20
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Structure of the signal recognition particle interacting with the elongation-arrested ribosome
Nature, 427, 2004
1YSH
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LOCALIZATION AND DYNAMIC BEHAVIOR OF RIBOSOMAL PROTEIN L30E
Descriptor:RNA (28-MER), RNA (34-MER), RNA (101-MER), ...
Authors:Halic, M., Becker, T., Frank, J., Spahn, C.M., Beckmann, R.
Deposit date:2005-02-08
Release date:2005-07-05
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (9.5 Å)
Cite:Localization and dynamic behavior of ribosomal protein L30e
Nat.Struct.Mol.Biol., 12, 2005
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