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PDB: 105 results

5TWX
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BU of 5twx by Molmil
Crystal Structure of BRD9 bromodomain
Descriptor: Bromodomain-containing protein 9, N-[6-({2-[(3S)-2,6-dioxopiperidin-3-yl]-1,3-dioxo-2,3-dihydro-1H-isoindol-4-yl}oxy)hexyl]-2-(4-{2-[N-(1,1-dioxo-1lambda~6~-thian-4-yl)carbamimidoyl]-5-methyl-4-oxo-4,5-dihydrothieno[3,2-c]pyridin-7-yl}-2-methoxyphenoxy)acetamide
Authors:Seo, H.-S, Dhe-Paganon, S.
Deposit date:2016-11-15
Release date:2017-09-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Degradation of the BAF Complex Factor BRD9 by Heterobifunctional Ligands.
Angew. Chem. Int. Ed. Engl., 56, 2017
7SZD
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BU of 7szd by Molmil
Crystal Structure Analysis of human PRPK complex with a compound
Descriptor: 2-[(3R)-3-methyl-2,6-dioxopiperidin-3-yl]-1,3-dioxo-2,3-dihydro-1H-isoindole-5-carboxylic acid, EKC/KEOPS complex subunit TP53RK, EKC/KEOPS complex subunit TPRKB
Authors:Seo, H.-S, Dhe-Paganon, S.
Deposit date:2021-11-27
Release date:2022-12-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Development of PRPK Directed Phthalimides
Biorxiv, 2021
7SZC
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BU of 7szc by Molmil
Crystal Structure Analysis of human PRPK complex with a compound
Descriptor: 4-hydroxy-2-[(3R)-3-methyl-2,6-dioxopiperidin-3-yl]-1H-isoindole-1,3(2H)-dione, D(-)-TARTARIC ACID, EKC/KEOPS complex subunit TP53RK, ...
Authors:Seo, H.-S, Dhe-Paganon, S.
Deposit date:2021-11-27
Release date:2022-12-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Development of PRPK Directed Phthalimides
Biorxiv, 2021
7SZB
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BU of 7szb by Molmil
Crystal Structure Analysis of human PRPK complex with a compound
Descriptor: 5-amino-2-[(3R)-2,6-dioxopiperidin-3-yl]-1H-isoindole-1,3(2H)-dione, CITRATE ANION, EKC/KEOPS complex subunit TP53RK, ...
Authors:Seo, H.-S, Dhe-Paganon, S.
Deposit date:2021-11-27
Release date:2023-01-25
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Development of PRPK Directed Phthalimides
Biorxiv, 2021
7SZA
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BU of 7sza by Molmil
Crystal Structure Analysis of human PRPK complex with a compound
Descriptor: 4-amino-2-[(3R)-2,6-dioxopiperidin-3-yl]-1H-isoindole-1,3(2H)-dione, CITRATE ANION, EKC/KEOPS complex subunit TP53RK, ...
Authors:Seo, H.-S, Dhe-Paganon, S.
Deposit date:2021-11-27
Release date:2023-01-25
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Development of PRPK Directed Phthalimides
Biorxiv, 2021
7U5W
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BU of 7u5w by Molmil
Crystal Structure Analysis of human Carbonic anhydrase 2
Descriptor: Carbonic anhydrase 2, ZINC ION
Authors:Seo, H.-S, Dhe-Paganon, S.
Deposit date:2022-03-02
Release date:2023-03-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:Crystal Structure Analysis of human Carbonic anhydrase 2
To Be Published
7U5X
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BU of 7u5x by Molmil
Crystal Structure Analysis of human Carbonic anhydrase 2
Descriptor: Carbonic anhydrase 2, ZINC ION
Authors:Seo, H.-S, Dhe-Paganon, S.
Deposit date:2022-03-02
Release date:2023-03-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Crystal Structure Analysis of human Carbonic anhydrase 2
To Be Published
5WHH
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BU of 5whh by Molmil
Crystal Structure of Bcl-2-related protein A1 in complex with stapled peptide (AQ7)T(0EH)LRRFGD(MK8)INFRQ(NH2)
Descriptor: (AQ7)T(0EH)LRRFGD(MK8)INFRQ(NH2), Bcl-2-related protein A1, CHLORIDE ION
Authors:Seo, H.-S, Dhe-Paganon, S.
Deposit date:2017-07-17
Release date:2018-01-17
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Crystal Structures of Anti-apoptotic BFL-1 and Its Complex with a Covalent Stapled Peptide Inhibitor.
Structure, 26, 2018
5VS6
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BU of 5vs6 by Molmil
Structure of DUB complex
Descriptor: ACETATE ION, GLYCEROL, N-[3-({4-hydroxy-1-[(3R)-3-phenylbutanoyl]piperidin-4-yl}methyl)-4-oxo-3,4-dihydroquinazolin-7-yl]-3-(4-methylpiperazin-1-yl)propanamide, ...
Authors:Seo, H.-S, Dhe-Paganon, S.
Deposit date:2017-05-11
Release date:2017-12-20
Last modified:2018-01-03
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Structure-Guided Development of a Potent and Selective Non-covalent Active-Site Inhibitor of USP7.
Cell Chem Biol, 24, 2017
5VSK
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BU of 5vsk by Molmil
Structure of DUB complex
Descriptor: 7-chloro-3-({4-hydroxy-1-[(3S)-3-phenylbutanoyl]piperidin-4-yl}methyl)quinazolin-4(3H)-one, Ubiquitin carboxyl-terminal hydrolase 7, ZINC ION
Authors:Seo, H.-Y, Dhe-Paganon, S.
Deposit date:2017-05-11
Release date:2017-12-20
Last modified:2018-01-03
Method:X-RAY DIFFRACTION (3.33 Å)
Cite:Structure-Guided Development of a Potent and Selective Non-covalent Active-Site Inhibitor of USP7.
Cell Chem Biol, 24, 2017
5VSB
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BU of 5vsb by Molmil
Structure of DUB complex
Descriptor: 7-chloro-3-{[4-hydroxy-1-(3-phenylpropanoyl)piperidin-4-yl]methyl}quinazolin-4(3H)-one, Ubiquitin carboxyl-terminal hydrolase 7
Authors:Seo, H.-S, Dhe-Paganon, S.
Deposit date:2017-05-11
Release date:2017-12-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure-Guided Development of a Potent and Selective Non-covalent Active-Site Inhibitor of USP7.
Cell Chem Biol, 24, 2017
7S7G
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BU of 7s7g by Molmil
Crystal Structure Analysis of Human VLCAD
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Very long-chain specific acyl-CoA dehydrogenase, mitochondrial
Authors:Seo, H.-S, Dhe-Paganon, S.
Deposit date:2021-09-15
Release date:2022-09-28
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Crystal Structure Analysis of Human VLCAD
To Be Published
7TUN
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BU of 7tun by Molmil
Crystal structure analysis of human CKB complex with a covalent compound
Descriptor: (2S)-4-(chloroacetyl)-3,4-dihydro-2H-1,4-benzoxazine-2-carboxamide, Creatine kinase B-type
Authors:Seo, H.-S, Dhe-Paganon, S.
Deposit date:2022-02-03
Release date:2023-02-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.93 Å)
Cite:Crystal Structure Analysis of human CKB complex with a covalent compound
To Be Published
7TUO
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BU of 7tuo by Molmil
Crystal structure analysis of human USP28 complex with a compound
Descriptor: 7-amino-N-(2-{4-[(1R,3s,5S)-8-azabicyclo[3.2.1]octan-3-yl]phenyl}ethyl)-3-methylthieno[2,3-b]pyrazine-6-carboxamide, CHLORIDE ION, Ubiquitin carboxyl-terminal hydrolase 28
Authors:Seo, H.-S, Dhe-Paganon, S.
Deposit date:2022-02-03
Release date:2023-02-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Crystal Structure Analysis of human USP28 complex with a compound
To Be Published
6MBZ
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BU of 6mbz by Molmil
Structure of Transcription Factor
Descriptor: Signal transducer and activator of transcription 5B
Authors:Seo, H.-S, Dhe-Paganon, S.
Deposit date:2018-08-30
Release date:2019-06-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:Structural and functional consequences of the STAT5BN642Hdriver mutation.
Nat Commun, 10, 2019
6MBW
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BU of 6mbw by Molmil
Structure of Transcription Factor
Descriptor: Signal transducer and activator of transcription 5B
Authors:Seo, H.-S, Dhe-Paganon, S.
Deposit date:2018-08-30
Release date:2019-06-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.29 Å)
Cite:Structural and functional consequences of the STAT5BN642H driver mutation.
Nat Commun, 10, 2019
8EBK
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BU of 8ebk by Molmil
Crystal Structure Analysis of xHDMX in complex with the stapled peptide PROTAC analog
Descriptor: ACE-LEU-THR-PHE-0EH-GLU-TYR-TRP-ALA-GLN-LEU-MK8-SER-ALA-ALA, HDMX
Authors:Seo, H.-S, Dhe-Paganon, S.
Deposit date:2022-08-31
Release date:2023-10-04
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Crystal Structure Analysis of xHDMX in complex with the stapled peptide PROTAC analog
To Be Published
5ITS
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BU of 5its by Molmil
Crystal structure of LOG from Corynebacterium glutamicum
Descriptor: Cytokinin riboside 5'-monophosphate phosphoribohydrolase, GLYCEROL, PHOSPHATE ION
Authors:Seo, H.-G, Kim, K.-J.
Deposit date:2016-03-17
Release date:2016-08-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for cytokinin production by LOG from Corynebacterium glutamicum
Sci Rep, 6, 2016
7DG5
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BU of 7dg5 by Molmil
Crystal structure of mouse Smc1-Smc3 hinge domain containing a D574Y mutation
Descriptor: Structural maintenance of chromosomes protein 1A, Structural maintenance of chromosomes protein 3
Authors:Seo, H, Noh, H, Oh, B.-H.
Deposit date:2020-11-11
Release date:2021-11-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Folding of cohesin's coiled coil is important for Scc2/4-induced association with chromosomes.
Elife, 10, 2021
5WHI
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BU of 5whi by Molmil
Crystal Structure of Bcl-2-related protein A1
Descriptor: Bcl-2-related protein A1, CACODYLIC ACID
Authors:Seo, H.-S, Dhe-Paganon, S.
Deposit date:2017-07-17
Release date:2018-01-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Crystal Structures of Anti-apoptotic BFL-1 and Its Complex with a Covalent Stapled Peptide Inhibitor.
Structure, 26, 2018
5TVT
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BU of 5tvt by Molmil
Structure of Maternal Embryonic Leucine Zipper Kinase
Descriptor: 9-(3,5-dichloro-4-hydroxyphenyl)-1-{trans-4-[(dimethylamino)methyl]cyclohexyl}-3-methyl-3,4-dihydropyrimido[5,4-c][1,5]naphthyridin-2(1H)-one, Maternal embryonic leucine zipper kinase
Authors:Seo, H.-Y, Huang, H, Gray, N.S, Dhe-Paganon, S.
Deposit date:2016-11-10
Release date:2017-11-15
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Structure of Maternal Embryonic Leucine Zipper Kinase
To Be Published
5WQ3
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BU of 5wq3 by Molmil
Crystal structure of type-II LOG from Corynebacterium glutamicum
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Cytokinin riboside 5'-monophosphate phosphoribohydrolase, ...
Authors:Seo, H, Kim, K.-J.
Deposit date:2016-11-22
Release date:2017-04-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis for a novel type of cytokinin-activating protein
Sci Rep, 7, 2017
7DIB
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BU of 7dib by Molmil
Crystal structure of D-threonine aldolase from Filomicrobium marinum
Descriptor: D-threonine aldolase
Authors:Seo, H, Kim, K.-J.
Deposit date:2020-11-18
Release date:2021-08-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Cbeta-Selective Aldol Addition of d-Threonine Aldolase by Spatial Constraint of Aldehyde Binding.
Acs Catalysis, 11, 2021
3F7F
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BU of 3f7f by Molmil
Structure of Nup120
Descriptor: MERCURY (II) ION, Nucleoporin NUP120
Authors:Seo, H.S, Ma, Y, Debler, E.W, Blobel, G, Hoelz, A.
Deposit date:2008-11-08
Release date:2009-08-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural and functional analysis of Nup120 suggests ring formation of the Nup84 complex.
Proc.Natl.Acad.Sci.USA, 106, 2009
6ISS
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BU of 6iss by Molmil
Lignin peroxidase H8 triple mutant S49C/A67C/H239
Descriptor: CALCIUM ION, Ligninase H8, PROTOPORPHYRIN IX CONTAINING FE
Authors:Seo, H, Son, H, Kim, K.-J.
Deposit date:2018-11-19
Release date:2019-11-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Extra disulfide and ionic salt bridge improves the thermostability of lignin peroxidase H8 under acidic condition
Enzyme.Microb.Technol., 148, 2021

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PDB entries from 2024-05-15

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