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3LQB
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BU of 3lqb by Molmil
Crystal structure of the hatching enzyme ZHE1 from the zebrafish Danio rerio
Descriptor: 1,2-ETHANEDIOL, LOC792177 protein, SULFATE ION, ...
Authors:Tanokura, M, Okada, A, Nagata, K, Yasumasu, S, Ohtsuka, J, Iuchi, I.
Deposit date:2010-02-08
Release date:2010-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Crystal structure of zebrafish hatching enzyme 1 from the zebrafish Danio rerio
J.Mol.Biol., 402, 2010
2E3U
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BU of 2e3u by Molmil
Crystal structure analysis of Dim2p from Pyrococcus horikoshii OT3
Descriptor: Hypothetical protein PH1566
Authors:Tanokura, M, Jia, M.Z.
Deposit date:2006-11-29
Release date:2007-10-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of Dim2p: a preribosomal RNA processing factor, from Pyrococcus horikoshii OT3 at 2.30 A
Proteins, 69, 2007
3AEV
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BU of 3aev by Molmil
Crystal structure of a/eIF2alpha-aDim2p-rRNA complex from Pyrococcus horikoshii OT3
Descriptor: Putative uncharacterized protein PH1566, RNA (5'-R(*GP*GP*AP*UP*CP*AP*CP*CP*UP*CP*C)-3'), Translation initiation factor 2 subunit alpha
Authors:Tanokura, M, Jia, M.Z, Nagata, K.
Deposit date:2010-02-10
Release date:2010-04-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:An archaeal Dim2-like protein, aDim2p, forms a ternary complex with a/eIF2 alpha and the 3' end fragment of 16S rRNA
J.Mol.Biol., 398, 2010
5X9A
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BU of 5x9a by Molmil
Crystal structure of calaxin with calcium
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Calaxin
Authors:Shojima, T, Hou, F, Takahashi, Y, Okai, M, Mizuno, K, Inaba, K, Miyakawa, T, Tanokura, M.
Deposit date:2017-03-06
Release date:2018-03-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of a Ca2+-dependent regulator of flagellar motility reveals the open-closed structural transition
Sci Rep, 8, 2018
4XRE
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BU of 4xre by Molmil
Crystal structure of Gnk2 complexed with mannose
Descriptor: Antifungal protein ginkbilobin-2, alpha-D-mannopyranose
Authors:Miyakawa, T, Hatano, K, Miyauchi, Y, Suwa, Y, Sawano, Y, Tanokura, M.
Deposit date:2015-01-21
Release date:2015-02-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.597 Å)
Cite:A secreted protein with plant-specific cysteine-rich motif functions as a mannose-binding lectin that exhibits antifungal activity.
Plant Physiol., 166, 2014
2KSW
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BU of 2ksw by Molmil
Backbone 1H, 13C, and 15N Chemical Shift Assignments for Oryctin
Descriptor: Oryctin
Authors:Horita, S, Ishibashi, J, Nagata, K, Miyakawa, T, Yamakawa, M, Tanokura, M.
Deposit date:2010-01-14
Release date:2010-07-14
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Isolation, cDNA cloning, and structure-based functional characterization of oryctin, a hemolymph protein from the coconut rhinoceros beetle, Oryctes rhinoceros, as a novel serine protease inhibitor
J.Biol.Chem., 285, 2010
2LDS
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BU of 2lds by Molmil
Solution Structure of a Short-chain LaIT1 from the Venom of Scorpion Liocheles australasiae
Descriptor: Insecticidal toxin LaIT1
Authors:Horita, S, Miyakawa, T, Nagata, K, Tanokura, M.
Deposit date:2011-06-01
Release date:2011-09-14
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of a short-chain insecticidal toxin LaIT1 from the venom of scorpion Liocheles australasiae.
Biochem.Biophys.Res.Commun., 411, 2011
5XOD
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BU of 5xod by Molmil
Crystal structure of human Smad2-Ski complex
Descriptor: Mothers against decapentaplegic homolog 2, Ski oncogene
Authors:Miyazono, K, Moriwaki, S, Ito, T, Tanokura, M.
Deposit date:2017-05-27
Release date:2018-03-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.851 Å)
Cite:Hydrophobic patches on SMAD2 and SMAD3 determine selective binding to cofactors
Sci Signal, 11, 2018
5WUT
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BU of 5wut by Molmil
Crystal structure of laminarinase from Flavobacterium sp. UMI-01
Descriptor: ULam111
Authors:Qin, H.M, Miyakawa, Y, Nakamura, A, Tanokura, M.
Deposit date:2016-12-21
Release date:2018-01-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of laminarinase from Flavobacterium sp. UMI-01
To Be Published
4O0L
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BU of 4o0l by Molmil
Crystal structure of NADPH-Dependent 3-Quinuclidinone Reductase from Rhodotorula Rubra
Descriptor: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADPH-dependent 3-quinuclidinone reductase
Authors:Takeshita, D, Tanokura, M.
Deposit date:2013-12-13
Release date:2014-08-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis of stereospecific reduction by quinuclidinone reductase
AMB Express, 4, 2014
2MK4
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BU of 2mk4 by Molmil
Solution structure of ORF2
Descriptor: Open reading frame 2
Authors:Miyakawa, T, Kobayashi, H, Tashiro, M, Yamanaka, H, Tanokura, M.
Deposit date:2014-01-24
Release date:2015-03-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Basis for Action of the External Chaperone for a Propeptide-deficient Serine Protease from Aeromonas sobria.
J.Biol.Chem., 290, 2015
4WFJ
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BU of 4wfj by Molmil
Crystal structure of PET-degrading cutinase Cut190 S226P mutant in Ca(2+)-bound state at 1.75 angstrom resolution
Descriptor: CALCIUM ION, CHLORIDE ION, Cutinase
Authors:Miyakawa, T, Mizushima, H, Ohtsuka, J, Oda, M, Kawai, F, Tanokura, M.
Deposit date:2014-09-15
Release date:2014-12-24
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural basis for the Ca(2+)-enhanced thermostability and activity of PET-degrading cutinase-like enzyme from Saccharomonospora viridis AHK190.
Appl.Microbiol.Biotechnol., 99, 2015
4WFK
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BU of 4wfk by Molmil
Crystal structure of PET-degrading cutinase Cut190 S226P mutant in Ca(2+)-bound state at 2.35 angstrom resolution
Descriptor: CALCIUM ION, CHLORIDE ION, Cutinase
Authors:Miyakawa, T, Mizushima, H, Ohtsuka, J, Oda, M, Kawai, F, Tanokura, M.
Deposit date:2014-09-15
Release date:2014-12-24
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis for the Ca(2+)-enhanced thermostability and activity of PET-degrading cutinase-like enzyme from Saccharomonospora viridis AHK190.
Appl.Microbiol.Biotechnol., 99, 2015
4WFI
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BU of 4wfi by Molmil
Crystal structure of PET-degrading cutinase Cut190 S226P mutant in Ca(2+)-free state
Descriptor: Cutinase
Authors:Miyakawa, T, Mizushima, H, Ohtsuka, J, Oda, M, Kawai, F, Tanokura, M.
Deposit date:2014-09-15
Release date:2014-12-24
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (1.446 Å)
Cite:Structural basis for the Ca(2+)-enhanced thermostability and activity of PET-degrading cutinase-like enzyme from Saccharomonospora viridis AHK190.
Appl.Microbiol.Biotechnol., 99, 2015
2RR7
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BU of 2rr7 by Molmil
Microtubule Binding Domain of DYNEIN-C
Descriptor: Dynein heavy chain 9
Authors:Kato, Y, Yagi, T, Ohki, S, Burgess, S, Honda, S, Kamiya, R, Tanokura, M.
Deposit date:2010-06-04
Release date:2011-06-08
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure of the microtubule-binding domain of flagellar dynein
Structure, 22, 2014
5TLC
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BU of 5tlc by Molmil
Crystal structure of BdsA from Bacillus subtilis WU-S2B
Descriptor: Dibenzothiophene desulfurization enzyme A
Authors:Okai, M, Lee, W.C, Tanokura, M.
Deposit date:2016-10-11
Release date:2017-05-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of dibenzothiophene sulfone monooxygenase BdsA from Bacillus subtilis WU-S2B
Proteins, 85, 2017
5WVU
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BU of 5wvu by Molmil
Crystal structure of carboxypeptidase from Thermus thermophilus
Descriptor: GLYCEROL, Thermostable carboxypeptidase 1, ZINC ION
Authors:Okai, M, Nagata, K, Tanokura, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2016-12-29
Release date:2017-02-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Insight into the transition between the open and closed conformations of Thermus thermophilus carboxypeptidase.
Biochem. Biophys. Res. Commun., 484, 2017
3JRS
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BU of 3jrs by Molmil
Crystal structure of (+)-ABA-bound PYL1
Descriptor: (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid, Putative uncharacterized protein At5g46790
Authors:Miyazono, K, Miyakawa, T, Sawano, Y, Kubota, K, Tanokura, M.
Deposit date:2009-09-08
Release date:2009-11-03
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis of abscisic acid signalling
Nature, 462, 2009
3JRQ
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BU of 3jrq by Molmil
Crystal structure of (+)-ABA-bound PYL1 in complex with ABI1
Descriptor: (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid, Protein phosphatase 2C 56, Putative uncharacterized protein At5g46790
Authors:Miyazono, K, Miyakawa, T, Sawano, Y, Kubota, K, Tanokura, M.
Deposit date:2009-09-08
Release date:2009-11-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of abscisic acid signalling
Nature, 462, 2009
1IYY
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BU of 1iyy by Molmil
NMR STRUCTURE OF Gln25-RIBONUCLEASE T1, 24 STRUCTURES
Descriptor: RIBONUCLEASE T1
Authors:Hatano, K, Kojima, M, Suzuki, E, Tanokura, M, Takahashi, K.
Deposit date:2002-09-12
Release date:2003-10-07
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Determination of the NMR structure of Gln25-ribonuclease T1.
Biol. Chem., 384, 2003
9IHS
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BU of 9ihs by Molmil
Microbial transglutaminase mutant - D3C/G283C
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Suzuki, M, Date, M, Kashiwagi, T, Takahashi, K, Nakamura, A, Tanokura, M, Suzuki, E, Yokoyama, K.
Deposit date:2024-06-18
Release date:2024-09-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:Random mutagenesis and disulfide bond formation improved thermostability in microbial transglutaminase.
Appl.Microbiol.Biotechnol., 2024
3LNQ
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BU of 3lnq by Molmil
Structure of Aristaless homeodomain in complex with DNA
Descriptor: 5'-D(*CP*CP*CP*TP*AP*AP*TP*TP*AP*AP*AP*CP*CP*C)-3', 5'-D(*GP*GP*GP*TP*TP*TP*AP*AP*TP*TP*AP*GP*GP*G)-3', ACETATE ION, ...
Authors:Takamura, Y, Miyazono, K, Nagata, K, Saigo, K, Kojima, T, Tanokura, M.
Deposit date:2010-02-02
Release date:2010-04-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless
Embo J., 29, 2010
3MGF
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BU of 3mgf by Molmil
Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 7.5
Descriptor: Fluorescent protein
Authors:Ebisawa, T, Yamamura, A, Ohtsuka, J, Kameda, Y, Hayakawa, K, Nagata, K, Tanokura, M.
Deposit date:2010-04-06
Release date:2011-03-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 7.5
To be Published
3D7A
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BU of 3d7a by Molmil
Crystal structure of DUF54 family protein PH1010 from hyperthermophilic archaea Pyrococcus horikoshii OT3
Descriptor: UPF0201 protein PH1010
Authors:Shirokane, M, Miyazono, K.I, Sawano, Y, Tanokura, M.
Deposit date:2008-05-20
Release date:2008-12-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the DUF54 family protein PH1010 from hyperthermophilic archaea Pyrococcus horikoshii OT3.
Proteins, 74, 2008
2GXG
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BU of 2gxg by Molmil
Crystal structure of EmrR homolog from hyperthermophilic archaea Sulfolobus tokodaii strain7
Descriptor: 146aa long hypothetical transcriptional regulator
Authors:Miyazono, K, Tsujimura, M, Kawarabayasi, Y, Tanokura, M.
Deposit date:2006-05-08
Release date:2007-03-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of archaeal homolog of multi drug resistance repressor protein, EmrR, from hyperthermophilic archaea Sulfolobus tokodaii strain7
To be Published

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