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PDB: 19 results

4RG8
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BU of 4rg8 by Molmil
Structural and biochemical studies of a moderately thermophilic Exonuclease I from Methylocaldum szegediense
Descriptor: Exonuclease I, MAGNESIUM ION
Authors:Fei, L, Tian, S, Moysey, R, Misca, M, Barker, J.J, Smith, M.A, McEwan, P.A, Pilka, E.S, Crawley, L, Evans, T, Sun, D.
Deposit date:2014-09-29
Release date:2015-02-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Structural and Biochemical Studies of a Moderately Thermophilic Exonuclease I from Methylocaldum szegediense.
Plos One, 10, 2015
5D3D
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BU of 5d3d by Molmil
Crystal structure of Staphylococcal Superantigen-Like protein 3
Descriptor: CHLORIDE ION, GLYCEROL, SODIUM ION, ...
Authors:Feitsma, L.J, Huizinga, E.G.
Deposit date:2015-08-06
Release date:2015-08-19
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structural basis for inhibition of TLR2 by staphylococcal superantigen-like protein 3 (SSL3).
Proc.Natl.Acad.Sci.USA, 112, 2015
5D3I
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Crystal structure of the SSL3-TLR2 complex
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Feitsma, L.J, Huizinga, E.G.
Deposit date:2015-08-06
Release date:2015-08-19
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis for inhibition of TLR2 by staphylococcal superantigen-like protein 3 (SSL3).
Proc.Natl.Acad.Sci.USA, 112, 2015
8EVG
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162bp CX3CR1 nucleosome (further classified with better nucleosome end)
Descriptor: DNA (162-MER), Histone H2A type 2-C, Histone H2B type 2-E, ...
Authors:Tengfei, L, Ruifang, G, Yawen, B.
Deposit date:2022-10-20
Release date:2023-11-01
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:Structural basis of cooperative targeting of the CX3CR1 nucleosome
To Be Published
7X3T
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BU of 7x3t by Molmil
Cryo-EM structure of ISW1a-dinucleosome
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA (343-MER), ...
Authors:Lifei, L, Kangjing, C, Chen, Z.
Deposit date:2022-03-01
Release date:2023-09-20
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (5.4 Å)
Cite:Structure of the ISW1a complex bound to the dinucleosome.
Nat.Struct.Mol.Biol., 31, 2024
7X3W
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Cryo-EM structure of ISW1-N1 nucleosome
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA (146-MER), ...
Authors:Lifei, L, Kangjing, C, Chen, Z.
Deposit date:2022-03-01
Release date:2023-09-20
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structure of the ISW1a complex bound to the dinucleosome.
Nat.Struct.Mol.Biol., 31, 2024
5OU8
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BU of 5ou8 by Molmil
Crystal structure of Glycoprotein VI in complex with collagen-peptide (GPO)5
Descriptor: (GPO)5, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
Authors:Feitsma, L.J, Huizinga, E.G.
Deposit date:2017-08-23
Release date:2018-09-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into collagen binding by platelet receptor glycoprotein VI.
Blood, 139, 2022
5NQH
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BU of 5nqh by Molmil
Structure of the human Fe65-PTB2 homodimer
Descriptor: Amyloid beta A4 precursor protein-binding family B member 1, GLYCEROL, SULFATE ION
Authors:Feilen, L.P, Haubrich, K, Sinning, I, Konietzko, U, Kins, S, Simon, B, Wild, K.
Deposit date:2017-04-20
Release date:2017-05-03
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Fe65-PTB2 Dimerization Mimics Fe65-APP Interaction.
Front Mol Neurosci, 10, 2017
7U0I
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BU of 7u0i by Molmil
Structure of LIN28b nucleosome bound 2 OCT4
Descriptor: DNA (162-MER), Histone H2A type 2-C, Histone H2B type 2-E, ...
Authors:Tengfei, L, Guan, R, Bai, Y.
Deposit date:2022-02-18
Release date:2023-06-28
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structural mechanism of LIN28B nucleosome targeting by OCT4.
Mol.Cell, 83, 2023
5OU9
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BU of 5ou9 by Molmil
Crystal structure of Glycoprotein VI in complex with collagen-peptide (GPO)3
Descriptor: (GPO)3, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
Authors:Feitsma, L.J, Huizinga, E.G.
Deposit date:2017-08-23
Release date:2018-09-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insights into collagen-binding by platelet receptor Glycoprotein VI
To be Published
5OU7
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BU of 5ou7 by Molmil
Crystal structure of the Glycoprotein VI loop truncation mutant PAVS-PAPYKN
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
Authors:Feitsma, L.J, Huizinga, E.G.
Deposit date:2017-08-23
Release date:2018-09-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insights into collagen-binding by platelet receptor Glycoprotein VI
To Be Published
7X3X
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BU of 7x3x by Molmil
Cryo-EM structure of N1 nucleosome-RA
Descriptor: DNA (146-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Lifei, L, Kangjing, C, Chen, Z.
Deposit date:2022-03-01
Release date:2023-09-20
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure of the ISW1a complex bound to the dinucleosome.
Nat.Struct.Mol.Biol., 31, 2024
7X3V
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BU of 7x3v by Molmil
Cryo-EM structure of IOC3-N2 nucleosome
Descriptor: DNA (146-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Lifei, L, Kangjing, C, Chen, Z.
Deposit date:2022-03-01
Release date:2023-09-20
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (3.09 Å)
Cite:Structure of the ISW1a complex bound to the dinucleosome.
Nat.Struct.Mol.Biol., 31, 2024
2QE4
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BU of 2qe4 by Molmil
Estrogen receptor alpha ligand-binding domain in complex with a benzopyran agonist
Descriptor: (3AS,4R,9BR)-4-(4-HYDROXYPHENYL)-6-(METHOXYMETHYL)-1,2,3,3A,4,9B-HEXAHYDROCYCLOPENTA[C]CHROMEN-8-OL, Estrogen receptor
Authors:Norman, B.H, Richardson, T.I, Dodge, J.A, Pfeifer, L.A, Durst, G.L, Wang, Y, Durbin, J.D, Krishnan, V, Dinn, S.R, Liu, S.Q, Reilly, J.E, Ryter, K.T.
Deposit date:2007-06-22
Release date:2007-09-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Benzopyrans as selective estrogen receptor beta agonists (SERBAs). Part 4: Functionalization of the benzopyran A-ring.
Bioorg.Med.Chem.Lett., 17, 2007
5N11
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BU of 5n11 by Molmil
Crystal structure of Human beta1-coronavirus OC43 NL/A/2005 Hemagglutinin-Esterase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETIC ACID, ...
Authors:Bakkers, M.J.G, Feitsma, L.J, de Groot, R.J, Huizinga, E.G.
Deposit date:2017-02-04
Release date:2017-03-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Betacoronavirus Adaptation to Humans Involved Progressive Loss of Hemagglutinin-Esterase Lectin Activity.
Cell Host Microbe, 21, 2017
5JIL
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BU of 5jil by Molmil
Crystal structure of rat coronavirus strain New-Jersey Hemagglutinin-Esterase in complex with 4N-acetyl sialic acid
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin-esterase, ...
Authors:Bakkers, M.J.G, Feitsma, L.J, de Groot, R.J, Huizinga, E.G.
Deposit date:2016-04-22
Release date:2016-05-11
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Coronavirus receptor switch explained from the stereochemistry of protein-carbohydrate interactions and a single mutation.
Proc.Natl.Acad.Sci.USA, 113, 2016
5JIF
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BU of 5jif by Molmil
Crystal structure of mouse hepatitis virus strain DVIM Hemagglutinin-Esterase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
Authors:Zeng, Q.H, Bakkers, M.J.G, Feitsma, L.J, de Groot, R.J, Huizinga, E.G.
Deposit date:2016-04-22
Release date:2016-05-11
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Coronavirus receptor switch explained from the stereochemistry of protein-carbohydrate interactions and a single mutation.
Proc.Natl.Acad.Sci.USA, 113, 2016
4ZXN
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BU of 4zxn by Molmil
Crystal structure of rat coronavirus strain New-Jersey Hemagglutinin-Esterase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, HE protein, SODIUM ION, ...
Authors:Bakkers, M.J.G, Feitsma, L.J, Huizinga, E.G, de Groot, R.J.
Deposit date:2015-05-20
Release date:2016-05-11
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of murine coronavirus hemagglutinin-esterases reveal structural basis for esterase substrate specificity
To Be Published
2JJ3
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BU of 2jj3 by Molmil
Estrogen receptor beta ligand binding domain in complex with a Benzopyran agonist
Descriptor: (3AS,4R,9BR)-4-(4-HYDROXYPHENYL)-6-(METHOXYMETHYL)-1,2,3,3A,4,9B-HEXAHYDROCYCLOPENTA[C]CHROMEN-8-OL, ESTROGEN RECEPTOR BETA
Authors:Norman, B.H, Richardson, T.I, Dodge, J.A, Pfeifer, L.A, Durst, G.L, Wang, Y, Durbin, J.D, Krishnan, V, Dinn, S.R, Liu, S, Reilly, J.E, Ryter, K.T.
Deposit date:2007-07-03
Release date:2007-08-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Benzopyrans as Selective Estrogen Receptor Beta Agonists (Serbas). Part 4: Functionalization of the Benzopyran A-Ring.
Bioorg.Med.Chem.Lett., 17, 2007

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