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PDB: 62 results

3FL2
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BU of 3fl2 by Molmil
Crystal structure of the ring domain of the E3 ubiquitin-protein ligase UHRF1
Descriptor: E3 ubiquitin-protein ligase UHRF1, ZINC ION
Authors:Walker, J.R, Avvakumov, G.V, Xue, S, Li, Y, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2008-12-18
Release date:2009-01-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure of the Ring Domain of the E3 Ubiquitin-Protein Ligase Uhrf1
To be Published
2GFO
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BU of 2gfo by Molmil
Structure of the Catalytic Domain of Human Ubiquitin Carboxyl-terminal Hydrolase 8
Descriptor: Ubiquitin carboxyl-terminal hydrolase 8, ZINC ION
Authors:Walker, J.R, Avvakumov, G.V, Xue, S, Newman, E.M, Finerty Jr, P.J, Butler-Cole, C, Weigelt, J, Sundstrom, M, Arrowsmith, C, Edwards, A, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2006-03-22
Release date:2006-04-04
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Amino-terminal Dimerization, NRDP1-Rhodanese Interaction, and Inhibited Catalytic Domain Conformation of the Ubiquitin-specific Protease 8 (USP8).
J.Biol.Chem., 281, 2006
2GWF
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BU of 2gwf by Molmil
Structure of a USP8-NRDP1 complex
Descriptor: RING finger protein 41, Ubiquitin carboxyl-terminal hydrolase 8
Authors:Walker, J.R, Avvakumov, G.V, Xue, S, Newman, E.M, Butler-Cole, C, Finerty Jr, P.J, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2006-05-04
Release date:2006-06-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Amino-terminal Dimerization, NRDP1-Rhodanese Interaction, and Inhibited Catalytic Domain Conformation of the Ubiquitin-specific Protease 8 (USP8).
J.Biol.Chem., 281, 2006
1YQB
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BU of 1yqb by Molmil
Human Ubiquilin 3
Descriptor: Ubiquilin 3
Authors:Walker, J.R, Xue, S, Avvakumov, G.V, Newman, E.M, Mackenzie, F, Sundstrom, M, Arrowsmith, C, Edwards, A, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2005-02-01
Release date:2005-02-08
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Ubiquitin-like domain of Human Ubiquilin 3
To be Published
1Z6U
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BU of 1z6u by Molmil
Np95-like ring finger protein isoform b [Homo sapiens]
Descriptor: Np95-like ring finger protein isoform b, ZINC ION
Authors:Walker, J.R, Avvakumov, G.V, Xue, S, Newman, E.M, Mackenzie, F, Sundstrom, M, Arrowsmith, C, Edwards, A, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2005-03-23
Release date:2005-05-03
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:2.1 Angstrom Crystal Structure of the Human Ubiquitin Liagse NIRF
To be Published
2A9U
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BU of 2a9u by Molmil
Structure of the N-terminal domain of Human Ubiquitin carboxyl-terminal hydrolase 8 (USP8)
Descriptor: Ubiquitin carboxyl-terminal hydrolase 8
Authors:Walker, J.R, Avvakumov, G.V, Xue, S, Newman, E.M, Mackenzie, F, Weigelt, J, Sundstrom, M, Arrowsmith, C, Edwards, E, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2005-07-12
Release date:2005-08-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Amino-terminal Dimerization, NRDP1-Rhodanese Interaction, and Inhibited Catalytic Domain Conformation of the Ubiquitin-specific Protease 8 (USP8).
J.Biol.Chem., 281, 2006
1ZKH
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BU of 1zkh by Molmil
Solution structure of a human ubiquitin-like domain in SF3A1
Descriptor: Splicing factor 3 subunit 1
Authors:Lukin, J.A, Dhe-Paganon, S, Guido, V, Lemak, A, Avvakumov, G.V, Xue, S, Newman, E.M, Mackenzie, F, Sundstrom, M, Edwards, A, Arrowsmith, C.H, Structural Genomics Consortium (SGC)
Deposit date:2005-05-02
Release date:2005-05-10
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of a human ubiquitin-like domain in SF3A1
To be Published
5H00
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BU of 5h00 by Molmil
The crystal structure of D-2-haloacid dehalogenase
Descriptor: (R)-2-haloacid dehalogenase
Authors:Wang, Y, Xue, S.
Deposit date:2016-10-02
Release date:2017-10-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:The crystal structure of D-2-haloacid dehalogenase
To Be Published
5GZX
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BU of 5gzx by Molmil
The complex structure of D-2-haloacid dehalogenase mutant with D-2-CPA
Descriptor: (R)-2-Chloropropionic acid, (R)-2-haloacid dehalogenase
Authors:Wang, Y, Xue, S.
Deposit date:2016-10-02
Release date:2017-10-04
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:The complex structure of D-2-haloacid dehalogenase mutant with D-2-CPA
To Be Published
5GZY
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BU of 5gzy by Molmil
The complex structure of D-2-haloacid dehalogenase with L-LA
Descriptor: (2S)-2-HYDROXYPROPANOIC ACID, (R)-2-haloacid dehalogenase
Authors:Wang, Y, Xue, S.
Deposit date:2016-10-02
Release date:2017-10-04
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:The complex structure of D-2-haloacid dehalogenase with L-LA
To Be Published
4RZH
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BU of 4rzh by Molmil
Crystal structure of FabG from Synechocystis sp. PCC 6803
Descriptor: 3-oxoacyl-[acyl-carrier protein] reductase
Authors:Liu, Y, Xue, S.
Deposit date:2014-12-22
Release date:2015-09-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure-directed construction of a high-performance version of the enzyme FabG from the photosynthetic microorganism Synechocystis sp. PCC 6803.
Febs Lett., 589, 2015
3OLN
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BU of 3oln by Molmil
Crystal structure of the SRA domain of E3 ubiquitin-protein ligase UHRF2
Descriptor: E3 ubiquitin-protein ligase UHRF2
Authors:Walker, J.R, Xue, S, Avvakumov, G.V, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2010-08-26
Release date:2010-10-13
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Set and Ring Associated (SRA) domain of human ubiquitin-like containing PHD and RING finger domains 2 (UHRF2)
To be Published
2L3R
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BU of 2l3r by Molmil
NMR structure of UHRF1 Tandem Tudor Domains in a complex with Histone H3 peptide
Descriptor: E3 ubiquitin-protein ligase UHRF1, Histone H3
Authors:Nady, N, Lemak, A, Fares, C, Gutmanas, A, Avvakumov, G, Xue, S, Arrowsmith, C, Structural Genomics Consortium (SGC)
Deposit date:2010-09-21
Release date:2011-04-13
Last modified:2020-02-05
Method:SOLUTION NMR
Cite:Recognition of Multivalent Histone States Associated with Heterochromatin by UHRF1 Protein.
J.Biol.Chem., 286, 2011
3TUG
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BU of 3tug by Molmil
Crystal structure of the HECT domain of ITCH E3 ubiquitin ligase
Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase Itchy homolog, UNKNOWN ATOM OR ION
Authors:Dong, A, Dobrovetsky, E, Xue, S, Butler, C, Wernimont, A, Walker, J.R, Tempel, W, Dhe-Paganon, S, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Tong, Y, Structural Genomics Consortium (SGC)
Deposit date:2011-09-16
Release date:2011-10-12
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Crystal structure of the HECT domain of ITCH E3 ubiquitin ligase
To be Published
2NSQ
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BU of 2nsq by Molmil
Crystal structure of the C2 domain of the human E3 ubiquitin-protein ligase NEDD4-like protein
Descriptor: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase NEDD4-like protein, GLYCEROL
Authors:Walker, J.R, Avvakumov, G.V, Xue, S, Butler-Cole, C, Finerty Jr, P.J, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2006-11-06
Release date:2006-12-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The C2 domain of the human E3 ubiquitin-protein ligase NEDD4-like protein
To be Published
2OB4
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BU of 2ob4 by Molmil
Human Ubiquitin-Conjugating Enzyme CDC34
Descriptor: Ubiquitin-conjugating enzyme E2-32 kDa complementing
Authors:Neculai, D, Avvakumov, G.V, Xue, S, Walker, J.R, Mackenzie, F, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Sicheri, F, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2006-12-18
Release date:2006-12-26
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen.
Mol Cell Proteomics, 11, 2012
2I6T
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BU of 2i6t by Molmil
Orthorhombic Structure of the LDH domain of Human Ubiquitin-conjugating Enzyme E2-like Isoform A
Descriptor: GLYCEROL, SULFATE ION, UBIQUITIN-CONJUGATING ENZYME E2-LIKE ISOFORM A
Authors:Walker, J.R, Avvakumov, G.V, Xue, S, Newman, E.M, Finerty Jr, P.J, Butler-Cole, C, Tempel, W, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S.
Deposit date:2006-08-29
Release date:2006-10-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Investigation into the L-lactate Dehydrogenase Domain of Human Ubiquitin-conjugating Enzyme E2-like Isoform A
To be Published
7WKL
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BU of 7wkl by Molmil
Crystal structure of dihydroxybenzoate decarboxylase mutant F296Y from Aspergillus oryzae in complex with catechol
Descriptor: Amidohydrolase 2, CATECHOL, MAGNESIUM ION, ...
Authors:Fan, Y, Xue, S.
Deposit date:2022-01-10
Release date:2023-01-25
Last modified:2024-01-03
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:The catalytic mechanism of direction-dependent interactions for 2,3-dihydroxybenzoate decarboxylase
Appl.Microbiol.Biotechnol., 107, 2023
2KVR
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BU of 2kvr by Molmil
Solution NMR structure of human ubiquitin specific protease Usp7 UBL domain (residues 537-664). NESG target hr4395c/ SGC-Toronto
Descriptor: Ubiquitin carboxyl-terminal hydrolase 7
Authors:Bezsonova, I, Lemak, A, Avvakumov, G, Xue, S, Dhe-Paganon, S, Montelione, G.T, Arrowsmith, C, Northeast Structural Genomics Consortium (NESG), Structural Genomics Consortium (SGC)
Deposit date:2010-03-25
Release date:2010-04-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:solution structure of the ubiquitin specific protease Usp7 ubiquitin-like domain
To be Published
2NQ3
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BU of 2nq3 by Molmil
Crystal structure of the C2 Domain of Human Itchy Homolog E3 Ubiquitin Protein Ligase
Descriptor: CHLORIDE ION, Itchy homolog E3 ubiquitin protein ligase
Authors:Walker, J.R, Avvakumov, G.V, Xue, S, Butler-Cole, C, Finerty Jr, P.J, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2006-10-30
Release date:2006-11-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The C2 Domain of Human Itchy Homolog E3 Ubiquitin Protein Ligase
To be Published
2O25
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BU of 2o25 by Molmil
Ubiquitin-Conjugating Enzyme E2-25 kDa Complexed With SUMO-1-Conjugating Enzyme UBC9
Descriptor: SUMO-1-conjugating enzyme UBC9, Ubiquitin-conjugating enzyme E2-25 kDa
Authors:Walker, J.R, Avvakumov, G.V, Xue, S, Newman, E.M, Mackenzie, F, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2006-11-29
Release date:2007-01-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A Novel and Unexpected Complex Between the SUMO-1-Conjugating Enzyme UBC9 and the Ubiquitin-Conjugating Enzyme E2-25 kDa
To be Published
2IBI
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BU of 2ibi by Molmil
Covalent Ubiquitin-USP2 Complex
Descriptor: ETHANAMINE, Ubiquitin, Ubiquitin carboxyl-terminal hydrolase 2, ...
Authors:Walker, J.R, Avvakumov, G.V, Bernstein, G, Xue, S, Finerty Jr, P.J, MacKenzie, F, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2006-09-11
Release date:2006-10-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Covalent Ubiquitin-USP2 Complex
To be Published
7WMB
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BU of 7wmb by Molmil
Crystal structure of 2,3-dihydroxybenzoate decarboxylase mutant W23Y from Aspergillus oryzae in complex with catechol
Descriptor: Amidohydrolase 2, CATECHOL, MAGNESIUM ION
Authors:Fan, Y, Xue, S.
Deposit date:2022-01-14
Release date:2023-01-25
Last modified:2024-01-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The catalytic mechanism of direction-dependent interactions for 2,3-dihydroxybenzoate decarboxylase
Appl.Microbiol.Biotechnol., 107, 2023
7WKM
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BU of 7wkm by Molmil
Crystal Structure of 2,3-Dihydroxybenzoate Decarboxylase Complexed with Catechol
Descriptor: Amidohydrolase 2, CATECHOL, MAGNESIUM ION
Authors:Fan, Y, Xue, S.
Deposit date:2022-01-10
Release date:2023-01-25
Last modified:2024-01-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The catalytic mechanism of direction-dependent interactions for 2,3-dihydroxybenzoate decarboxylase
Appl.Microbiol.Biotechnol., 107, 2023
6KH2
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BU of 6kh2 by Molmil
Crystal structure of Nicotinic acid mononucleotide adenylyltransferase mutant P22K/Y84V/Y118D/C132L/W176Y from Escherichia coli
Descriptor: Probable nicotinate-nucleotide adenylyltransferase
Authors:Feng, Y, Xue, S, Zhao, Z, Wang, X.
Deposit date:2019-07-12
Release date:2020-07-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.04 Å)
Cite:Crystal structure of Nicotinic acid mononucleotide adenylyltransferase mutant P22K/Y84V/Y118D/C132L/W176Y from Escherichia coli
To Be Published

219869

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