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PDB: 110 results

7KWW
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BU of 7kww by Molmil
X-ray Crystal Structure of PlyCB Mutant K59H
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, PlyCB
Authors:Williams, D.E, Broendum, S.S, Hayes, B.K, Drinkwater, N, McGowan, S.
Deposit date:2020-12-02
Release date:2021-04-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:High avidity drives the interaction between the streptococcal C1 phage endolysin, PlyC, with the cell surface carbohydrates of Group A Streptococcus.
Mol.Microbiol., 116, 2021
7KWT
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BU of 7kwt by Molmil
X-ray Crystal Structure of PlyCB Mutant Y28H
Descriptor: PlyCB
Authors:Williams, D.E, Broendum, S.S, Hayes, B.K, Drinkwater, N, McGowan, S.
Deposit date:2020-12-02
Release date:2021-04-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:High avidity drives the interaction between the streptococcal C1 phage endolysin, PlyC, with the cell surface carbohydrates of Group A Streptococcus.
Mol.Microbiol., 116, 2021
7KWY
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BU of 7kwy by Molmil
X-ray Crystal Structure of PlyCB Mutant R66K
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, PlyCB
Authors:Williams, D.E, Broendum, S.S, Hayes, B.K, Drinkwater, N, McGowan, S.
Deposit date:2020-12-02
Release date:2021-04-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:High avidity drives the interaction between the streptococcal C1 phage endolysin, PlyC, with the cell surface carbohydrates of Group A Streptococcus.
Mol.Microbiol., 116, 2021
1ZHS
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BU of 1zhs by Molmil
Crystal structure of MVL bound to Man3GlcNAc2
Descriptor: 1,2-ETHANEDIOL, PHOSPHATE ION, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Williams, D.C, Lee, J.Y, Cai, M, Bewley, C.A, Clore, G.M.
Deposit date:2005-04-26
Release date:2005-06-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of the HIV-1 Inhibitory Cyanobacterial Protein MVL Free and Bound to Man3GlcNAc2: STRUCTURAL BASIS FOR SPECIFICITY AND HIGH-AFFINITY BINDING TO THE CORE PENTASACCHARIDE FROM N-LINKED OLIGOMANNOSIDE.
J.Biol.Chem., 280, 2005
1ZHQ
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BU of 1zhq by Molmil
Crystal structure of apo MVL
Descriptor: 1,2-ETHANEDIOL, PHOSPHATE ION, mannan-binding lectin
Authors:Williams, D.C, Lee, J.Y, Cai, M, Bewley, C.A, Clore, G.M.
Deposit date:2005-04-26
Release date:2005-06-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of the HIV-1 Inhibitory Cyanobacterial Protein MVL Free and Bound to Man3GlcNAc2: STRUCTURAL BASIS FOR SPECIFICITY AND HIGH-AFFINITY BINDING TO THE CORE PENTASACCHARIDE FROM N-LINKED OLIGOMANNOSIDE.
J.Biol.Chem., 280, 2005
2MOE
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BU of 2moe by Molmil
Solution structure of MBD4 methyl-cytosine binding domain bound to methylated DNA
Descriptor: DNA (5'-D(*GP*AP*GP*CP*(5CM)P*GP*AP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*TP*(5CM)P*GP*GP*CP*TP*C)-3'), Methyl-CpG-binding domain protein 4
Authors:Williams, D.C, Walavalkar, N.M.
Deposit date:2014-04-24
Release date:2014-09-10
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure and intramolecular exchange of methyl-cytosine binding domain protein 4 (MBD4) on DNA suggests a mechanism to scan for mCpG/TpG mismatches.
Nucleic Acids Res., 42, 2015
2M7D
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BU of 2m7d by Molmil
Trp-cage 16b P12W: a Hyperstable Miniprotein
Descriptor: Trp-Cage mini-protein
Authors:Williams, D.V, Andersen, N.H, Kier, B.L.
Deposit date:2013-04-19
Release date:2013-12-25
Last modified:2014-01-15
Method:SOLUTION NMR
Cite:Circular Permutation of the Trp-cage: Fold Rescue upon Addition of a Hydrophobic Staple.
RSC Adv, 2013, 2013
1BYG
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BU of 1byg by Molmil
KINASE DOMAIN OF HUMAN C-TERMINAL SRC KINASE (CSK) IN COMPLEX WITH INHIBITOR STAUROSPORINE
Descriptor: PROTEIN (C-TERMINAL SRC KINASE), STAUROSPORINE
Authors:Antson, A.A, Lamers, M.B.A.C, Scott, R.K, Williams, D.H, Hubbard, R.E.
Deposit date:1998-10-14
Release date:1999-10-14
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the protein tyrosine kinase domain of C-terminal Src kinase (CSK) in complex with staurosporine.
J.Mol.Biol., 285, 1999
8SH4
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BU of 8sh4 by Molmil
Crystal structure of the tRNA (m1G37) methyltransferase apoenzyme from Anaplasma phagocytophilum
Descriptor: GLYCEROL, tRNA (guanine-N(1)-)-methyltransferase
Authors:Jannotta, C, Edele, D, Levanti, D, Carson, M, Prucha, G, Caesar, J, Picchiello, C, Collins, K, Garland, E, Handley-Pendleton, J, Hernandez, V, Leffler, S, Williams, D, Stojanoff, V, Perez, A, Halloran, J, Bolen, R.
Deposit date:2023-04-13
Release date:2024-04-17
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of the m1G37 tRNA methyltransferase apoenzyme from Anaplasma phagocytophilum
To Be Published
3S1A
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BU of 3s1a by Molmil
Crystal structure of the phosphorylation-site double mutant S431E/T432E of the KaiC circadian clock protein
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Circadian clock protein kinase kaiC, MAGNESIUM ION
Authors:Pattanayek, R, Williams, D.W, Rossi, G, Weigand, S, Mori, T, Johnson, C.H, Stewart, P.L, Egli, M.
Deposit date:2011-05-14
Release date:2011-09-21
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Combined SAXS/EM Based Models of the S. elongatus Post-Translational Circadian Oscillator and its Interactions with the Output His-Kinase SasA.
Plos One, 6, 2011
7RD1
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BU of 7rd1 by Molmil
The Capsid Structure of the ChAdOx1 viral vector/chimpanzee adenovirus Y25
Descriptor: Hexon protein, Hexon-interlacing protein, Penton protein, ...
Authors:Baker, A.T, Boyd, R.J, Sarkar, D, Vermaas, J.V, Williams, D, Singharoy, A.
Deposit date:2021-07-08
Release date:2021-12-15
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:ChAdOx1 interacts with CAR and PF4 with implications for thrombosis with thrombocytopenia syndrome.
Sci Adv, 7, 2021
7B02
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BU of 7b02 by Molmil
Thioredoxin glutathione reductase from Schistosoma mansoni in complex with 4-Hydroxy-7-methyl-1,8-naphthyridine-3-carboxylic acid
Descriptor: 4-Hydroxy-7-methyl-1,8-naphthyridine-3-carboxylic acid, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Fata, F, Silvestri, I, Williams, D.L, Angelucci, F.
Deposit date:2020-11-18
Release date:2021-05-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Probing the Surface of a Parasite Drug Target Thioredoxin Glutathione Reductase Using Small Molecule Fragments.
Acs Infect Dis., 7, 2021
7PAD
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BU of 7pad by Molmil
The crystal structure of DW-0254 in complex with PDE6D
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, NICKEL (II) ION, ...
Authors:Beaumont, E, Williams, D.
Deposit date:2021-07-29
Release date:2022-06-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Validation of a small molecule inhibitor of PDE6D-RAS interaction with favorable anti-leukemic effects.
Blood Cancer J, 12, 2022
7PAC
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BU of 7pac by Molmil
The crystal structure of PDE6D in the apo state
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, NICKEL (II) ION, Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta
Authors:Beaumont, E, Williams, D.
Deposit date:2021-07-29
Release date:2022-06-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Validation of a small molecule inhibitor of PDE6D-RAS interaction with favorable anti-leukemic effects.
Blood Cancer J, 12, 2022
7PAE
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BU of 7pae by Molmil
The crystal structure of Deltarasin in complex with PDE6D
Descriptor: ACETIC ACID, Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta, deltarasin
Authors:Beaumont, E, Williams, D.
Deposit date:2021-07-29
Release date:2022-06-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Validation of a small molecule inhibitor of PDE6D-RAS interaction with favorable anti-leukemic effects.
Blood Cancer J, 12, 2022
6ZLB
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BU of 6zlb by Molmil
Thioredoxin glutathione reductase from Schistosoma mansoni in complex with Indole-3-carbinol
Descriptor: 1~{H}-indol-3-ylmethanol, DIMETHYL SULFOXIDE, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Fata, F, Silvestri, I, Williams, D.L, Angelucci, F.
Deposit date:2020-06-30
Release date:2021-05-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Probing the Surface of a Parasite Drug Target Thioredoxin Glutathione Reductase Using Small Molecule Fragments.
Acs Infect Dis., 7, 2021
6PNJ
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BU of 6pnj by Molmil
Structure of Photosystem I Acclimated to Far-red Light
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
Authors:Gisriel, C.J, Shen, G, Kurashov, V, Ho, M, Zhang, S, Williams, D, Golbeck, J.H, Fromme, P, Bryant, D.A.
Deposit date:2019-07-02
Release date:2020-02-12
Last modified:2020-02-26
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:The structure of Photosystem I acclimated to far-red light illuminates an ecologically important acclimation process in photosynthesis
Sci Adv, 6, 2020
6ZLP
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BU of 6zlp by Molmil
Thioredoxin glutathione reductase from Schistosoma mansoni in complex with 4-Aminopiazthiole
Descriptor: 2,1,3-benzothiadiazol-4-amine, CALCIUM ION, DIMETHYL SULFOXIDE, ...
Authors:Fata, F, Silvestri, I, Williams, D.L, Angelucci, F.
Deposit date:2020-06-30
Release date:2021-05-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Probing the Surface of a Parasite Drug Target Thioredoxin Glutathione Reductase Using Small Molecule Fragments.
Acs Infect Dis., 7, 2021
6CYM
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BU of 6cym by Molmil
Reversible Covalent Direct Thrombin Inhibitors
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-methoxybenzoic acid, Prothrombin, ...
Authors:Sivaraja, M, Williams, D.C.
Deposit date:2018-04-06
Release date:2018-05-09
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Reversible covalent direct thrombin inhibitors.
PLoS ONE, 13, 2018
6VH7
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BU of 6vh7 by Molmil
Doublet Tau Fibril from Corticobasal Degeneration Human Brain Tissue
Descriptor: Microtubule-associated protein tau
Authors:Arakhamia, T, Lee, C.E, Carlomagno, Y, Duong, D.M, Kundinger, S.R, Wang, K, Williams, D, DeTure, M, Dickson, D.W, Cook, C.N, Seyfried, N.T, Petrucelli, L, Fitzpatrick, A.W.P.
Deposit date:2020-01-09
Release date:2020-03-04
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Posttranslational Modifications Mediate the Structural Diversity of Tauopathy Strains.
Cell, 180, 2020
6NWA
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BU of 6nwa by Molmil
The structure of the photosystem I IsiA super-complex
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
Authors:Toporik, H, Li, J, Williams, D, Chiu, P.L, Mazor, Y.
Deposit date:2019-02-06
Release date:2019-05-29
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.48 Å)
Cite:The structure of the stress-induced photosystem I-IsiA antenna supercomplex.
Nat.Struct.Mol.Biol., 26, 2019
6UZV
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BU of 6uzv by Molmil
The structure of a red shifted photosystem I complex
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
Authors:Toporik, H, Williams, D, Chiu, P.L, Mazor, Y.
Deposit date:2019-11-15
Release date:2020-09-16
Last modified:2020-11-04
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:The structure of a red-shifted photosystem I reveals a red site in the core antenna.
Nat Commun, 11, 2020
6ZST
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BU of 6zst by Molmil
Thioredoxin glutathione reductase from Schistosoma mansoni in complex with 3-(3-methoxyquinoxalin-2-yl)propanoic acid
Descriptor: 3-(3-methoxyquinoxalin-2-yl)propanoic acid, DI(HYDROXYETHYL)ETHER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Fata, F, Silvestri, I, Williams, D.L, Angelucci, F.
Deposit date:2020-07-16
Release date:2021-05-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Probing the Surface of a Parasite Drug Target Thioredoxin Glutathione Reductase Using Small Molecule Fragments.
Acs Infect Dis., 7, 2021
6VHA
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BU of 6vha by Molmil
Singlet Tau Fibril from Corticobasal Degeneration Human Brain Tissue
Descriptor: Microtubule-associated protein tau
Authors:Arakhamia, T, Lee, C.E, Carlomagno, Y, Duong, D.M, Kundinger, S.R, Wang, K, Williams, D, DeTure, M, Dickson, D.W, Cook, C.N, Seyfried, N.T, Petrucelli, L, Fitzpatrick, A.W.P.
Deposit date:2020-01-09
Release date:2020-03-04
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Posttranslational Modifications Mediate the Structural Diversity of Tauopathy Strains.
Cell, 180, 2020
6VHL
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BU of 6vhl by Molmil
Paired Helical Filament from Alzheimer's Disease Human Brain Tissue
Descriptor: GLYCINE, Microtubule-associated protein tau
Authors:Arakhamia, T, Lee, C.E, Carlomagno, Y, Duong, D.M, Kundinger, S.R, Wang, K, Williams, D, DeTure, M, Dickson, D.W, Cook, C.N, Seyfried, N.T, Petrucelli, L, Fitzpatrick, A.W.P.
Deposit date:2020-01-10
Release date:2020-03-04
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Posttranslational Modifications Mediate the Structural Diversity of Tauopathy Strains.
Cell, 180, 2020

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