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PDB: 404 results

6HRK
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Structure of a far-red fluorescent biliprotein derived from a far-red induced allophycocyanin F subunit from a thermophilic cyanobacterium Chroococcidiopsis thermalis
Descriptor: Allophycocyanin beta-18 subunit apoprotein, BILIVERDINE IX ALPHA
Authors:Hou, Y.-N, Hoeppner, A, Ding, W.-L, Gaertner, W, Zhao, K.-H.
Deposit date:2018-09-27
Release date:2019-10-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Control of a far-red/near-infrared spectral switch in an artificial fluorescent biliprotein derived from allophycocyanin
Protein Sci., Suppl.: Diskette Appendix To V. , No. , [Month], Filename:, 31, 2022
7WR0
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BU of 7wr0 by Molmil
P32 of caspase-4 C258A mutant
Descriptor: Caspase-4
Authors:Hou, Y.J, Zeng, H, Shao, F, Ding, J.
Deposit date:2022-01-26
Release date:2023-01-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural mechanisms of calmodulin activation of Shigella effector OspC3 to ADP-riboxanate caspase-4/11 and block pyroptosis.
Nat.Struct.Mol.Biol., 30, 2023
7WR4
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Crystal structure of OspC3-calmodulin-caspase-4 complex
Descriptor: Calmodulin-1, Caspase-4, OspC3
Authors:Hou, Y.J, Zeng, H, Shao, F, Ding, J.
Deposit date:2022-01-26
Release date:2023-01-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural mechanisms of calmodulin activation of Shigella effector OspC3 to ADP-riboxanate caspase-4/11 and block pyroptosis.
Nat.Struct.Mol.Biol., 30, 2023
7WR2
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BU of 7wr2 by Molmil
Cryatal structure of OspC3 C-terminal ankyrin-repeat domain
Descriptor: OspC3
Authors:Hou, Y.J, Zeng, H, Shao, F, Ding, J.
Deposit date:2022-01-26
Release date:2023-01-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structural mechanisms of calmodulin activation of Shigella effector OspC3 to ADP-riboxanate caspase-4/11 and block pyroptosis.
Nat.Struct.Mol.Biol., 30, 2023
7WR1
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BU of 7wr1 by Molmil
P32 of caspase-4 C258A mutant in complex with OspC3 C-terminal ankyrin-repeat domain
Descriptor: Caspase-4, OspC3
Authors:Hou, Y.J, Zeng, H, Shao, F, Ding, J.
Deposit date:2022-01-26
Release date:2023-01-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Structural mechanisms of calmodulin activation of Shigella effector OspC3 to ADP-riboxanate caspase-4/11 and block pyroptosis.
Nat.Struct.Mol.Biol., 30, 2023
7WR6
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BU of 7wr6 by Molmil
Crystal structure of ADP-riboxanated caspase-4 in complex with Af1521
Descriptor: ADP-ribose glycohydrolase AF_1521, Caspase-4, [[(3~{a}~{S},5~{R},6~{R},6~{a}~{R})-2-azanylidene-3-[(4~{R})-4-azanyl-5-oxidanylidene-pentyl]-6-oxidanyl-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3]oxazol-5-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate
Authors:Hou, Y.J, Zeng, H, Shao, F, Ding, J.
Deposit date:2022-01-26
Release date:2023-01-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structural mechanisms of calmodulin activation of Shigella effector OspC3 to ADP-riboxanate caspase-4/11 and block pyroptosis.
Nat.Struct.Mol.Biol., 30, 2023
7WR3
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BU of 7wr3 by Molmil
Crystal structure of MBP-fused OspC3 in complex with calmodulin
Descriptor: Calmodulin-1, MBP-fused OspC3, NICOTINAMIDE, ...
Authors:Hou, Y.J, Zeng, H, Shao, F, Ding, J.
Deposit date:2022-01-26
Release date:2023-01-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural mechanisms of calmodulin activation of Shigella effector OspC3 to ADP-riboxanate caspase-4/11 and block pyroptosis.
Nat.Struct.Mol.Biol., 30, 2023
7WR5
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BU of 7wr5 by Molmil
Crystal structure of OspC3-calmodulin-caspase-4 complex binding with 2'-aF-NAD+
Descriptor: Calmodulin-1, Caspase-4, OspC3, ...
Authors:Hou, Y.J, Zeng, H, Shao, F, Ding, J.
Deposit date:2022-01-26
Release date:2023-01-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural mechanisms of calmodulin activation of Shigella effector OspC3 to ADP-riboxanate caspase-4/11 and block pyroptosis.
Nat.Struct.Mol.Biol., 30, 2023
6J4C
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BU of 6j4c by Molmil
Crystal structure of MarH, an epimerase for biosynthesis of Maremycins in Streptomyces, under 10 mM ZnSO4
Descriptor: ACETIC ACID, Cupin superfamily protein, GLYCEROL, ...
Authors:Hou, Y, Liu, B, Hu, K, Zhang, R.
Deposit date:2019-01-08
Release date:2020-01-15
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Structural basis of the mechanism of beta-methyl epimerization by enzyme MarH.
Org.Biomol.Chem., 17, 2019
6J4B
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BU of 6j4b by Molmil
Crystal structure of MarH, an epimerase for biosynthesis of Maremycins in Streptomyces, under 400 mM Zinc acetate
Descriptor: ACETIC ACID, Cupin superfamily protein, GLYCEROL, ...
Authors:Hou, Y, Liu, B, Hu, K, Zhang, R.
Deposit date:2019-01-08
Release date:2020-01-15
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Structural basis of the mechanism of beta-methyl epimerization by enzyme MarH.
Org.Biomol.Chem., 17, 2019
8JYW
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BU of 8jyw by Molmil
Cryo-EM structure of the gasdermin pore from Trichoplax adhaerens
Descriptor: Gasdermin pore forming domain-containing protein
Authors:Hou, Y.J, Sun, Q, Zeng, H, Ding, J.
Deposit date:2023-07-04
Release date:2024-05-01
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cleavage-independent activation of ancient eukaryotic gasdermins and structural mechanisms
Science, 2024
6J4D
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BU of 6j4d by Molmil
Crystal structure of MarH, an epimerase for biosynthesis of Maremycins in Streptomyces, under pH 4.7, without Zn
Descriptor: CITRATE ANION, Cupin superfamily protein, GLYCEROL
Authors:Hou, Y, Liu, B, Hu, K, Zhang, R.
Deposit date:2019-01-08
Release date:2020-01-15
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural Basis for the Isomerization Mechanism of MarH
To Be Published
8JYZ
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BU of 8jyz by Molmil
Cryo-EM structure of RCD-1 pore from Neurospora crassa
Descriptor: Gasdermin-like protein rcd-1-1, Gasdermin-like protein rcd-1-2
Authors:Hou, Y.J, Sun, Q, Li, Y, Ding, J.
Deposit date:2023-07-04
Release date:2024-05-01
Method:ELECTRON MICROSCOPY (3.63 Å)
Cite:Cleavage-independent activation of ancient eukaryotic gasdermins and structural mechanisms
Science, 2024
8GTN
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BU of 8gtn by Molmil
Cryo-EM structure of the gasdermin B pore
Descriptor: Isoform 4 of Gasdermin-B
Authors:Hou, Y.J, Cheng, H, Ding, J.
Deposit date:2022-09-08
Release date:2023-04-12
Last modified:2023-05-03
Method:ELECTRON MICROSCOPY (3.17 Å)
Cite:Structural mechanisms for regulation of GSDMB pore-forming activity.
Nature, 616, 2023
5Y6G
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BU of 5y6g by Molmil
PilZ domain with c-di-GMP of YcgR from Escherichia coli
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Flagellar brake protein YcgR, SULFATE ION
Authors:Hou, Y.J, Wang, D.C, Li, D.F.
Deposit date:2017-08-11
Release date:2018-07-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural insights into the mechanism of c-di-GMP-bound YcgR regulating flagellar motility inEscherichia coli.
J.Biol.Chem., 295, 2020
5Y6H
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BU of 5y6h by Molmil
Crystal structure of YcgR-N domain of YcgR from Escherichia coli
Descriptor: Flagellar brake protein YcgR
Authors:Hou, Y.J, Yang, W.S, Wang, D.C, Li, D.F.
Deposit date:2017-08-11
Release date:2018-07-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.774 Å)
Cite:Structural insights into the mechanism of c-di-GMP-bound YcgR regulating flagellar motility inEscherichia coli.
J.Biol.Chem., 295, 2020
5Y6F
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BU of 5y6f by Molmil
Crystal structure of YcgR in complex with c-di-GMP from Escherichia coli
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Flagellar brake protein YcgR, SULFATE ION
Authors:Hou, Y.J, Wang, D.C, Li, D.F.
Deposit date:2017-08-11
Release date:2018-07-18
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural insights into the mechanism of c-di-GMP-bound YcgR regulating flagellar motility inEscherichia coli.
J.Biol.Chem., 295, 2020
3W53
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BU of 3w53 by Molmil
Crystal structure of psychrophilic beta-glucosidase BglU from Micrococcus antarcticus
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-glucosidase
Authors:Hou, Y.J, Miao, L.L, Li, D.F, Liu, Z.P.
Deposit date:2013-01-18
Release date:2014-01-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and biochemical identification of key factors responsible for cold adaptation of Micrococcus antarcticus beta-glucosidase BglU
To be Published
5VKV
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BU of 5vkv by Molmil
Solution NMR structure of the membrane electron transporter CcdA
Descriptor: Cytochrome c-type biogenesis protein CcdA
Authors:Zhou, Y, Bushweller, J.H.
Deposit date:2017-04-24
Release date:2018-01-31
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure and elevator mechanism of the membrane electron transporter CcdA.
Nat. Struct. Mol. Biol., 25, 2018
3BQ3
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BU of 3bq3 by Molmil
Crystal structure of S. cerevisiae Dcn1
Descriptor: Defective in cullin neddylation protein 1, GLYCEROL
Authors:Chou, Y.C, Sicheri, F.
Deposit date:2007-12-19
Release date:2008-01-29
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Dcn1 Functions as a Scaffold-Type E3 Ligase for Cullin Neddylation.
Mol.Cell, 29, 2008
3U3D
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BU of 3u3d by Molmil
Plasmodium falciparum Sir2A preferentially hydrolyzes medium and long chain fatty acyl lysine
Descriptor: GLYCEROL, Transcriptional regulatory protein sir2 homologue, ZINC ION, ...
Authors:Zhou, Y, Hao, Q.
Deposit date:2011-10-05
Release date:2011-11-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Plasmodium falciparum Sir2A Preferentially Hydrolyzes Medium and Long Chain Fatty Acyl Lysine
Acs Chem.Biol., 2011
4F4U
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BU of 4f4u by Molmil
The bicyclic intermediate structure provides insights into the desuccinylation mechanism of SIRT5
Descriptor: NAD-dependent lysine demalonylase and desuccinylase sirtuin-5, mitochondrial, ZINC ION, ...
Authors:Zhou, Y, Hao, Q.
Deposit date:2012-05-11
Release date:2012-06-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Bicyclic Intermediate Structure Provides Insights into the Desuccinylation Mechanism of Human Sirtuin 5 (SIRT5)
J.Biol.Chem., 287, 2012
6UI4
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BU of 6ui4 by Molmil
Crystal structure of phenamacril-bound F. graminearum myosin I
Descriptor: Calmodulin, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Zhou, Y, Zhou, X.E, Gong, Y, Zhu, Y, Xu, H.E, Zhou, M, Melcher, K, Zhang, F.
Deposit date:2019-09-30
Release date:2020-03-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural basis of Fusarium myosin I inhibition by phenamacril.
Plos Pathog., 16, 2020
8CYS
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BU of 8cys by Molmil
CryoEM structures of amplified alpha-synuclein fibril class B type II with extended core from DLB case I
Descriptor: Alpha-synuclein
Authors:Zhou, Y, Sokratian, A, Xu, E, Viverette, E, Dillard, L, Yuan, Y, Li, J.Y, Matarangas, A, Bouvette, J, Borgnia, M, Bartesaghi, A, West, A.
Deposit date:2022-05-24
Release date:2023-05-31
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural and functional landscape of alpha-synuclein fibril assemblies amplified from cerebrospinal fluid
To Be Published
8CZ2
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BU of 8cz2 by Molmil
CryoEM structure of amplified alpha-synuclein fibril class A type I with extended core from DLB case VII
Descriptor: Alpha-synuclein
Authors:Zhou, Y, Sokratian, A, Xu, E, Viverette, E, Dillard, L, Yuan, Y, Li, J.Y, Matarangas, A, Bouvette, J, Borgnia, M, Bartesaghi, A, West, A.
Deposit date:2022-05-24
Release date:2023-05-31
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural and functional landscape of alpha-synuclein fibril assemblies amplified from cerebrospinal fluid
To Be Published

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