1X1M
| Solution Structure of the N-terminal Ubiquitin-like Domain in Mouse Ubiquitin-like Protein SB132 | Descriptor: | Ubiquitin-like protein SB132 | Authors: | Zhao, C, Tomizawa, T, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2005-04-07 | Release date: | 2005-10-07 | Last modified: | 2022-03-02 | Method: | SOLUTION NMR | Cite: | Solution Structure of the N-terminal Ubiquitin-like Domain in Mouse Ubiquitin-like Protein SB132 To be Published
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1WR1
| The complex structure of Dsk2p UBA with ubiquitin | Descriptor: | Ubiquitin, Ubiquitin-like protein DSK2 | Authors: | Ohno, A, Jee, J.G, Fujiwara, K, Tenno, T, Goda, N, Tochio, H, Hiroaki, H, kobayashi, H, Shirakawa, M. | Deposit date: | 2004-10-08 | Release date: | 2005-04-19 | Last modified: | 2023-09-27 | Method: | SOLUTION NMR | Cite: | Structure of the UBA domain of Dsk2p in complex with ubiquitin molecular determinants for ubiquitin recognition. Structure, 13, 2005
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1WX8
| Solution Structure of the N-terminal Ubiquitin-like Domain in the 4931431F19Rik Protein | Descriptor: | RIKEN cDNA 4931431F19 | Authors: | Zhao, C, Tomizawa, T, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2005-01-20 | Release date: | 2005-07-20 | Last modified: | 2022-03-02 | Method: | SOLUTION NMR | Cite: | Solution Structure of the N-terminal Ubiquitin-like Domain in the 4931431F19Rik Protein To be Published
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4K7S
| Crystal structure of Zn2-hUb (human ubiquitin) adduct from a solution 35 mM zinc acetate/1.3 mM hUb | Descriptor: | 1,2-ETHANEDIOL, ACETATE ION, ZINC ION, ... | Authors: | Fermani, S, Falini, G, Calvaresi, M, Bottoni, A, Arnesano, F, Natile, G. | Deposit date: | 2013-04-17 | Release date: | 2013-05-08 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (1.76 Å) | Cite: | Conformational selection of ubiquitin quaternary structures driven by zinc ions. Chemistry, 19, 2013
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1WE7
| Solution structure of Ubiquitin-like domain in SF3a120 | Descriptor: | Sf3a1 protein | Authors: | He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-05-24 | Release date: | 2004-11-24 | Last modified: | 2022-03-02 | Method: | SOLUTION NMR | Cite: | Solution structure of Ubiquitin-like domain in SF3a120 To be Published
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1WH3
| Solution structure of C-terminal ubiquitin like domain of human 2'-5'-oligoadenylate synthetase-like protain (p59 OASL) | Descriptor: | 59 kDa 2'-5'-oligoadenylate synthetase like protein | Authors: | Tochio, N, Tomizawa, T, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2004-05-28 | Release date: | 2004-11-28 | Last modified: | 2022-03-02 | Method: | SOLUTION NMR | Cite: | Solution structure of C-terminal ubiquitin like domain of human 2'-5'-oligoadenylate synthetase-like protain (p59 OASL) To be Published
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1WX7
| Solution Structure of the N-terminal Ubiquitin-like Domain in the Human Ubiquilin 3 (UBQLN3) | Descriptor: | Ubiquilin 3 | Authors: | Zhao, C, Saito, K, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2005-01-20 | Release date: | 2005-07-20 | Last modified: | 2022-03-02 | Method: | SOLUTION NMR | Cite: | Solution Structure of the N-terminal Ubiquitin-like Domain in the Human Ubiquilin 3 (UBQLN3) To be Published
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1WY8
| Solution Structure of the N-terminal Ubiquitin-like Domain in Human Np95/ICBP90-like Ring Finger Protein (NIRF) | Descriptor: | Np95-like ring finger protein, isoform a | Authors: | Zhao, C, Saito, K, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2005-02-09 | Release date: | 2005-08-09 | Last modified: | 2022-03-02 | Method: | SOLUTION NMR | Cite: | Solution Structure of the N-terminal Ubiquitin-like Domain
in Human Np95/ICBP90-like Ring Finger Protein (NIRF) To be Published
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3A9J
| Crystal structure of the mouse TAB2-NZF in complex with Lys63-linked di-ubiquitin | Descriptor: | Mitogen-activated protein kinase kinase kinase 7-interacting protein 2, Ubiquitin, ZINC ION | Authors: | Sato, Y, Yoshikawa, A, Yamashita, M, Yamagata, A, Fukai, S. | Deposit date: | 2009-10-29 | Release date: | 2009-12-08 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (1.18 Å) | Cite: | Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by NZF domains of TAB2 and TAB3 Embo J., 28, 2009
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2XEW
| Crystal structure of K11-linked diubiquitin | Descriptor: | 1,2-ETHANEDIOL, CHLORIDE ION, CITRATE ANION, ... | Authors: | Bremm, A, Freund, S.M.V, Komander, D. | Deposit date: | 2010-05-18 | Release date: | 2010-07-14 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Lys11-Linked Ubiquitin Chains Adopt Compact Conformations and are Preferentially Hydrolyzed by the Deubiquitinase Cezanne Nat.Struct.Mol.Biol., 17, 2010
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3ONS
| Crystal structure of Human Ubiquitin in a new crystal form | Descriptor: | Ubiquitin | Authors: | Amodeo, G.A, Huang, K.Y, Mcdermott, A.E, Tong, L. | Deposit date: | 2010-08-30 | Release date: | 2011-02-23 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | The structure of human ubiquitin in 2-methyl-2,4-pentanediol: a new conformational switch. Protein Sci., 20, 2011
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1XQQ
| Simultaneous determination of protein structure and dynamics | Descriptor: | ubiquitin | Authors: | Lindorff-Larsen, K, Best, R.B, DePristo, M.A, Vendruscolo, M, Dobson, C.M. | Deposit date: | 2004-10-13 | Release date: | 2005-02-08 | Last modified: | 2022-03-02 | Method: | SOLUTION NMR | Cite: | Simultaneous determination of protein structure and dynamics Nature, 433, 2005
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2WX0
| TAB2 NZF DOMAIN IN COMPLEX WITH Lys63-linked di-ubiquitin, P21 | Descriptor: | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-INTERACTING PROTEIN 2, UBIQUITIN, ZINC ION | Authors: | Kulathu, Y, Akutsu, M, Bremm, A, Hofmann, K, Komander, D. | Deposit date: | 2009-10-30 | Release date: | 2009-11-24 | Last modified: | 2024-05-08 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Two-Sided Ubiquitin Binding Explains Specificity of the Tab2 Nzf Domain Nat.Struct.Mol.Biol., 16, 2009
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2XK5
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2ZCB
| Crystal Structure of ubiquitin P37A/P38A | Descriptor: | Ubiquitin, ZINC ION | Authors: | Kitahara, R, Tanaka, T, Sakata, E, Yamaguchi, Y, Kato, K, Yokoyama, S. | Deposit date: | 2007-11-08 | Release date: | 2007-11-20 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal Structure of ubiquitin P37A/P38A To be published
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3RUL
| New strategy to analyze structures of glycopeptide-target complexes | Descriptor: | 10-METHYLUNDECANOIC ACID, 2-amino-2-deoxy-beta-D-glucopyranuronic acid, CHLORIDE ION, ... | Authors: | Economou, N.J, Nahoum, V, Weeks, S.D, Grasty, K.C, Loll, P.J. | Deposit date: | 2011-05-05 | Release date: | 2012-06-06 | Last modified: | 2023-12-06 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | A carrier protein strategy yields the structure of dalbavancin. J.Am.Chem.Soc., 134, 2012
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1YIW
| X-ray Crystal Structure of a Chemically Synthesized Ubiquitin | Descriptor: | CADMIUM ION, CHLORIDE ION, Ubiquitin | Authors: | Bang, D, Makhatadze, G.I, Tereshko, V, Kossiakoff, A.A, Kent, S.B. | Deposit date: | 2005-01-13 | Release date: | 2005-06-14 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (1.39 Å) | Cite: | X-ray Crystal Structure of a Chemically Synthesized [D-Gln35]Ubiquitin Angew.Chem.Int.Ed.Engl., 44, 2005
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1YQB
| Human Ubiquilin 3 | Descriptor: | Ubiquilin 3 | Authors: | Walker, J.R, Xue, S, Avvakumov, G.V, Newman, E.M, Mackenzie, F, Sundstrom, M, Arrowsmith, C, Edwards, A, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC) | Deposit date: | 2005-02-01 | Release date: | 2005-02-08 | Last modified: | 2023-08-23 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | The Ubiquitin-like domain of Human Ubiquilin 3 To be Published
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3ALB
| Cyclic Lys48-linked tetraubiquitin | Descriptor: | SULFATE ION, ubiquitin | Authors: | Satoh, T, Sakata, E, Yamamoto, S, Yamaguchi, Y, Sumiyoshi, A, Wakatsuki, S, Kato, K. | Deposit date: | 2010-07-29 | Release date: | 2010-08-25 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Crystal structure of cyclic Lys48-linked tetraubiquitin Biochem.Biophys.Res.Commun., 2010
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3QHT
| Crystal Structure of the Monobody ySMB-1 bound to yeast SUMO | Descriptor: | GLYCEROL, Monobody ySMB-1, Ubiquitin-like protein SMT3 | Authors: | Koide, S, Gilbreth, R.N. | Deposit date: | 2011-01-26 | Release date: | 2011-05-11 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Isoform-specific monobody inhibitors of small ubiquitin-related modifiers engineered using structure-guided library design. Proc.Natl.Acad.Sci.USA, 108, 2011
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1Z2M
| Crystal Structure of ISG15, the Interferon-Induced Ubiquitin Cross Reactive Protein | Descriptor: | OSMIUM 4+ ION, interferon, alpha-inducible protein (clone IFI-15K) | Authors: | Narasimhan, J, Wang, M, Fu, Z, Klein, J.M, Haas, A.L, Kim, J.J. | Deposit date: | 2005-03-08 | Release date: | 2005-05-24 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Crystal Structure of the Interferon-induced Ubiquitin-like Protein ISG15. J.Biol.Chem., 280, 2005
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3AUL
| Crystal structure of wild-type Lys48-linked diubiquitin in an open conformation | Descriptor: | Polyubiquitin-C | Authors: | Hirano, T, Olivier, S, Yagi, M, Takemoto, E, Hiromoto, T, Satoh, T, Mizushima, T, Kato, K. | Deposit date: | 2011-02-09 | Release date: | 2011-09-07 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.39 Å) | Cite: | Conformational dynamics of wild-type Lys48-linked diubiquitin in solution J.Biol.Chem., 286, 2011
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1ZKH
| Solution structure of a human ubiquitin-like domain in SF3A1 | Descriptor: | Splicing factor 3 subunit 1 | Authors: | Lukin, J.A, Dhe-Paganon, S, Guido, V, Lemak, A, Avvakumov, G.V, Xue, S, Newman, E.M, Mackenzie, F, Sundstrom, M, Edwards, A, Arrowsmith, C.H, Structural Genomics Consortium (SGC) | Deposit date: | 2005-05-02 | Release date: | 2005-05-10 | Last modified: | 2022-03-02 | Method: | SOLUTION NMR | Cite: | Solution structure of a human ubiquitin-like domain in SF3A1 To be Published
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3A9K
| Crystal structure of the mouse TAB3-NZF in complex with Lys63-linked di-ubiquitin | Descriptor: | Mitogen-activated protein kinase kinase kinase 7-interacting protein 3, Ubiquitin, ZINC ION | Authors: | Sato, Y, Yoshikawa, A, Yamashita, M, Yamagata, A, Fukai, S. | Deposit date: | 2009-10-29 | Release date: | 2009-12-08 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Structural basis for specific recognition of Lys 63-linked polyubiquitin chains by NZF domains of TAB2 and TAB3 Embo J., 28, 2009
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4K7W
| Crystal structure of Zn3-hUb(human ubiquitin) adduct from a solution 100 mM zinc acetate/1.3 mM hUb | Descriptor: | 1,2-ETHANEDIOL, ACETATE ION, ZINC ION, ... | Authors: | Fermani, S, Falini, G, Calvaresi, M, Bottoni, A, Arnesano, F, Natile, G. | Deposit date: | 2013-04-17 | Release date: | 2013-05-08 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (1.76 Å) | Cite: | Conformational selection of ubiquitin quaternary structures driven by zinc ions. Chemistry, 19, 2013
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