Author results

3VGW
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CRYSTAL STRUCTURE OF MONOAC-BIOTIN-AVIDIN COMPLEX
Descriptor:Avidin, 5-[(3aS,4S,6aR)-1-acetyl-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Terai, T., Maki, E., Sugiyama, S., Takahashi, Y., Matsumura, H., Mori, Y., Nagano, T.
Deposit date:2011-08-21
Release date:2011-12-28
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Rational development of caged-biotin protein-labeling agents and some applications in live cells
Chem.Biol., 18, 2011
3VHH
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CRYSTAL STRUCTURE OF DIME-BIOTIN-AVIDIN COMPLEX
Descriptor:Avidin, 5-[(3aS,4S,6aR)-1,3-dimethyl-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Terai, T., Maki, E., Sugiyama, S., Takahashi, Y., Matsumura, H., Mori, Y., Nagano, T.
Deposit date:2011-08-25
Release date:2011-12-28
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Rational development of caged-biotin protein-labeling agents and some applications in live cells
Chem.Biol., 18, 2011
3VHI
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CRYSTAL STRUCTURE OF MONOZ-BIOTIN-AVIDIN COMPLEX
Descriptor:Avidin, 5-{(3aS,4S,6aR)-1-[(benzyloxy)carbonyl]-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl}pentanoic acid, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Terai, T., Maki, E., Sugiyama, S., Takahashi, Y., Matsumura, H., Mori, Y., Nagano, T.
Deposit date:2011-08-25
Release date:2011-12-28
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Rational development of caged-biotin protein-labeling agents and some applications in live cells
Chem.Biol., 18, 2011
3VHM
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CRYSTAL STRUCTURE OF NPC-BIOTIN-AVIDIN COMPLEX
Descriptor:Avidin, 5-[(3aS,4R,6aR)-1-{[(1R)-1-(6-nitro-1,3-benzodioxol-5-yl)ethoxy]carbonyl}-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Terai, T., Maki, E., Sugiyama, S., Takahashi, Y., Matsumura, H., Mori, Y., Nagano, T.
Deposit date:2011-08-29
Release date:2011-12-28
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Rational development of caged-biotin protein-labeling agents and some applications in live cells
Chem.Biol., 18, 2011
5H3Z
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CRYSTAL STRUCTURE OF 1,2-BETA-OLIGOGLUCAN PHOSPHORYLASE FROM LACHNOCLOSTRIDIUM PHYTOFERMENTANS
Descriptor:Uncharacterized protein, GLYCEROL, CALCIUM ION, ...
Authors:Nakajima, M., Tanaka, N., Furukawa, N., Nihira, T., Kodutsumi, Y., Takahashi, Y., Sugimoto, N., Miyanaga, A., Fushinobu, S., Taguchi, H., Nakai, H.
Deposit date:2016-10-28
Release date:2017-03-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mechanistic insight into the substrate specificity of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans
Sci Rep, 7, 2017
5H40
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CRYSTAL STRUCTURE OF 1,2-BETA-OLIGOGLUCAN PHOSPHORYLASE FROM LACHNOCLOSTRIDIUM PHYTOFERMENTANS IN COMPLEX WITH SOPHOROSE
Descriptor:Uncharacterized protein, GLYCEROL, CALCIUM ION, ...
Authors:Nakajima, M., Tanaka, N., Furukawa, N., Nihira, T., Kodutsumi, Y., Takahashi, Y., Sugimoto, N., Miyanaga, A., Fushinobu, S., Taguchi, H., Nakai, H.
Deposit date:2016-10-28
Release date:2017-03-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Mechanistic insight into the substrate specificity of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans
Sci Rep, 7, 2017
5H41
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CRYSTAL STRUCTURE OF 1,2-BETA-OLIGOGLUCAN PHOSPHORYLASE FROM LACHNOCLOSTRIDIUM PHYTOFERMENTANS IN COMPLEX WITH SOPHOROSE, ISOFAGOMINE, SULFATE ION
Descriptor:Uncharacterized protein, BETA-D-GLUCOSE, ALPHA-D-GLUCOSE, ...
Authors:Nakajima, M., Tanaka, N., Furukawa, N., Nihira, T., Kodutsumi, Y., Takahashi, Y., Sugimoto, N., Miyanaga, A., Fushinobu, S., Taguchi, H., Nakai, H.
Deposit date:2016-10-28
Release date:2017-03-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mechanistic insight into the substrate specificity of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans
Sci Rep, 7, 2017
5H42
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CRYSTAL STRUCTURE OF 1,2-BETA-OLIGOGLUCAN PHOSPHORYLASE FROM LACHNOCLOSTRIDIUM PHYTOFERMENTANS IN COMPLEX WITH ALPHA-D-GLUCOSE-1-PHOSPHATE
Descriptor:Uncharacterized protein, ALPHA-D-GLUCOSE-1-PHOSPHATE, ALPHA-D-GLUCOSE
Authors:Nakajima, M., Tanaka, N., Furukawa, N., Nihira, T., Kodutsumi, Y., Takahashi, Y., Sugimoto, N., Miyanaga, A., Fushinobu, S., Taguchi, H., Nakai, H.
Deposit date:2016-10-28
Release date:2017-03-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Mechanistic insight into the substrate specificity of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans
Sci Rep, 7, 2017
5X9A
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CRYSTAL STRUCTURE OF CALAXIN WITH CALCIUM
Descriptor:Calaxin, CALCIUM ION, 1,2-ETHANEDIOL
Authors:Shojima, T., Hou, F., Takahashi, Y., Okai, M., Mizuno, K., Inaba, K., Miyakawa, T., Tanokura, M.
Deposit date:2017-03-06
Release date:2018-03-14
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of a Ca2+-dependent regulator of flagellar motility reveals the open-closed structural transition
Sci Rep, 8, 2018
5YPX
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CRYSTAL STRUCTURE OF CALAXIN WITH MAGNESIUM
Descriptor:Calaxin, MAGNESIUM ION
Authors:Shojima, T., Hou, F., Takahashi, Y., Okai, M., Mizuno, K., Inaba, K., Miyakawa, T., Tanokura, M.
Deposit date:2017-11-04
Release date:2018-03-14
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Crystal structure of a Ca2+-dependent regulator of flagellar motility reveals the open-closed structural transition
Sci Rep, 8, 2018
1WTF
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CRYSTAL STRUCTURE OF BACILLUS THERMOPROTEOLYTICUS FERREDOXIN VARIANTS CONTAINING UNEXPECTED [3FE-4S] CLUSTER THAT IS LINKED TO COENZYME A AT 1.6 A RESOLUTION
Descriptor:Ferredoxin, SULFATE ION, COENZYME A, ...
Authors:Shirakawa, T., Takahashi, Y., Wada, K., Hirota, J., Takao, T., Ohmori, D., Fukuyama, K.
Deposit date:2004-11-22
Release date:2005-11-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Identification of variant molecules of Bacillus thermoproteolyticus ferredoxin: crystal structure reveals bound coenzyme A and an unexpected [3Fe-4S] cluster associated with a canonical [4Fe-4S] ligand motif
Biochemistry, 44, 2005
3VOT
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CRYSTAL STRUCTURE OF L-AMINO ACID LIGASE FROM BACILLUS LICHENIFORMIS
Descriptor:L-amino acid ligase, BL00235, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Suzuki, M., Takahashi, Y., Noguchi, A., Arai, T., Yagasaki, M., Kino, K., Saito, J.
Deposit date:2012-02-08
Release date:2012-11-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structure of L-amino-acid ligase from Bacillus licheniformis
Acta Crystallogr.,Sect.D, 68, 2012
4ZO6
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CRYSTAL STRUCTURE OF MUTANT (D270A) BETA-GLUCOSIDASE FROM LISTERIA INNOCUA IN COMPLEX WITH CELLOBIOSE
Descriptor:Lin1840 protein, BETA-D-GLUCOSE, GLYCEROL, ...
Authors:Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.
Deposit date:2015-05-06
Release date:2016-05-18
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua
Plos One, 11, 2016
4ZO7
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CRYSTAL STRUCTURE OF MUTANT (D270A) BETA-GLUCOSIDASE FROM LISTERIA INNOCUA IN COMPLEX WITH GENTIOBIOSE
Descriptor:Lin1840 protein, BETA-D-GLUCOSE, MAGNESIUM ION, ...
Authors:Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.
Deposit date:2015-05-06
Release date:2016-05-18
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua
Plos One, 11, 2016
4ZO8
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CRYSTAL STRUCTURE OF MUTANT (D270A) BETA-GLUCOSIDASE FROM LISTERIA INNOCUA IN COMPLEX WITH SOPHOROSE
Descriptor:Lin1840 protein, MAGNESIUM ION, BETA-D-GLUCOSE
Authors:Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.
Deposit date:2015-05-06
Release date:2016-05-18
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua
Plos One, 11, 2016
4ZO9
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CRYSTAL STRUCTURE OF MUTANT (D270A) BETA-GLUCOSIDASE FROM LISTERIA INNOCUA IN COMPLEX WITH LAMINARIBIOSE
Descriptor:Lin1840 protein, MAGNESIUM ION, GLYCEROL, ...
Authors:Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.
Deposit date:2015-05-06
Release date:2016-05-18
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua
Plos One, 11, 2016
4ZOA
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE FROM LISTERIA INNOCUA IN COMPLEX WITH ISOFAGOMINE
Descriptor:Lin1840 protein, 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE, MAGNESIUM ION, ...
Authors:Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.
Deposit date:2015-05-06
Release date:2016-05-18
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua
Plos One, 11, 2016
4ZOB
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE FROM LISTERIA INNOCUA IN COMPLEX WITH GLUCONOLACTONE
Descriptor:Lin1840 protein, (3S,4R,5R,6S)-3,4,5-TRIHYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-2-ONE, MAGNESIUM ION, ...
Authors:Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.
Deposit date:2015-05-06
Release date:2016-05-18
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua
Plos One, 11, 2016
4ZOC
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CRYSTAL STRUCTURE OF MUTANT (D270A) BETA-GLUCOSIDASE FROM LISTERIA INNOCUA IN COMPLEX WITH SOPHOROTRIOSE
Descriptor:Lin1840 protein, GLYCEROL, MAGNESIUM ION, ...
Authors:Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.
Deposit date:2015-05-06
Release date:2016-05-18
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua
Plos One, 11, 2016
4ZOD
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE FROM LISTERIA INNOCUA IN COMPLEX WITH GLUCOSE
Descriptor:Lin1840 protein, BETA-D-GLUCOSE, MAGNESIUM ION, ...
Authors:Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.
Deposit date:2015-05-06
Release date:2016-05-18
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua
Plos One, 11, 2016
4ZOE
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CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE FROM LISTERIA INNOCUA
Descriptor:Lin1840 protein, MAGNESIUM ION, GLYCEROL
Authors:Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.
Deposit date:2015-05-06
Release date:2016-05-18
Last modified:2016-06-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Functional and Structural Analysis of a beta-Glucosidase Involved in beta-1,2-Glucan Metabolism in Listeria innocua
Plos One, 11, 2016
5WT2
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NIFS FROM HELICOBACTER PYLORI
Descriptor:Cysteine desulfurase IscS, PYRIDOXAL-5'-PHOSPHATE, ISOPROPYL ALCOHOL, ...
Authors:Fujishiro, T., Takahashi, Y.
Deposit date:2016-12-09
Release date:2017-12-13
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Structural snapshot of cysteine desulfurase NifS with L-cysteine in initiation of catalysis
To be published
5WT5
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L-HOMOCYSTEINE-BOUND NIFS FROM HELICOBACTER PYLORI
Descriptor:Cysteine desulfurase IscS, ISOPROPYL ALCOHOL, 2-AMINO-4-MERCAPTO-BUTYRIC ACID
Authors:Fujishiro, T., Takahashi, Y.
Deposit date:2016-12-09
Release date:2017-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural snapshot of cysteine desulfurase NifS with L-cysteine in initiation of catalysis
to be published
5WT6
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CYSTEINE PERSULFIDE INTERMEDIATE OF NIFS FROM HELICOBACTER PYLORI
Descriptor:Cysteine desulfurase IscS, ISOPROPYL ALCOHOL, CHLORIDE ION, ...
Authors:Fujishiro, T., Nakamura, R., Takahashi, Y.
Deposit date:2016-12-09
Release date:2017-12-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural snapshot of cysteine desulfurase NifS with L-cysteine in initiation of catalysis
To be published
5XT5
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SUFS-SUFU COMPLEX FROM BACILLUS SUBTILIS
Descriptor:Zinc-dependent sulfurtransferase SufU, Cysteine desulfurase SufS, ZINC ION, ...
Authors:Fujishiro, T., Takahashi, Y.
Deposit date:2017-06-17
Release date:2017-12-20
Last modified:2018-01-17
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Zinc-Ligand Swapping Mediated Complex Formation and Sulfur Transfer between SufS and SufU for Iron-Sulfur Cluster Biogenesis in Bacillus subtilis
J. Am. Chem. Soc., 139, 2017