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7CMG
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BU of 7cmg by Molmil
The Structure of the periplasmic domain of PorM
Descriptor: Por secretion system protein porM/gldM
Authors:Sato, K, Okada, K, Nakayam, K, Imada, K.
Deposit date:2020-07-27
Release date:2020-09-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:PorM, a core component of bacterial type IX secretion system, forms a dimer with a unique kinked-rod shape.
Biochem.Biophys.Res.Commun., 532, 2020
2VN3
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BU of 2vn3 by Molmil
Nitrite Reductase from Alcaligenes xylosoxidans
Descriptor: COPPER (II) ION, DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE, SULFATE ION, ...
Authors:Sato, K, Firbank, S.J, Li, C, Banfield, M.J, Dennison, C.
Deposit date:2008-01-30
Release date:2008-12-23
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:The Importance of the Long Type 1 Copper-Binding Loop of Nitrite Reductase for Structure and Function.
Chemistry, 14, 2008
2VMJ
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BU of 2vmj by Molmil
Type 1 Copper-Binding Loop of Nitrite Reductase mutant: 130- CAPEGMVPWHVVSGM-144 to 130-CTPHPFM-136
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE, ZINC ION
Authors:Sato, K, Firbank, S.J, Li, C, Banfield, M.J, Dennison, C.
Deposit date:2008-01-28
Release date:2008-12-23
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Importance of the Long Type 1 Copper-Binding Loop of Nitrite Reductase for Structure and Function.
Chemistry, 14, 2008
1K37
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BU of 1k37 by Molmil
NMR Structure of human Epiregulin
Descriptor: Epiregulin
Authors:Sato, K, Miura, K, Tada, M, Aizawa, T, Miyamoto, K, Kawano, K.
Deposit date:2001-10-02
Release date:2003-09-30
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of epiregulin and the effect of its C-terminal domain for receptor binding affinity
Febs Lett., 553, 2003
1K36
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BU of 1k36 by Molmil
NMR Structure of human Epiregulin
Descriptor: Epiregulin
Authors:Sato, K, Miura, K, Tada, M, Aizawa, T, Miyamoto, K, Kawano, K.
Deposit date:2001-10-02
Release date:2003-09-30
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of epiregulin and the effect of its C-terminal domain for receptor binding affinity
Febs Lett., 553, 2003
2Z0D
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BU of 2z0d by Molmil
The crystal structure of human Atg4B- LC3(1-120) complex
Descriptor: Cysteine protease ATG4B, Microtubule-associated proteins 1A/1B light chain 3B
Authors:Satoo, K, Noda, N.N, Inagaki, F.
Deposit date:2007-05-07
Release date:2007-05-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structure of Atg4B-LC3 complex reveals the mechanism of LC3 processing and delipidation during autophagy.
Embo J., 28, 2009
2Z0E
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BU of 2z0e by Molmil
The crystal structure of human Atg4B- LC3(1-124) complex
Descriptor: Cysteine protease ATG4B, Microtubule-associated proteins 1A/1B light chain 3B
Authors:Satoo, K, Noda, N.N, Inagaki, F.
Deposit date:2007-05-07
Release date:2007-05-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structure of Atg4B-LC3 complex reveals the mechanism of LC3 processing and delipidation during autophagy.
Embo J., 28, 2009
2ZZP
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BU of 2zzp by Molmil
The crystal structure of human Atg4B(C74S)- LC3(1-124) complex
Descriptor: Cysteine protease ATG4B, Microtubule-associated proteins 1A/1B light chain 3B
Authors:Satoo, K, Noda, N.N, Inagaki, F.
Deposit date:2009-02-22
Release date:2009-03-03
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The structure of Atg4B-LC3 complex reveals the mechanism of LC3 processing and delipidation during autophagy.
Embo J., 28, 2009
7E8D
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BU of 7e8d by Molmil
NSD2 E1099K mutant bound to nucleosome
Descriptor: DNA (185-MER), Histone H2A type 1, Histone H2B type 1-J, ...
Authors:Sengoku, T, Sato, K, Nishizawa, T, Nureki, O, Ogata, K.
Deposit date:2021-03-01
Release date:2021-11-10
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural basis of the regulation of the normal and oncogenic methylation of nucleosomal histone H3 Lys36 by NSD2.
Nat Commun, 12, 2021
5Y1A
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BU of 5y1a by Molmil
HBP35 of Porphyromonas gingivalis
Descriptor: 35 kDa hemin binding protein
Authors:Kakuda, S, Suzuki, M, Sato, K.
Deposit date:2017-07-20
Release date:2018-07-25
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Immunoglobulin-like domains of the cargo proteins are essential for protein stability during secretion by the type IX secretion system.
Mol. Microbiol., 110, 2018
2XV3
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BU of 2xv3 by Molmil
Pseudomonas aeruginosa Azurin with mutated metal-binding loop sequence (CAAAAHAAAAM), chemically reduced, pH5.3
Descriptor: AZURIN, COPPER (I) ION
Authors:Li, C, Sato, K, Monari, S, Salard, I, Sola, M, Banfield, M.J, Dennison, C.
Deposit date:2010-10-22
Release date:2010-12-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Metal-Binding Loop Length is a Determinant of the Pka of a Histidine Ligand at a Type 1 Copper Site
Inorg.Chem., 50, 2011
2A6W
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BU of 2a6w by Molmil
Crystal structure of Emp46p carbohydrate recognition domain (CRD), metal-free form
Descriptor: Emp46p
Authors:Satoh, T, Sato, K, Kanoh, A, Yamashita, K, Kato, R, Nakano, A, Wakatsuki, S.
Deposit date:2005-07-04
Release date:2006-01-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structures of the carbohydrate recognition domain of Ca2+-independent cargo receptors Emp46p and Emp47p.
J.Biol.Chem., 281, 2006
2A71
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BU of 2a71 by Molmil
Crystal structure of Emp47p carbohydrate recognition domain (CRD), orthorhombic crystal form
Descriptor: Emp47p
Authors:Satoh, T, Sato, K, Kanoh, A, Yamashita, K, Kato, R, Nakano, A, Wakatsuki, S.
Deposit date:2005-07-04
Release date:2006-01-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structures of the carbohydrate recognition domain of Ca2+-independent cargo receptors Emp46p and Emp47p.
J.Biol.Chem., 281, 2006
1QCM
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BU of 1qcm by Molmil
AMYLOID BETA PEPTIDE (25-35), NMR, 20 STRUCTURES
Descriptor: AMYLOID BETA PEPTIDE
Authors:Kohno, T, Kobayashi, K, Maeda, T, Sato, K, Takashima, A.
Deposit date:1996-07-19
Release date:1997-07-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Three-dimensional structures of the amyloid beta peptide (25-35) in membrane-mimicking environment.
Biochemistry, 35, 1996
2A6Y
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BU of 2a6y by Molmil
Crystal structure of Emp47p carbohydrate recognition domain (CRD), tetragonal crystal form
Descriptor: Emp47p (form1), SULFATE ION
Authors:Satoh, T, Sato, K, Kanoh, A, Yamashita, K, Kato, R, Nakano, A, Wakatsuki, S.
Deposit date:2005-07-04
Release date:2006-01-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Structures of the carbohydrate recognition domain of Ca2+-independent cargo receptors Emp46p and Emp47p.
J.Biol.Chem., 281, 2006
2A6V
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BU of 2a6v by Molmil
Crystal structure of Emp46p carbohydrate recognition domain (CRD), potassium-bound form
Descriptor: 1,2-ETHANEDIOL, Emp46p, POTASSIUM ION
Authors:Satoh, T, Sato, K, Kanoh, A, Yamashita, K, Kato, R, Nakano, A, Wakatsuki, S.
Deposit date:2005-07-04
Release date:2006-01-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Structures of the carbohydrate recognition domain of Ca2+-independent cargo receptors Emp46p and Emp47p.
J.Biol.Chem., 281, 2006
2A6Z
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BU of 2a6z by Molmil
Crystal structure of Emp47p carbohydrate recognition domain (CRD), monoclinic crystal form 1
Descriptor: Emp47p (form2)
Authors:Satoh, T, Sato, K, Kanoh, A, Yamashita, K, Kato, R, Nakano, A, Wakatsuki, S.
Deposit date:2005-07-04
Release date:2006-01-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structures of the carbohydrate recognition domain of Ca2+-independent cargo receptors Emp46p and Emp47p.
J.Biol.Chem., 281, 2006
2A6X
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BU of 2a6x by Molmil
Crystal structure of Emp46p carbohydrate recognition domain (CRD), Y131F mutant
Descriptor: 1,2-ETHANEDIOL, Emp46p, POTASSIUM ION
Authors:Satoh, T, Sato, K, Kanoh, A, Yamashita, K, Kato, R, Nakano, A, Wakatsuki, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-04
Release date:2006-01-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structures of the carbohydrate recognition domain of Ca2+-independent cargo receptors Emp46p and Emp47p.
J.Biol.Chem., 281, 2006
1HP9
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BU of 1hp9 by Molmil
kappa-Hefutoxins: a novel Class of Potassium Channel Toxins from Scorpion venom
Descriptor: kappa-hefutoxin 1
Authors:Srinivasan, K.N, Sivaraja, V, Huys, I, Sasaki, T, Cheng, B, Kumar, T.K.S, Sato, K, Tytgat, J, Yu, C, Brian Chia, C.S, Ranganathan, S, Bowie, J.H, Kini, R.M, Gopalakrishnakone, P.
Deposit date:2000-12-12
Release date:2002-08-28
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:kappa-Hefutoxin1, a novel toxin from the scorpion Heterometrus fulvipes with unique structure and function. Importance of the functional diad in potassium channel selectivity.
J.Biol.Chem., 277, 2002
1D6Q
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BU of 1d6q by Molmil
HUMAN LYSOZYME E102 MUTANT LABELLED WITH 2',3'-EPOXYPROPYL GLYCOSIDE OF N-ACETYLLACTOSAMINE
Descriptor: GLYCEROL, LYSOZYME, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Muraki, M, Harata, K, Sugita, N, Sato, K.
Deposit date:1999-10-15
Release date:2000-01-21
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Protein-carbohydrate interactions in human lysozyme probed by combining site-directed mutagenesis and affinity labeling.
Biochemistry, 39, 2000
1D6P
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BU of 1d6p by Molmil
HUMAN LYSOZYME L63 MUTANT LABELLED WITH 2',3'-EPOXYPROPYL N,N'-DIACETYLCHITOBIOSE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, LYSOZYME
Authors:Muraki, M, Harata, K, Sugita, N, Sato, K.
Deposit date:1999-10-15
Release date:2000-01-21
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Protein-carbohydrate interactions in human lysozyme probed by combining site-directed mutagenesis and affinity labeling.
Biochemistry, 39, 2000
4Z5T
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BU of 4z5t by Molmil
The nucleosome containing human H3.5
Descriptor: DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Urahama, T, Harada, A, Maehara, K, Horikoshi, N, Sato, K, Sato, Y, Shiraishi, K, Sugino, N, Osakabe, A, Tachiwana, H, Kagawa, W, Kimura, H, Ohkawa, Y, Kurumizaka, H.
Deposit date:2015-04-03
Release date:2016-02-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Histone H3.5 forms an unstable nucleosome and accumulates around transcription start sites in human testis.
Epigenetics Chromatin, 9, 2016
1OMG
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BU of 1omg by Molmil
NMR STUDY OF OMEGA-CONOTOXIN MVIIA
Descriptor: OMEGA-CONOTOXIN MVIIA
Authors:Kohno, T, Kim, J.-I, Kobayashi, K, Kodera, Y, Maeda, T, Sato, K.
Deposit date:1995-04-26
Release date:1996-04-03
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Three-dimensional structure in solution of the calcium channel blocker omega-conotoxin MVIIA.
Biochemistry, 34, 1995
2P5J
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BU of 2p5j by Molmil
sPLA2 inhibitor pip 17
Descriptor: pip17
Authors:Thwin, M.M, Satyanarayanajois, D.S, Nagarajarao, L.M, Sato, K, Gopalakrishnakone, P.P, Arjunan, P.
Deposit date:2007-03-15
Release date:2007-11-13
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Novel Peptide Inhibitors of Human Secretory Phospholipase A2 with Antiinflammatory Activity: Solution Structure and Molecular Modeling.
J.Med.Chem., 50, 2007
2P5H
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BU of 2p5h by Molmil
sPLA2 inhibitor 9
Descriptor: pip9
Authors:Thwin, M.M, Satyanarayanajois, D.S, Nagarajarao, L.M, Sato, K, Gopalakrishnakone, P.P, Arjunan, P.
Deposit date:2007-03-15
Release date:2007-11-13
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Novel Peptide Inhibitors of Human Secretory Phospholipase A2 with Antiinflammatory Activity: Solution Structure and Molecular Modeling.
J.Med.Chem., 50, 2007

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