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PDB: 262 results

1CLI
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BU of 1cli by Molmil
X-RAY CRYSTAL STRUCTURE OF AMINOIMIDAZOLE RIBONUCLEOTIDE SYNTHETASE (PURM), FROM THE E. COLI PURINE BIOSYNTHETIC PATHWAY, AT 2.5 A RESOLUTION
Descriptor: PROTEIN (PHOSPHORIBOSYL-AMINOIMIDAZOLE SYNTHETASE), SULFATE ION
Authors:Li, C, Kappock, T.J, Stubbe, J, Weaver, T.M, Ealick, S.E.
Deposit date:1999-04-28
Release date:1999-10-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:X-ray crystal structure of aminoimidazole ribonucleotide synthetase (PurM), from the Escherichia coli purine biosynthetic pathway at 2.5 A resolution.
Structure Fold.Des., 7, 1999
5YEI
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Mechanistic insight into the regulation of Pseudomonas aeruginosa aspartate kinase
Descriptor: Aspartokinase, GLYCEROL, LYSINE, ...
Authors:Li, C, Yang, M, Liu, L, Peng, C, Li, T, He, L, Song, Y, Zhu, Y, Bao, R.
Deposit date:2017-09-17
Release date:2018-08-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Mechanistic insights into the allosteric regulation of Pseudomonas aeruginosa aspartate kinase.
Biochem.J., 475, 2018
7QOT
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BU of 7qot by Molmil
Factor XI and Plasma Kallikrein apple domain structures reveals different kininogen bound complexes
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Coagulation factor XIa heavy chain, Kininogen-1 light chain, ...
Authors:Li, C, Awital, B, Wong, S, Dreveny, I, Meijers, J, Emsley, J.
Deposit date:2021-12-28
Release date:2023-01-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.24 Å)
Cite:Plasma kallikrein structure reveals apple domain disc rotated conformation compared to factor XI.
J Thromb Haemost, 17, 2019
7QOX
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Factor XI and Plasma Kallikrein apple domain structures reveals different kininogen bound complexes
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, ...
Authors:Li, C, Awital, B, Wong, S, Dreveny, I, Meijers, J, Emsley, J.
Deposit date:2021-12-29
Release date:2023-01-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Plasma kallikrein structure reveals apple domain disc rotated conformation compared to factor XI.
J Thromb Haemost, 17, 2019
2XV2
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BU of 2xv2 by Molmil
Pseudomonas aeruginosa Azurin with mutated metal-binding loop sequence (CAAHAAM), chemically reduced, pH4.2
Descriptor: AZURIN, COPPER (I) ION
Authors:Li, C, Sato, K, Monari, S, Salard, I, Sola, M, Banfield, M.J, Dennison, C.
Deposit date:2010-10-22
Release date:2010-12-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Metal-Binding Loop Length is a Determinant of the Pka of a Histidine Ligand at a Type 1 Copper Site
Inorg.Chem., 50, 2011
2XV0
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BU of 2xv0 by Molmil
Pseudomonas aeruginosa Azurin with mutated metal-binding loop sequence (CAAHAAM), chemically reduced, pH4.8
Descriptor: AZURIN, COPPER (I) ION
Authors:Li, C, Sato, K, Monari, S, Salard, I, Sola, M, Banfield, M.J, Dennison, C.
Deposit date:2010-10-22
Release date:2010-12-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Metal-Binding Loop Length is a Determinant of the Pka of a Histidine Ligand at a Type 1 Copper Site
Inorg.Chem., 50, 2011
2XV3
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BU of 2xv3 by Molmil
Pseudomonas aeruginosa Azurin with mutated metal-binding loop sequence (CAAAAHAAAAM), chemically reduced, pH5.3
Descriptor: AZURIN, COPPER (I) ION
Authors:Li, C, Sato, K, Monari, S, Salard, I, Sola, M, Banfield, M.J, Dennison, C.
Deposit date:2010-10-22
Release date:2010-12-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Metal-Binding Loop Length is a Determinant of the Pka of a Histidine Ligand at a Type 1 Copper Site
Inorg.Chem., 50, 2011
3OWG
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BU of 3owg by Molmil
Crystal structure of vaccinia virus Polyadenylate polymerase(vp55)
Descriptor: Poly(A) polymerase catalytic subunit
Authors:Li, C, Li, H, Zhou, S, Gershon, P.D, Poulos, T.L.
Deposit date:2010-09-17
Release date:2011-09-21
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Domain-level rocking motion within a polymerase that translocates on single-stranded nucleic acid.
Acta Crystallogr.,Sect.D, 69, 2013
1Z2F
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BU of 1z2f by Molmil
solution structure of CfAFP-501
Descriptor: Antifreeze Protein Isoform 501
Authors:Li, C, Jin, C.
Deposit date:2005-03-08
Release date:2005-10-11
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution Structure of an Antifreeze Protein CfAFP-501 from Choristoneura fumiferana
J.Biomol.Nmr, 32, 2005
8YKV
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BU of 8ykv by Molmil
Cryo-EM structure of succinate receptor SUCR1 bound to compound 31
Descriptor: (2~{S})-2-[[6-[4-(trifluoromethyloxy)phenyl]pyridin-2-yl]carbonylamino]butanedioic acid, Antibody fragment ScFv16, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Li, C, Liu, H, Li, J, Zhu, H, Fu, W, Xu, H.E.
Deposit date:2024-03-05
Release date:2024-05-29
Method:ELECTRON MICROSCOPY (2.48 Å)
Cite:Cryo-EM structure of succinate receptor SUCR1 bound to compound 31
To Be Published
8YKW
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BU of 8ykw by Molmil
Cryo-EM structure of succinate receptor SUCR1 bound to succinic acid
Descriptor: Antibody fragment ScFv16, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Li, C, Liu, H, Li, J, Zhu, H, Fu, W, Xu, H.E.
Deposit date:2024-03-05
Release date:2024-05-29
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:Cryo-EM structure of succinate receptor SUCR1 bound to succinic acid
To Be Published
8YKX
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BU of 8ykx by Molmil
Cryo-EM structure of succinate receptor SUCR1 bound to maleic acid
Descriptor: Antibody fragment ScFv16, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Li, C, Liu, H, Li, J, Zhu, H, Fu, W, Xu, H.E.
Deposit date:2024-03-05
Release date:2024-05-29
Method:ELECTRON MICROSCOPY (2.69 Å)
Cite:Cryo-EM structure of succinate receptor SUCR1 bound to maleic acid
To Be Published
3ERC
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BU of 3erc by Molmil
Crystal structure of the heterodimeric vaccinia virus mRNA polyadenylate polymerase with three fragments of RNA and 3'-deoxy ATP
Descriptor: 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase, ...
Authors:Li, C, Li, H, Zhou, S, Poulos, T.L, Gershon, P.D.
Deposit date:2008-10-01
Release date:2009-06-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:Polymerase Translocation with Respect to Single-Stranded Nucleic Acid: Looping or Wrapping of Primer around a Poly(A) Polymerase
Structure, 17, 2009
3ER9
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BU of 3er9 by Molmil
Crystal structure of the heterodimeric vaccinia virus mRNA polyadenylate polymerase complex with UU and 3'-deoxy ATP
Descriptor: 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE, 5'-R(UP*U)-3', CALCIUM ION, ...
Authors:Li, C, Li, H, Zhou, S, Poulos, T.L, Gershon, P.D.
Deposit date:2008-10-01
Release date:2009-06-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Polymerase Translocation with Respect to Single-Stranded Nucleic Acid: Looping or Wrapping of Primer around a Poly(A) Polymerase
Structure, 17, 2009
3ER8
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BU of 3er8 by Molmil
Crystal structure of the heterodimeric vaccinia virus mRNA polyadenylate polymerase complex with two fragments of RNA
Descriptor: Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase, Poly(A) polymerase catalytic subunit, RNA/DNA chimera 5'-D(CP*CP*)R(UP*UP*)D(C)-3', ...
Authors:Li, C, Li, H, Zhou, S, Poulos, T.L, Gershon, P.D.
Deposit date:2008-10-01
Release date:2009-06-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.18 Å)
Cite:Polymerase Translocation with Respect to Single-Stranded Nucleic Acid: Looping or Wrapping of Primer around a Poly(A) Polymerase
Structure, 17, 2009
8EFC
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BU of 8efc by Molmil
Structure of Lates calcarifer DNA polymerase theta polymerase domain with long duplex DNA, complex Ia
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*AP*CP*TP*GP*TP*GP*AP*GP*GP*CP*AP*TP*CP*CP*GP*TP*AP*GP*(2DA))-3'), DNA (5'-D(*AP*GP*CP*TP*CP*TP*AP*CP*GP*GP*AP*TP*GP*CP*CP*TP*CP*AP*CP*AP*G)-3'), ...
Authors:Li, C, Zhu, H, Sun, J, Gao, Y.
Deposit date:2022-09-08
Release date:2022-12-14
Last modified:2023-02-01
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural basis of DNA polymerase theta mediated DNA end joining.
Nucleic Acids Res., 51, 2023
8EF9
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BU of 8ef9 by Molmil
Structure of Lates calcarifer DNA polymerase theta polymerase domain with long duplex DNA, complex Ia
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*AP*GP*CP*AP*TP*CP*CP*GP*TP*AP*GP*(2DA))-3'), DNA (5'-D(*AP*GP*CP*TP*CP*TP*AP*CP*GP*GP*AP*TP*GP*C)-3'), ...
Authors:Li, C, Zhu, H, Sun, J, Gao, Y.
Deposit date:2022-09-08
Release date:2022-12-14
Last modified:2023-02-01
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Structural basis of DNA polymerase theta mediated DNA end joining.
Nucleic Acids Res., 51, 2023
8EFK
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BU of 8efk by Molmil
Structure of Lates calcarifer DNA polymerase theta polymerase domain with hairpin DNA
Descriptor: 2',3'-dideoxyadenosine triphosphate, DNA (5'-D(P*TP*TP*TP*TP*GP*GP*CP*TP*TP*TP*TP*GP*CP*CP*(2DA))-3'), Lates calcarifer DNA polymerase theta, ...
Authors:Li, C, Zhu, H, Sun, J, Gao, Y.
Deposit date:2022-09-08
Release date:2022-12-14
Last modified:2023-02-01
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis of DNA polymerase theta mediated DNA end joining.
Nucleic Acids Res., 51, 2023
1KZZ
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BU of 1kzz by Molmil
DOWNSTREAM REGULATOR TANK BINDS TO THE CD40 RECOGNITION SITE ON TRAF3
Descriptor: TNF receptor associated factor 3, TRAF family member-associated NF-kappa-b activator
Authors:Li, C, Ni, C.-Z, Havert, M.L, Cabezas, E, He, J, Kaiser, D, Reed, J.C, Satterthwait, A.C, Cheng, G, Ely, K.R.
Deposit date:2002-02-08
Release date:2002-04-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Downstream regulator TANK binds to the CD40 recognition site on TRAF3.
Structure, 10, 2002
1L0A
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BU of 1l0a by Molmil
DOWNSTREAM REGULATOR TANK BINDS TO THE CD40 RECOGNITION SITE ON TRAF3
Descriptor: TNF receptor associated factor 3, TRAF family member-associated NF-kappa-b activator
Authors:Li, C, Ni, C.-Z, Havert, M.L, Cabezas, E, He, J, Kaiser, D, Reed, J.C, Satterthwait, A.C, Cheng, G, Ely, K.R.
Deposit date:2002-02-08
Release date:2002-04-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Downstream regulator TANK binds to the CD40 recognition site on TRAF3.
Structure, 10, 2002
3QDP
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BU of 3qdp by Molmil
Structural characterization of the interaction of colicin A, colicin N, and TolB with TolAIII translocon
Descriptor: NITRATE ION, Protein tolA
Authors:Li, C.
Deposit date:2011-01-19
Release date:2012-01-25
Last modified:2012-06-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural Evidence That Colicin A Protein Binds to a Novel Binding Site of TolA Protein in Escherichia coli Periplasm.
J.Biol.Chem., 287, 2012
3QDR
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BU of 3qdr by Molmil
Structural characterization of the interaction of colicin A, colicin N, and TolB with the TolAIII translocon
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Colicin-A, Protein tolA
Authors:Li, C.
Deposit date:2011-01-19
Release date:2012-01-25
Last modified:2012-06-20
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural Evidence That Colicin A Protein Binds to a Novel Binding Site of TolA Protein in Escherichia coli Periplasm.
J.Biol.Chem., 287, 2012
1RKR
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BU of 1rkr by Molmil
CRYSTAL STRUCTURE OF AZURIN-I FROM ALCALIGENES XYLOSOXIDANS NCIMB 11015
Descriptor: AZURIN-I, COPPER (II) ION
Authors:Li, C, Inoue, T, Gotowda, M, Suzuki, S, Yamaguchi, K, Kataoka, K, Kai, Y.
Deposit date:1997-05-17
Release date:1998-05-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structure of azurin I from the denitrifying bacterium Alcaligenes xylosoxidans NCIMB 11015 at 2.45 A resolution.
Acta Crystallogr.,Sect.D, 54, 1998
1XCX
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BU of 1xcx by Molmil
Acarbose Rearrangement Mechanism Implied by the Kinetic and Structural Analysis of Human Pancreatic alpha-Amylase in Complex with Analogues and Their Elongated Counterparts
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-6)-beta-D-glucopyranose, Alpha-amylase, ...
Authors:Li, C, Begum, A, Numao, S, Park, K.H, Withers, S.G, Brayer, G.D.
Deposit date:2004-09-03
Release date:2004-12-07
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Acarbose Rearrangement Mechanism Implied by the Kinetic and Structural Analysis of Human Pancreatic alpha-Amylase in Complex with Analogues and Their Elongated Counterparts
Biochemistry, 44, 2005
1RF3
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BU of 1rf3 by Molmil
Structurally Distinct Recognition Motifs in Lymphotoxin-B Receptor and CD40 for TRAF-mediated Signaling
Descriptor: 24-residue peptide from Lymphotoxin-B Receptor, TNF receptor associated factor 3
Authors:Li, C, Norris, P.S, Ni, C.Z, Havert, M.L, Chiong, E.M, Tran, B.R, Cabezas, E, Cheng, G, Reed, J.C, Satterthwait, A.C, Ware, C.F, Ely, K.R.
Deposit date:2003-11-07
Release date:2004-07-06
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structurally distinct recognition motifs in lymphotoxin-beta receptor and CD40 for tumor necrosis factor receptor-associated factor (TRAF)-mediated signaling.
J.Biol.Chem., 278, 2003

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