Author results

6IOQ
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THE LIGAND BINDING DOMAIN OF MLP24 WITH GLYCINE
Descriptor:Methyl-accepting chemotaxis protein, GLYCINE, CALCIUM ION
Authors:Takahashi, Y., Sumita, K., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2018-10-31
Release date:2019-03-06
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (2.143 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOR
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THE LIGAND BINDING DOMAIN OF MLP24 WITH ASPARAGINE
Descriptor:Methyl-accepting chemotaxis protein, ASPARAGINE, CALCIUM ION
Authors:Takahashi, Y., Sumita, K., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2018-10-31
Release date:2019-03-20
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOS
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THE LIGAND BINDING DOMAIN OF MLP24 WITH PROLINE
Descriptor:Methyl-accepting chemotaxis protein, PROLINE, CALCIUM ION, ...
Authors:Takahashi, Y., Sumita, K., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2018-10-31
Release date:2019-03-06
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOT
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THE LIGAND BINDING DOMAIN OF MLP24 WITH ARGININE
Descriptor:Methyl-accepting chemotaxis protein, ARGININE, CALCIUM ION
Authors:Takahashi, Y., Sumita, K., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2018-10-31
Release date:2019-03-20
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOU
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THE LIGAND BINDING DOMAIN OF MLP24 WITH SERINE
Descriptor:Methyl-accepting chemotaxis protein, SERINE, CALCIUM ION, ...
Authors:Takahashi, Y., Sumita, K., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2018-10-31
Release date:2019-03-06
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
6IOV
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THE LIGAND BINDING DOMAIN OF MLP37 WITH ARGININE
Descriptor:Methyl-accepting chemotaxis (MCP) signaling domain protein, ARGININE
Authors:Takahashi, Y., Sumita, K., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2018-10-31
Release date:2019-11-06
Method:X-RAY DIFFRACTION (2.351 Å)
Cite:Calcium ion modulates amino acid sensing of the chemoreceptor Mlp24 of Vibrio cholerae
To Be Published
5AVE
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THE LIGAND BINDING DOMAIN OF MLP37 WITH SERINE
Descriptor:Methyl-accepting chemotaxis (MCP) signaling domain protein, SERINE
Authors:Takahashi, Y., Sumita, K., Uchida, Y., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2015-06-15
Release date:2016-03-02
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Identification of a Vibrio cholerae chemoreceptor that senses taurine and amino acids as attractants
Sci Rep, 6, 2016
5AVF
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THE LIGAND BINDING DOMAIN OF MLP37 WITH TAURINE
Descriptor:Methyl-accepting chemotaxis (MCP) signaling domain protein, 2-AMINOETHANESULFONIC ACID
Authors:Takahashi, Y., Sumita, K., Uchida, Y., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2015-06-15
Release date:2016-06-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Identification of a Vibrio cholerae chemoreceptor that senses taurine and amino acids as attractants
Sci Rep, 6, 2016
5ETY
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CRYSTAL STRUCTURE OF HUMAN TANKYRASE-1 BOUND TO K-756
Descriptor:Tankyrase-1, ZINC ION, 3-[[1-(6,7-dimethoxyquinazolin-4-yl)piperidin-4-yl]methyl]-1,4-dihydroquinazolin-2-one
Authors:Takahashi, Y., Miyagi, H., Suzuki, M., Saito, J.
Deposit date:2015-11-18
Release date:2016-06-22
Last modified:2016-07-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The Discovery and Characterization of K-756, a Novel Wnt/ beta-Catenin Pathway Inhibitor Targeting Tankyrase
Mol.Cancer Ther., 15, 2016
6AD9
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CRYSTAL STRUCTURE OF PPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH DIBENZOOXEPINE DERIVATIVE COMPOUND-9
Descriptor:Peroxisome proliferator-activated receptor gamma, 12-mer peptide from Peroxisome proliferator-activated receptor gamma coactivator 1-alpha, 3-[(1E)-1-{8-[(4-methyl-2-propyl-1H-benzimidazol-1-yl)methyl]dibenzo[b,e]oxepin-11(6H)-ylidene}ethyl]-1,2,4-oxadiazol-5(4H)-one
Authors:Takahashi, Y., Suzuki, M., Yamamoto, K., Saito, J.
Deposit date:2018-07-31
Release date:2018-11-14
Last modified:2018-12-05
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Development of Dihydrodibenzooxepine Peroxisome Proliferator-Activated Receptor (PPAR) Gamma Ligands of a Novel Binding Mode as Anticancer Agents: Effective Mimicry of Chiral Structures by Olefinic E/ Z-Isomers.
J. Med. Chem., 61, 2018
6IOP
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THE LIGAND BINDING DOMAIN OF MLP24
Descriptor:Methyl-accepting chemotaxis protein, CALCIUM ION, ACETATE ION, ...
Authors:Sumita, K., Takahashi, Y., Nishiyama, S., Kawagishi, I., Imada, K.
Deposit date:2018-10-31
Release date:2019-03-20
Last modified:2019-04-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Calcium Ions Modulate Amino Acid Sensing of the Chemoreceptor Mlp24 ofVibrio cholerae.
J. Bacteriol., 201, 2019
1IQZ
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OXIDIZED [4FE-4S] FERREDOXIN FROM BACILLUS THERMOPROTEOLYTICUS (FORM I)
Descriptor:Ferredoxin, SULFATE ION, IRON/SULFUR CLUSTER
Authors:Fukuyama, K., Okada, T., Kakuta, Y., Takahashi, Y.
Deposit date:2001-08-30
Release date:2002-02-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (0.92 Å)
Cite:Atomic resolution structures of oxidized [4Fe-4S] ferredoxin from Bacillus thermoproteolyticus in two crystal forms: systematic distortion of [4Fe-4S] cluster in the protein.
J.Mol.Biol., 315, 2002
1IR0
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OXIDIZED [4FE-4S] FERREDOXIN FROM BACILLUS THERMOPROTEOLYTICUS (FORM II)
Descriptor:Ferredoxin, SULFATE ION, IRON/SULFUR CLUSTER
Authors:Fukuyama, K., Okada, T., Kakuta, Y., Takahashi, Y.
Deposit date:2001-08-30
Release date:2002-02-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1 Å)
Cite:Atomic resolution structures of oxidized [4Fe-4S] ferredoxin from Bacillus thermoproteolyticus in two crystal forms: systematic distortion of [4Fe-4S] cluster in the protein.
J.Mol.Biol., 315, 2002
1UJ8
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STRUCTURES OF ORF3 IN TWO CRYSTAL FORMS, A MEMBER OF ISC MACHINERY OF E. COLI INVOLVED IN THE ASSEMBLY OF IRON-SULFUR CLUSTERS
Descriptor:Hypothetical protein yfhJ
Authors:Shimomura, Y., Takahashi, Y., Fukuyama, K.
Deposit date:2003-07-29
Release date:2005-02-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of Escherichia coli YfhJ protein, a member of the ISC machinery involved in assembly of iron-sulfur clusters.
Proteins, 60, 2005
2D2A
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CRYSTAL STRUCTURE OF ESCHERICHIA COLI SUFA INVOLVED IN BIOSYNTHESIS OF IRON-SULFUR CLUSTERS
Descriptor:SufA protein
Authors:Wada, K., Hasegawa, Y., Gong, Z., Minami, Y., Fukuyama, K., Takahashi, Y.
Deposit date:2005-09-05
Release date:2005-12-13
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of Escherichia coli SufA involved in biosynthesis of iron-sulfur clusters: Implications for a functional dimer
Febs Lett., 579, 2005
2D3W
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CRYSTAL STRUCTURE OF ESCHERICHIA COLI SUFC, AN ATPASE COMPENENT OF THE SUF IRON-SULFUR CLUSTER ASSEMBLY MACHINERY
Descriptor:Probable ATP-dependent transporter sufC
Authors:Kitaoka, S., Wada, K., Hasegawa, Y., Minami, Y., Takahashi, Y., Fukuyama, K.
Deposit date:2005-10-03
Release date:2006-01-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of Escherichia coli SufC, an ABC-type ATPase component of the SUF iron-sulfur cluster assembly machinery
Febs Lett., 580, 2006
1I7H
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CRYSTAL STURCUTURE OF FDX
Descriptor:FERREDOXIN, FE2/S2 (INORGANIC) CLUSTER
Authors:Kakuta, Y., Horio, T., Takahashi, Y., Fukuyama, K.
Deposit date:2001-03-09
Release date:2002-03-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of Escherichia coli Fdx, an adrenodoxin-type ferredoxin involved in the assembly of iron-sulfur clusters.
Biochemistry, 40, 2001
1KW3
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CRYSTAL STRUCTURE OF 2,3-DIHYDROXYBIPHENYAL DIOXYGENASE (BPHC) AT 1.45 A RESOLUTION
Descriptor:2,3-Dihydroxybiphenyl dioxygenase, FE (II) ION, (4S)-2-METHYL-2,4-PENTANEDIOL
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-28
Release date:2003-01-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KW6
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CRYSTAL STRUCTURE OF 2,3-DIHYDROXYBIPHENYL DIOXYGENASE (BPHC) IN COMPLEX WITH 2,3-DIHYDROXYBIPHENYL AT 1.45 A RESOLUTION
Descriptor:2,3-Dihydroxybiphenyl dioxygenase, FE (II) ION, BIPHENYL-2,3-DIOL, ...
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-28
Release date:2003-01-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KW8
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CRYSTAL STRUCTURE OF BPHC-2,3-DIHYDROXYBIPHENYL-NO COMPLEX
Descriptor:2,3-Dihydroxybiphenyl dioxygenase, FE (II) ION, NITRIC OXIDE, ...
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KW9
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CRYSTAL STRUCTURE OF 2,3-DIHYDROXYBIPHENYL DIOXYGENASE (BPHC) IN COMPLEX WITH 2,3-DIHYDROXYBIPHENYL AT 2.0A RESOLUTION
Descriptor:2,3-Dihydroxybiphenyl dioxygenase, FE (II) ION, BIPHENYL-2,3-DIOL
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KWB
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CRYSTAL STRUCTURE OF THE HIS145ALA MUTANT OF 2,3-DIHYDROXYBIPHENY DIOXYGENASE (BPHC)
Descriptor:2,3-Dihydroxybiphenyl dioxygenase
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
1KWC
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THE HIS145ALA MUTANT OF 2,3-DIHYDROXYBIPHENYL DIOXYGENASE IN COMPLEX WITH 2,3-DIHYDROXYBIPHENYL
Descriptor:2,3-dihydroxybiphenyl dioxygenase, BIPHENYL-2,3-DIOL
Authors:Sato, N., Uragami, Y., Nishizaki, T., Takahashi, Y., Sazaki, G., Sugimoto, K., Nonaka, T., Masai, E., Fukuda, M., Senda, T.
Deposit date:2002-01-29
Release date:2003-01-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of the Reaction Intermediate and its Homologue of an Extradiol-cleaving Catecholic Dioxygenase
J.Mol.Biol., 321, 2002
2D1E
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CRYSTAL STRUCTURE OF PCYA-BILIVERDIN COMPLEX
Descriptor:Phycocyanobilin:ferredoxin oxidoreductase, SODIUM ION, BILIVERDINE IX ALPHA
Authors:Hagiwara, Y., Sugishima, M., Takahashi, Y., Fukuyama, K.
Deposit date:2005-08-17
Release date:2006-01-24
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Crystal structure of phycocyanobilin:ferredoxin oxidoreductase in complex with biliverdin IXalpha, a key enzyme in the biosynthesis of phycocyanobilin
Proc.Natl.Acad.Sci.Usa, 103, 2006
2DKE
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CRYSTAL STRUCTURE OF SUBSTRATE-FREE FORM OF PCYA
Descriptor:Phycocyanobilin:ferredoxin oxidoreductase, CHLORIDE ION
Authors:Hagiwara, Y., Sugishima, M., Takahashi, Y., Fukuyama, K.
Deposit date:2006-04-10
Release date:2006-07-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Induced-fitting and electrostatic potential change of PcyA upon substrate binding demonstrated by the crystal structure of the substrate-free form
Febs Lett., 580, 2006