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PDB: 78 results

2ALZ
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Ternary Complex of hPoli with DNA and dCTP
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*AP*GP*GP*AP*CP*CP*(DOC))-3', 5'-D(*TP*GP*GP*GP*GP*TP*CP*CP*T)-3', ...
Authors:Nair, D.T, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K.
Deposit date:2005-08-08
Release date:2005-10-25
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Human DNA Polymerase iota Incorporates dCTP Opposite Template G via a G.C+ Hoogsteen Base Pair.
Structure, 13, 2005
3BJY
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BU of 3bjy by Molmil
Catalytic core of Rev1 in complex with DNA (modified template guanine) and incoming nucleotide
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*DAP*DTP*DCP*DCP*DTP*DCP*DCP*DCP*DCP*DTP*DAP*(DOC))-3'), DNA (5'-D(*DTP*DAP*DAP*(P)P*DGP*DTP*DAP*DGP*DGP*DGP*DGP*DAP*DGP*DGP*DAP*DT)-3'), ...
Authors:Nair, D.T, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K.
Deposit date:2007-12-05
Release date:2008-10-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Protein-template-directed synthesis across an acrolein-derived DNA adduct by yeast Rev1 DNA polymerase
Structure, 16, 2008
1T3N
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BU of 1t3n by Molmil
Structure of the catalytic core of DNA polymerase Iota in complex with DNA and dTTP
Descriptor: MAGNESIUM ION, Primer DNA strand, THYMIDINE-5'-TRIPHOSPHATE, ...
Authors:Nair, D.T, Johnson, R.E, Prakash, S, Prakash, L, Aggarwal, A.K.
Deposit date:2004-04-27
Release date:2004-07-20
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Replication by human DNA polymerase-iota occurs by Hoogsteen base-pairing.
Nature, 430, 2004
1KCS
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BU of 1kcs by Molmil
CRYSTAL STRUCTURE OF ANTIBODY PC282 IN COMPLEX WITH PS1 PEPTIDE
Descriptor: PC282 IMMUNOGLOBULIN, PS1 peptide
Authors:Nair, D.T, Singh, K, Siddiqui, Z, Nayak, B.P, Rao, K.V.S, Salunke, D.M.
Deposit date:2001-11-11
Release date:2002-05-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Epitope recognition by diverse antibodies suggests conformational convergence in an antibody response.
J.Immunol., 168, 2002
1KCU
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BU of 1kcu by Molmil
CRYSTAL STRUCTURE OF ANTIBODY PC287
Descriptor: PC287 IMMUNOGLOBULIN
Authors:Nair, D.T, Singh, K, Siddiqui, Z, Nayak, B.P, Rao, K.V.S, Salunke, D.M.
Deposit date:2001-11-11
Release date:2002-05-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Epitope recognition by diverse antibodies suggests conformational convergence in an antibody response.
J.Immunol., 168, 2002
1KCV
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BU of 1kcv by Molmil
Crystal structure of antibody pc282
Descriptor: PC282 IMMUNOGLOBULIN
Authors:Nair, D.T, Singh, K, Siddiqui, Z, Nayak, B.P, Rao, K.V, Salunke, D.M.
Deposit date:2001-11-11
Release date:2002-05-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Epitope recognition by diverse antibodies suggests conformational convergence in an antibody response.
J.Immunol., 168, 2002
1KC5
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CRYSTAL STRUCTURE OF ANTIBODY PC287 IN COMPLEX WITH PS1 PEPTIDE
Descriptor: PC287 Immunoglobulin, PS1 peptide
Authors:Nair, D.T, Singh, K, Siddiqui, Z, Nayak, B.P, Rao, K.V, Salunke, D.M.
Deposit date:2001-11-07
Release date:2002-07-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Epitope recognition by diverse antibodies suggests conformational convergence in an antibody response.
J.Immunol., 168, 2002
2AQ4
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Ternary complex of the catalytic core of REV1 with DNA and dCTP.
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*C)-3', 5'-D(*TP*AP*AP*GP*GP*TP*AP*GP*GP*GP*GP*AP*GP*GP*AP*T)-3', ...
Authors:Nair, D.T, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K.
Deposit date:2005-08-17
Release date:2005-10-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Rev1 employs a novel mechanism of DNA synthesis using a protein template.
Science, 309, 2005
2DPI
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BU of 2dpi by Molmil
Ternary complex of hPoli with DNA and dCTP
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*AP*GP*GP*AP*CP*CP*(DOC))-3', 5'-D(*TP*(EDA)P*GP*GP*GP*TP*CP*CP*T)-3', ...
Authors:Nair, D.T, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K.
Deposit date:2006-05-12
Release date:2006-07-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Hoogsteen base pair formation promotes synthesis opposite the 1,N(6)-ethenodeoxyadenosine lesion by human DNA polymerase iota.
Nat.Struct.Mol.Biol., 13, 2006
2FLP
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Binary complex of the catalytic core of human DNA polymerase iota with DNA (template G)
Descriptor: DNA polymerase iota, DNA primer strand, DNA template strand
Authors:Nair, D.T, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K.
Deposit date:2006-01-06
Release date:2006-12-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:An incoming nucleotide imposes an anti to syn conformational change on the templating purine in the human DNA polymerase-iota active site.
Structure, 14, 2006
2FLL
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BU of 2fll by Molmil
Ternary complex of human DNA polymerase iota with DNA and dTTP
Descriptor: DNA polymerase iota, DNA primer strand, DNA template strand, ...
Authors:Nair, D.T, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K.
Deposit date:2006-01-06
Release date:2006-12-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:An incoming nucleotide imposes an anti to syn conformational change on the templating purine in the human DNA polymerase-iota active site.
Structure, 14, 2006
2DPJ
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BU of 2dpj by Molmil
structure of hPoli with DNA and dTTP
Descriptor: 5'-D(*AP*GP*GP*AP*CP*CP*(DOC))-3', 5'-D(*TP*(EDA)P*GP*GP*GP*TP*CP*CP*T)-3', DNA polymerase iota, ...
Authors:Nair, D.T, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K.
Deposit date:2006-05-12
Release date:2006-07-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Hoogsteen base pair formation promotes synthesis opposite the 1,N(6)-ethenodeoxyadenosine lesion by human DNA polymerase iota.
Nat.Struct.Mol.Biol., 13, 2006
2FLN
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BU of 2fln by Molmil
binary complex of catalytic core of human DNA polymerase iota with DNA (template A)
Descriptor: DNA polymerase iota, DNA primer strand, DNA template strand
Authors:Nair, D.T, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K.
Deposit date:2006-01-06
Release date:2006-12-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:An incoming nucleotide imposes an anti to syn conformational change on the templating purine in the human DNA polymerase-iota active site.
Structure, 14, 2006
6JUR
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BU of 6jur by Molmil
MsDpo4-DNA complex 5
Descriptor: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, DNA (5'-D(*TP*CP*TP*GP*GP*GP*GP*TP*CP*CP*TP*A)-3'), DNA polymerase IV, ...
Authors:Nair, D.T, Johnson, M.K.
Deposit date:2019-04-15
Release date:2020-02-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:A polar filter in DNA polymerases prevents ribonucleotide incorporation.
Nucleic Acids Res., 47, 2019
6JUQ
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BU of 6juq by Molmil
mutant PolIV-DNA incoming nucleotide complex 2
Descriptor: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, DNA (5'-D(P*CP*TP*GP*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), DNA (5'-D(P*GP*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), ...
Authors:Nair, D.T, Johnson, M.K.
Deposit date:2019-04-15
Release date:2020-02-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:A polar filter in DNA polymerases prevents ribonucleotide incorporation.
Nucleic Acids Res., 47, 2019
6JUS
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BU of 6jus by Molmil
MsDpo4-DNA complex 6
Descriptor: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, DNA (5'-D(*TP*CP*TP*GP*GP*GP*GP*TP*CP*CP*TP*AP*G)-3'), DNA polymerase IV, ...
Authors:Nair, D.T, Johnson, M.K.
Deposit date:2019-04-15
Release date:2020-02-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A polar filter in DNA polymerases prevents ribonucleotide incorporation.
Nucleic Acids Res., 47, 2019
6JUL
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BU of 6jul by Molmil
MsDpo4-DNA complex 1
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(P*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), DNA polymerase IV, ...
Authors:Nair, D.T, Johnson, M.K.
Deposit date:2019-04-15
Release date:2020-02-19
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A polar filter in DNA polymerases prevents ribonucleotide incorporation.
Nucleic Acids Res., 47, 2019
6JUM
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BU of 6jum by Molmil
MsDpo4-DNA complex 2
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(P*TP*AP*GP*GP*AP*CP*CP*C)-3'), DNA polymerase IV, ...
Authors:Nair, D.T, Johnson, M.J.
Deposit date:2019-04-15
Release date:2020-02-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:A polar filter in DNA polymerases prevents ribonucleotide incorporation.
Nucleic Acids Res., 47, 2019
6JUN
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BU of 6jun by Molmil
MsDpo4-DNA complex 3
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(P*TP*AP*GP*GP*AP*CP*CP*C)-3'), DNA polymerase IV, ...
Authors:Nair, D.T, Johnson, M.K.
Deposit date:2019-04-15
Release date:2020-02-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:A polar filter in DNA polymerases prevents ribonucleotide incorporation.
Nucleic Acids Res., 47, 2019
6JUP
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BU of 6jup by Molmil
Mutant PolIV-DNA incoming nucleotide complex
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(P*CP*TP*GP*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*CP*C)-3'), DNA (5'-D(P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), ...
Authors:Nair, D.T, Johnson, M.K.
Deposit date:2019-04-15
Release date:2020-02-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:A polar filter in DNA polymerases prevents ribonucleotide incorporation.
Nucleic Acids Res., 47, 2019
6JUO
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BU of 6juo by Molmil
MsDpo4-DNA complex 4
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(P*CP*TP*GP*GP*GP*GP*TP*CP*CP*TP*AP*GP*G)-3'), DNA polymerase IV, ...
Authors:Nair, D.T, Johnson, M.K.
Deposit date:2019-04-15
Release date:2020-02-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:A polar filter in DNA polymerases prevents ribonucleotide incorporation.
Nucleic Acids Res., 47, 2019
4Q44
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BU of 4q44 by Molmil
Polymerase-Damaged DNA Complex
Descriptor: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*TP*CP*TP*AP*(RDG)P*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), DNA polymerase IV, ...
Authors:Nair, D.T, Kottur, J, Sharma, A.
Deposit date:2014-04-13
Release date:2015-05-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Unique structural features in DNA polymerase IV enable efficient bypass of the N2 adduct induced by the nitrofurazone antibiotic
Structure, 23, 2015
4IRC
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BU of 4irc by Molmil
Polymerase-DNA complex
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*TP*AP*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), ...
Authors:Nair, D.T, Sharma, A.
Deposit date:2013-01-14
Release date:2013-04-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.67 Å)
Cite:A strategically located serine residue is critical for the mutator activity of DNA polymerase IV from Escherichia coli.
Nucleic Acids Res., 41, 2013
4IRD
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BU of 4ird by Molmil
Structure of Polymerase-DNA complex
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA (5'-D(*CP*TP*AP*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), ...
Authors:Nair, D.T, Sharma, A.
Deposit date:2013-01-14
Release date:2013-04-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:A strategically located serine residue is critical for the mutator activity of DNA polymerase IV from Escherichia coli.
Nucleic Acids Res., 41, 2013
4IRK
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structure of Polymerase-DNA complex, dna
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*TP*A*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*(DOC))-3'), DNA (5'-D(*TP*CP*TP*AP*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'), ...
Authors:Nair, D.T, Sharma, A.
Deposit date:2013-01-14
Release date:2013-04-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:A strategically located serine residue is critical for the mutator activity of DNA polymerase IV from Escherichia coli.
Nucleic Acids Res., 41, 2013

 

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