Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1IVY
DownloadVisualize
BU of 1ivy by Molmil
PHYSIOLOGICAL DIMER HPP PRECURSOR
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Rudenko, G, Bonten, E, D'Azzo, A, Hol, W.G.J.
Deposit date:1996-06-12
Release date:1997-04-21
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Three-dimensional structure of the human 'protective protein': structure of the precursor form suggests a complex activation mechanism.
Structure, 3, 1995
1C4R
DownloadVisualize
BU of 1c4r by Molmil
THE STRUCTURE OF THE LIGAND-BINDING DOMAIN OF NEUREXIN 1BETA: REGULATION OF LNS DOMAIN FUNCTION BY ALTERNATIVE SPLICING
Descriptor: NEUREXIN-I BETA
Authors:Rudenko, G, Nguyen, T, Chelliah, Y, Sudhof, T.C, Deisenhofer, J.
Deposit date:1999-09-28
Release date:2000-10-04
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The structure of the ligand-binding domain of neurexin Ibeta: regulation of LNS domain function by alternative splicing.
Cell(Cambridge,Mass.), 99, 1999
1N7D
DownloadVisualize
BU of 1n7d by Molmil
Extracellular domain of the LDL receptor
Descriptor: 12-TUNGSTOPHOSPHATE, CALCIUM ION, Low-density lipoprotein receptor, ...
Authors:Rudenko, G, Henry, L, Henderson, K, Ichtchenko, K, Brown, M.S, Goldstein, J.L, Deisenhofer, J.
Deposit date:2002-11-13
Release date:2003-01-21
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Structure of the LDL receptor extracellular domain at endosomal pH
Science, 298, 2002
2R16
DownloadVisualize
BU of 2r16 by Molmil
Crystal Structure of bovine neurexin 1 alpha LNS/LG domain 4 (with no splice insert)
Descriptor: CALCIUM ION, Neurexin-1-alpha
Authors:Rudenko, G.
Deposit date:2007-08-22
Release date:2008-03-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Regulation of Neurexin 1beta Tertiary Structure and Ligand Binding through Alternative Splicing
Structure, 16, 2008
2R1D
DownloadVisualize
BU of 2r1d by Molmil
Crystal structure of rat neurexin 1beta in the Ca2+ containing form
Descriptor: CALCIUM ION, Neurexin-1-beta
Authors:Rudenko, G.
Deposit date:2007-08-22
Release date:2008-04-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Regulation of Neurexin 1beta Tertiary Structure and Ligand Binding through Alternative Splicing
Structure, 16, 2008
2R1B
DownloadVisualize
BU of 2r1b by Molmil
Crystal Structure of rat neurexin 1beta with a splice insert at SS#4
Descriptor: CALCIUM ION, Neurexin-1-beta
Authors:Rudenko, G.
Deposit date:2007-08-22
Release date:2008-03-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Regulation of Neurexin 1beta Tertiary Structure and Ligand Binding through Alternative Splicing
Structure, 16, 2008
3QCW
DownloadVisualize
BU of 3qcw by Molmil
Structure of neurexin 1 alpha (domains LNS1-LNS6), no splice inserts
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Neurexin-1-alpha
Authors:Rudenko, G.
Deposit date:2011-01-17
Release date:2011-06-15
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:The Structure of Neurexin 1 alpha Reveals Features Promoting a Role as Synaptic Organizer
Structure, 19, 2011
6CW1
DownloadVisualize
BU of 6cw1 by Molmil
Crystal structure of Neurexin-1 alpha ectodomain fragment, L2-L3
Descriptor: Neurexin-1
Authors:Misra, A, Rudenko, G.
Deposit date:2018-03-29
Release date:2018-09-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Structural Plasticity of Neurexin 1 alpha : Implications for its Role as Synaptic Organizer.
J. Mol. Biol., 430, 2018
7UCC
DownloadVisualize
BU of 7ucc by Molmil
Transcription factor FosB/JunD bZIP domain in the reduced form
Descriptor: CHLORIDE ION, ETHANOL, Protein fosB, ...
Authors:Kumar, A, Machius, M.C, Rudenko, G.
Deposit date:2022-03-16
Release date:2023-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Chemically targeting the redox switch in AP1 transcription factor Delta FOSB.
Nucleic Acids Res., 50, 2022
7UCD
DownloadVisualize
BU of 7ucd by Molmil
Transcription factor FosB/JunD bZIP domain covalently modified with the cysteine-targeting alpha-haloketone compound Z2159931480
Descriptor: 7-acetyl-4-methoxy-1-benzofuran-3(2H)-one, CHLORIDE ION, Protein fosB, ...
Authors:Kumar, A, Machius, M.C, Rudenko, G.
Deposit date:2022-03-16
Release date:2023-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:Chemically targeting the redox switch in AP1 transcription factor Delta FOSB.
Nucleic Acids Res., 50, 2022
2H0B
DownloadVisualize
BU of 2h0b by Molmil
Crystal Structure of the second LNS/LG domain from Neurexin 1 alpha
Descriptor: CALCIUM ION, GLYCEROL, Neurexin-1-alpha
Authors:Sheckler, L.R, Henry, L, Sugita, S, Sudhof, T.C, Rudenko, G.
Deposit date:2006-05-14
Release date:2006-06-20
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of the Second LNS/LG Domain from Neurexin 1{alpha}: Ca2+ binding and the effects of alternative splicing
J.Biol.Chem., 281, 2006
7KBU
DownloadVisualize
BU of 7kbu by Molmil
Structure of Hevin FS-EC
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ...
Authors:Machius, M, Fan, S, Rudenko, G.
Deposit date:2020-10-03
Release date:2021-02-10
Last modified:2021-07-14
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Interplay between hevin, SPARC, and MDGAs: Modulators of neurexin-neuroligin transsynaptic bridges.
Structure, 29, 2021
6UCM
DownloadVisualize
BU of 6ucm by Molmil
Transcription factor DeltaFosB bZIP domain self-assembly, type-II crystal
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Protein fosB
Authors:Yin, Z, Machius, M, Rudenko, G.
Deposit date:2019-09-16
Release date:2020-01-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.424 Å)
Cite:Self-assembly of the bZIP transcription factor Delta FosB.
Curr Res Struct Biol, 2, 2020
6UCL
DownloadVisualize
BU of 6ucl by Molmil
Transcription factor deltaFosB bZIP domain self-assembly, type-I crystal
Descriptor: CHLORIDE ION, Protein fosB
Authors:Yin, Z, Machius, M, Rudenko, G.
Deposit date:2019-09-16
Release date:2020-01-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.207 Å)
Cite:Self-assembly of the bZIP transcription factor Delta FosB.
Curr Res Struct Biol, 2, 2020
6UCI
DownloadVisualize
BU of 6uci by Molmil
Transcription factor DeltaFosB bZIP domain self-assembly, oxidized form
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Protein fosB
Authors:Yin, Z, Machius, M, Rudenko, G.
Deposit date:2019-09-16
Release date:2020-01-15
Last modified:2020-07-01
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Self-assembly of the bZIP transcription factor Delta FosB.
Curr Res Struct Biol, 2, 2020
3R05
DownloadVisualize
BU of 3r05 by Molmil
Structure of neurexin 1 alpha (domains LNS1-LNS6), with splice insert SS3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Neurexin-1-alpha
Authors:Venugopal, V, Rudenko, G.
Deposit date:2011-03-07
Release date:2011-06-15
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:The structure of neurexin 1α reveals features promoting a role as synaptic organizer
Structure, 19, 2011
6U6T
DownloadVisualize
BU of 6u6t by Molmil
Neuronal growth regulator 1 (NEGR1)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Neuronal growth regulator 1, ...
Authors:Machius, M, Venkannagari, H, Misra, A, Rudenko, G.
Deposit date:2019-08-30
Release date:2020-08-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Highly Conserved Molecular Features in IgLONs Contrast Their Distinct Structural and Biological Outcomes.
J.Mol.Biol., 432, 2020
6U7N
DownloadVisualize
BU of 6u7n by Molmil
Crystal structure of neurotrimin (NTM)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Neurotrimin, ...
Authors:Machius, M, Venkannagari, H, Misra, A, Rudenko, G, Rush, S.
Deposit date:2019-09-03
Release date:2020-08-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.321 Å)
Cite:Highly Conserved Molecular Features in IgLONs Contrast Their Distinct Structural and Biological Outcomes.
J.Mol.Biol., 432, 2020
5VPB
DownloadVisualize
BU of 5vpb by Molmil
Transcription factor FosB/JunD bZIP domain in its oxidized form, type-I crystal
Descriptor: CHLORIDE ION, Protein fosB, Transcription factor jun-D
Authors:Yin, Z, Machius, M, Rudenko, G.
Deposit date:2017-05-04
Release date:2017-09-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.691 Å)
Cite:Activator Protein-1: redox switch controlling structure and DNA-binding.
Nucleic Acids Res., 45, 2017
5VPA
DownloadVisualize
BU of 5vpa by Molmil
Transcription factor FosB/JunD bZIP domain
Descriptor: CHLORIDE ION, Protein fosB, SODIUM ION, ...
Authors:Yin, Z, Machius, M, Rudenko, G.
Deposit date:2017-05-04
Release date:2017-09-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Activator Protein-1: redox switch controlling structure and DNA-binding.
Nucleic Acids Res., 45, 2017
5VPF
DownloadVisualize
BU of 5vpf by Molmil
Transcription factor FosB/JunD bZIP domain in complex with cognate DNA, type-II crystal
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DNA (5'-D(*CP*GP*TP*CP*GP*GP*TP*GP*AP*CP*TP*CP*AP*CP*CP*GP*AP*CP*G)-3'), ...
Authors:Yin, Z, Rudenko, G, Machius, M.
Deposit date:2017-05-04
Release date:2017-09-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.694 Å)
Cite:Activator Protein-1: redox switch controlling structure and DNA-binding.
Nucleic Acids Res., 45, 2017
5V5V
DownloadVisualize
BU of 5v5v by Molmil
Complex of NLGN2 with MDGA1 Ig1-Ig2
Descriptor: MAM domain-containing glycosylphosphatidylinositol anchor protein 1, Neuroligin-2
Authors:Gangwar, S.P, Machius, M, Rudenko, G.
Deposit date:2017-03-15
Release date:2017-07-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (4.11 Å)
Cite:Molecular Mechanism of MDGA1: Regulation of Neuroligin 2:Neurexin Trans-synaptic Bridges.
Neuron, 94, 2017
5VPC
DownloadVisualize
BU of 5vpc by Molmil
Transcription factor FosB/JunD bZIP domain in its oxidized form, type-II crystal
Descriptor: CHLORIDE ION, Protein fosB, SODIUM ION, ...
Authors:Yin, Z, Machius, M.C, Rudenko, G.
Deposit date:2017-05-04
Release date:2017-09-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.498 Å)
Cite:Activator Protein-1: redox switch controlling structure and DNA-binding.
Nucleic Acids Res., 45, 2017
5VPD
DownloadVisualize
BU of 5vpd by Molmil
Transcription factor FosB/JunD bZIP domain in its oxidized form, type-III crystal
Descriptor: CHLORIDE ION, Protein fosB, SODIUM ION, ...
Authors:Yin, Z, Machius, M, Rudenko, G.
Deposit date:2017-05-04
Release date:2017-09-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Activator Protein-1: redox switch controlling structure and DNA-binding.
Nucleic Acids Res., 45, 2017
5V5W
DownloadVisualize
BU of 5v5w by Molmil
Molecular Mechanism of MDGA1: Regulation of Neuroligin 2:Neurexin Trans-synaptic Bridges
Descriptor: MAM domain-containing glycosylphosphatidylinositol anchor protein 1, SULFATE ION
Authors:Machius, M, Gangwar, S.P, Rudenko, G.
Deposit date:2017-03-15
Release date:2017-07-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.718 Å)
Cite:Molecular Mechanism of MDGA1: Regulation of Neuroligin 2:Neurexin Trans-synaptic Bridges.
Neuron, 94, 2017

 

12>

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon