PDB: 909 resultsInfo pagesStatus searchChemie searchBIRD

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3UCU	The c-di-GMP-I riboswitch bound to pGpG Descriptor: MAGNESIUM ION, RNA (92-MER), U1 small nuclear ribonucleoprotein A, ... Authors: Smith, K.D, Strobel, S.A. Deposit date: 2011-10-27 Release date: 2012-01-04 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural and biochemical characterization of linear dinucleotide analogues bound to the c-di-GMP-I aptamer. Biochemistry, 51, 2012
3UWT	Crystal structure of a RNA binding domain of poly-U binding splicing factor 60KDa (PUF60) from Homo sapiens at 2.50 A resolution Descriptor: CHLORIDE ION, Poly(U)-binding-splicing factor PUF60 Authors: Joint Center for Structural Genomics (JCSG), Partnership for T-Cell Biology (TCELL) Deposit date: 2011-12-02 Release date: 2012-01-11 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structure of a RNA binding domain of poly-U binding splicing factor 60KDa (PUF60) from Homo sapiens at 2.50 A resolution To be published
1O0P	Solution Structure of the third RNA Recognition Motif (RRM) of U2AF65 in complex with an N-terminal SF1 peptide Descriptor: Splicing Factor SF1, Splicing factor U2AF 65 kDa subunit Authors: Selenko, P, Gregorovic, G, Sprangers, R, Stier, G, Rhani, Z, Kramer, A, Sattler, M. Deposit date: 2003-02-24 Release date: 2003-05-06 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural Basis for the molecular recognition between human splicing factors U2AF65 and SF1/mBBP Mol.Cell, 11, 2003
1FJE	SOLUTION STRUCTURE OF NUCLEOLIN RBD12 IN COMPLEX WITH SNRE RNA Descriptor: NUCLEOLIN RBD12, SNRE RNA Authors: Allain, F.H.T, Bouvet, P, Dieckmann, T, Feigon, J. Deposit date: 2000-08-08 Release date: 2001-01-03 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Molecular basis of sequence-specific recognition of pre-ribosomal RNA by nucleolin. EMBO J., 19, 2000
1FJ7	SOLUTION STRUCTURE OF NUCLEOLIN RBD1 Descriptor: NUCLEOLIN RBD1 Authors: Allain, F.H.-T, Gilbert, D.E, Bouvet, P, Feigon, J. Deposit date: 2000-08-07 Release date: 2000-10-16 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of the two N-terminal RNA-binding domains of nucleolin and NMR study of the interaction with its RNA target. J.Mol.Biol., 303, 2000
1FJC	SOLUTION STRUCTURE OF NUCLEOLIN RBD2 Descriptor: NUCLEOLIN RBD2 Authors: Allain, F.H.-T, Gilbert, D.E, Bouvet, P, Feigon, J. Deposit date: 2000-08-07 Release date: 2000-10-16 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of the two N-terminal RNA-binding domains of nucleolin and NMR study of the interaction with its RNA target. J.Mol.Biol., 303, 2000
3VAL	Structure of U2AF65 variant with BrU5C1 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA (5'-D(*C*UP*UP*UP*(BRU)P*UP*U)-3'), SULFATE ION, ... Authors: Jenkins, J.L, Frato, K.H, Kielkopf, C.L. Deposit date: 2011-12-29 Release date: 2013-02-13 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res., 41, 2013
3EGZ	Crystal structure of an in vitro evolved tetracycline aptamer and artificial riboswitch Descriptor: 7-CHLOROTETRACYCLINE, MAGNESIUM ION, Tetracycline aptamer and artificial riboswitch, ... Authors: Xiao, H, Edwards, T.E, Ferre-D'Amare, A.R. Deposit date: 2008-09-11 Release date: 2008-10-28 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural basis for specific, high-affinity tetracycline binding by an in vitro evolved aptamer and artificial riboswitch Chem.Biol., 15, 2008
1FHT	RNA-BINDING DOMAIN OF THE U1A SPLICEOSOMAL PROTEIN U1A117, NMR, 43 STRUCTURES Descriptor: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A Authors: Allain, F.H.-T, Gubser, C.C, Howe, P.W.A, Nagai, K, Neuhaus, D, Varani, G. Deposit date: 1996-02-21 Release date: 1996-07-11 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of the N-terminal RNP domain of U1A protein: the role of C-terminal residues in structure stability and RNA binding. J.Mol.Biol., 257, 1996
3VAK	Structure of U2AF65 variant with BrU5 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA (5'-D(*UP*UP*UP*UP*(BRU)P*UP*U)-3'), GLYCEROL, ... Authors: Jenkins, J.L, Kielkopf, C.L. Deposit date: 2011-12-29 Release date: 2013-02-13 Last modified: 2017-08-16 Method: X-RAY DIFFRACTION (2.17 Å) Cite: U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res., 41, 2013
1G2E	CRYSTAL STRUCTURE OF HUD AND AU-RICH ELEMENT OF THE TUMOR NECROSIS FACTOR ALPHA RNA Descriptor: 5'-R(P*UP*AP*UP*UP*UP*AP*UP*UP*UP*A)-3', PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD Authors: Wang, X, Hall, T.M.T. Deposit date: 2000-10-18 Release date: 2001-02-05 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural basis for recognition of AU-rich element RNA by the HuD protein. Nat.Struct.Biol., 8, 2001
1PGZ	Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) Descriptor: 5'-D(*T*TP*AP*GP*GP*GP*TP*TP*AP*GP*(6MI)P*G)-3', Heterogeneous nuclear ribonucleoprotein A1 Authors: Myers, J.C, Moore, S.A, Shamoo, Y. Deposit date: 2003-05-28 Release date: 2003-11-11 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure-based incorporation of 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine into the human telomeric repeat DNA as a probe for UP1 binding and destabilization of G-tetrad structures J.Biol.Chem., 278, 2003
3VAF	Structure of U2AF65 variant with BrU3 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA 5'-D(*UP*UP*(BRU)P*(BRU)P*UP*UP*U)-3', GLYCEROL, ... Authors: Jenkins, J.L, Kielkopf, C.L. Deposit date: 2011-12-29 Release date: 2013-02-13 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.49 Å) Cite: U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res., 41, 2013
3VAM	Structure of U2AF65 variant with BrU5C2 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA (5'-D(*UP*CP*UP*UP*(BRU)P*UP*U)-3'), GLYCEROL, ... Authors: Jenkins, J.L, Kielkopf, C.L. Deposit date: 2011-12-29 Release date: 2013-02-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.4 Å) Cite: U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res., 41, 2013
6M75	C-Myc DNA binding protein complex Descriptor: DNA (5'-D(*TP*CP*TP*TP*AP*TP*T)-3'), RNA-binding motif, single-stranded-interacting protein 1, ... Authors: Aggarwal, P, Bhavesh, N.S. Deposit date: 2020-03-17 Release date: 2021-03-17 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.57 Å) Cite: Hinge like domain motion facilitates human RBMS1 protein binding to proto-oncogene c-myc promoter. Nucleic Acids Res., 49, 2021
3VAJ	Structure of U2AF65 variant with BrU5C6 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA (5'-D(*UP*UP*UP*UP*(BRU)P*CP*U)-3'), GLYCEROL, ... Authors: Jenkins, J.L, Kielkopf, C.L. Deposit date: 2011-12-29 Release date: 2013-02-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.9 Å) Cite: U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res., 41, 2013
3EGN	C-terminal RNA Recognition Motif of the U11/U12 65K Protein Descriptor: RNA-binding protein 40 Authors: Netter, C, Wahl, M.C. Deposit date: 2008-09-11 Release date: 2009-06-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Functional stabilization of an RNA recognition motif by a noncanonical N-terminal expansion Rna, 15, 2009
3VAI	Structure of U2AF65 variant with BrU3C5 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA 5'-D(*UP*UP*(BRU)P*UP*CP*UP*U)-3', GLYCEROL, ... Authors: Jenkins, J.L, Frato, K.H, Kielkopf, C.L. Deposit date: 2011-12-29 Release date: 2013-02-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.2 Å) Cite: U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res., 41, 2013
1FXL	CRYSTAL STRUCTURE OF HUD AND AU-RICH ELEMENT OF THE C-FOS RNA Descriptor: 5'-R(P*UP*UP*UP*UP*AP*UP*UP*UP*U)-3', PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD Authors: Wang, X, Hall, T.M.T. Deposit date: 2000-09-26 Release date: 2001-02-05 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural basis for recognition of AU-rich element RNA by the HuD protein. Nat.Struct.Biol., 8, 2001
6N3D	Structure of HIV Tat-specific factor 1 U2AF Homology Motif (APO-State) Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: Loerch, S, Jenkins, J.L, Kielkopf, C.L. Deposit date: 2018-11-15 Release date: 2019-01-02 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.13 Å) Cite: The pre-mRNA splicing and transcription factor Tat-SF1 is a functional partner of the spliceosome SF3b1 subunit via a U2AF homology motif interface. J. Biol. Chem., 294, 2019
6NSX	Yeast Hsh155 Ligand bound to Human Tat-SF1 Motif Descriptor: CHLORIDE ION, HIV Tat-specific factor 1, Hsh155 Authors: Jenkins, J.L, Leach, J.R, Kielkopf, C.L. Deposit date: 2019-01-25 Release date: 2019-06-05 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2 Å) Cite: Cus2 enforces the first ATP-dependent step of splicing by binding to yeast SF3b1 through a UHM-ULM interaction. Rna, 25, 2019
1HD0	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0 (HNRNP D0 RBD1), NMR Descriptor: PROTEIN (HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN D0) Authors: Nagata, T, Kurihara, Y, Matsuda, G, Saeki, J, Kohno, T, Yanagida, Y, Ishikawa, F, Uesugi, S, Katahira, M. Deposit date: 1999-05-18 Release date: 2000-05-18 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Structure and interactions with RNA of the N-terminal UUAG-specific RNA-binding domain of hnRNP D0. J.Mol.Biol., 287, 1999
6NTY	2.1 A resolution structure of the Musashi-2 (Msi2) RNA recognition motif 1 (RRM1) domain Descriptor: PHOSPHATE ION, RNA-binding protein Musashi homolog 2 Authors: Lovell, S, Kashipathy, M.M, Battaile, K.P, Lan, L, Xiaoqing, W, Cooper, A, Gao, F.P, Xu, L. Deposit date: 2019-01-30 Release date: 2019-10-23 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal and solution structures of human oncoprotein Musashi-2 N-terminal RNA recognition motif 1. Proteins, 88, 2020
1OPI	SOLUTION STRUCTURE OF THE THIRD RNA RECOGNITION MOTIF (RRM) OF U2AF65 IN COMPLEX WITH AN N-TERMINAL SF1 PEPTIDE Descriptor: SPLICING FACTOR SF1, SPLICING FACTOR U2AF 65 KDA SUBUNIT Authors: Selenko, P, Gregorovic, G, Sprangers, R, Stier, G, Rhani, Z, Kramer, A, Sattler, M. Deposit date: 2003-03-05 Release date: 2004-03-16 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural basis for the molecular recognition between human splicing factors U2AF65 and SF1/mBBP Mol.Cell, 11, 2003
6NWW	Crystal structure of the RRM domain of S. pombe Puf1 in the P212121 space group Descriptor: CHLORIDE ION, Pumilio domain-containing protein C56F2.08c Authors: Qiu, C, Hall, T.M.T. Deposit date: 2019-02-07 Release date: 2019-07-03 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.06 Å) Cite: Distinct RNA-binding modules in a single PUF protein cooperate to determine RNA specificity. Nucleic Acids Res., 47, 2019

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