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PDB: 52 results

7YXX
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BU of 7yxx by Molmil
Cryo-EM structure of USP9X
Descriptor: Probable ubiquitin carboxyl-terminal hydrolase FAF-X
Authors:Deme, J.C, Halabelian, L, Arrowsmith, C.H, Lea, S.M, Structural Genomics Consortium (SGC)
Deposit date:2022-02-16
Release date:2022-03-02
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structure of USP9X
To Be Published
7YXY
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BU of 7yxy by Molmil
Cryo-EM structure of USP9X, local refinement of monomer
Descriptor: Probable ubiquitin carboxyl-terminal hydrolase FAF-X
Authors:Deme, J.C, Halabelian, L, Arrowsmith, C.H, Lea, S.M, Structural Genomics Consortium (SGC)
Deposit date:2022-02-16
Release date:2022-03-02
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Cryo-EM structure of USP9X
To Be Published
6H3I
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BU of 6h3i by Molmil
Structural snapshots of the Type 9 protein translocon
Descriptor: Peptidyl-prolyl cis-trans isomerase, PorV, Protein involved in gliding motility SprA
Authors:Deme, J.C, Lea, S.M.
Deposit date:2018-07-18
Release date:2018-11-07
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Type 9 secretion system structures reveal a new protein transport mechanism.
Nature, 564, 2018
6H3J
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BU of 6h3j by Molmil
Structural snapshots of the Type 9 protein translocon Plug-complex
Descriptor: Peptidyl-prolyl cis-trans isomerase, Plug, Protein involved in gliding motility SprA
Authors:Deme, J.C, Lea, S.M.
Deposit date:2018-07-18
Release date:2018-11-07
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Type 9 secretion system structures reveal a new protein transport mechanism.
Nature, 564, 2018
8UCS
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BU of 8ucs by Molmil
Cryo-EM structure of the flagellar MotAB stator bound to FliG
Descriptor: Flagellar motor switch protein FliG, Motility protein A, OmpA family protein
Authors:Deme, J.C, Johnson, S, Lea, S.M.
Deposit date:2023-09-27
Release date:2024-01-24
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Structural basis of directional switching by the bacterial flagellum.
Nat Microbiol, 2024
7OXR
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BU of 7oxr by Molmil
Cryo-EM structure of yeast Sei1 with locking helix deletion
Descriptor: BJ4_G0032880.mRNA.1.CDS.1
Authors:Deme, J.C, Lea, S.M.
Deposit date:2021-06-22
Release date:2021-10-13
Last modified:2021-10-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Mechanism of lipid droplet formation by the yeast Sei1/Ldb16 Seipin complex.
Nat Commun, 12, 2021
7OXP
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BU of 7oxp by Molmil
Cryo-EM structure of yeast Sei1
Descriptor: BJ4_G0032880.mRNA.1.CDS.1,BJ4_G0032880.mRNA.1.CDS.1
Authors:Deme, J.C, Lea, S.M.
Deposit date:2021-06-22
Release date:2021-10-13
Last modified:2021-10-20
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Mechanism of lipid droplet formation by the yeast Sei1/Ldb16 Seipin complex.
Nat Commun, 12, 2021
8GL6
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BU of 8gl6 by Molmil
The Type 9 Secretion System in vitro assembled, RemA-CTD substrate bound complex
Descriptor: Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, Protein involved in gliding motility SprA, ...
Authors:Deme, J.C, Lea, S.M.
Deposit date:2023-03-21
Release date:2024-01-31
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:The Type 9 Secretion System caught in the act of transport
Nat Microbiol, 2024
8GLJ
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BU of 8glj by Molmil
The Type 9 Secretion System in vitro assembled, FspA-CTD substrate bound complex
Descriptor: Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, Por secretion system C-terminal sorting domain-containing protein, ...
Authors:Deme, J.C, Lea, S.M.
Deposit date:2023-03-22
Release date:2024-01-31
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:The Type 9 Secretion System caught in the act of transport
Nat Microbiol, 2024
8GLK
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BU of 8glk by Molmil
The Type 9 Secretion System dGldL peak II, NucA substrate bound complex
Descriptor: Endonuclease I, Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, ...
Authors:Deme, J.C, Lea, S.M.
Deposit date:2023-03-22
Release date:2024-01-31
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:The Type 9 Secretion System caught in the act of transport
Nat Microbiol, 2024
8GLN
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BU of 8gln by Molmil
The Type 9 Secretion System in vivo assembled, RemZ substrate bound complex - conformation 2
Descriptor: Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, Protein involved in gliding motility SprA, ...
Authors:Deme, J.C, Lea, S.M.
Deposit date:2023-03-22
Release date:2024-01-31
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:The Type 9 Secretion System caught in the act of transport
Nat Microbiol, 2024
8GLM
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BU of 8glm by Molmil
The Type 9 Secretion System in vivo assembled, RemZ substrate bound complex - conformation 1
Descriptor: Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, Protein involved in gliding motility SprA, ...
Authors:Deme, J.C, Lea, S.M.
Deposit date:2023-03-22
Release date:2024-01-31
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:The Type 9 Secretion System caught in the act of transport
Nat Microbiol, 2024
8GL8
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BU of 8gl8 by Molmil
The Type 9 Secretion System Extended Translocon - SprA-PorV-PPI-RemZ-SkpA-SprE complex
Descriptor: Lauryl Maltose Neopentyl Glycol, Peptidyl-prolyl cis-trans isomerase, Periplasmic chaperone for outer membrane proteins Skp, ...
Authors:Deme, J.C, Lea, S.M.
Deposit date:2023-03-21
Release date:2024-01-31
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:The Type 9 Secretion System caught in the act of transport
Nat Microbiol, 2024
7AKV
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BU of 7akv by Molmil
The cryo-EM structure of the Vag8-C1 inhibitor complex
Descriptor: Plasma protease C1 inhibitor, Vag8
Authors:Johnson, S, Lea, S.M, Deme, J.C, Furlong, E, Dhillon, A.
Deposit date:2020-10-02
Release date:2021-06-16
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Molecular Basis for Bordetella pertussis Interference with Complement, Coagulation, Fibrinolytic, and Contact Activation Systems: the Cryo-EM Structure of the Vag8-C1 Inhibitor Complex.
Mbio, 12, 2021
7BC6
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BU of 7bc6 by Molmil
Cryo-EM structure of the outward open proton coupled folate transporter at pH 7.5
Descriptor: Proton-coupled folate transporter, nanobody
Authors:Parker, J.L, Deme, J.C, Lea, S.M, Newstead, S.
Deposit date:2020-12-18
Release date:2021-05-12
Last modified:2021-08-11
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural basis of antifolate recognition and transport by PCFT.
Nature, 595, 2021
7BC7
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BU of 7bc7 by Molmil
Cryo-EM structure of the proton coupled folate transporter at pH 6.0 bound to pemetrexed
Descriptor: 2-{4-[2-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)-ETHYL]-BENZOYLAMINO}-PENTANEDIOIC ACID, Proton-coupled folate transporter, nanobody
Authors:Parker, J.L, Deme, J.C, Lea, S.M, Newstead, S.
Deposit date:2020-12-18
Release date:2021-05-12
Last modified:2021-08-11
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural basis of antifolate recognition and transport by PCFT.
Nature, 595, 2021
6TRE
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BU of 6tre by Molmil
Structure of the RBM3/collar region of the Salmonella flagella MS-ring protein FliF with 32-fold symmetry applied
Descriptor: Flagellar M-ring protein
Authors:Johnson, S, Fong, Y.H, Deme, J.C, Furlong, E.J, Kuhlen, L, Lea, S.M.
Deposit date:2019-12-18
Release date:2020-03-18
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of the bacterial flagellar rotor MS-ring: a minimum inventory/maximum diversity system.
To Be Published
8UOX
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BU of 8uox by Molmil
Cryo-EM structure of a Counterclockwise locked form of the Salmonella enterica Typhimurium flagellar C-ring, with C34 symmetry applied
Descriptor: Flagellar M-ring protein, Flagellar motor switch protein FliG, Flagellar motor switch protein FliM, ...
Authors:Johnson, S, Deme, J.C, Lea, S.M.
Deposit date:2023-10-20
Release date:2024-01-24
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structural basis of directional switching by the bacterial flagellum.
Nat Microbiol, 2024
8UMD
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BU of 8umd by Molmil
Cryo-EM structure of a single subunit of a Counterclockwise-locked form of the Salmonella enterica Typhimurium flagellar C-ring.
Descriptor: Flagellar M-ring protein, Flagellar motor switch protein FliG, Flagellar motor switch protein FliM, ...
Authors:Johnson, S, Deme, J.C, Lea, S.M.
Deposit date:2023-10-17
Release date:2024-01-24
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis of directional switching by the bacterial flagellum.
Nat Microbiol, 2024
8UMX
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BU of 8umx by Molmil
Cryo-EM structure of a single subunit of a Clockwise-locked form of the Salmonella enterica Typhimurium flagellar C-ring.
Descriptor: Flagellar M-ring protein, Flagellar motor switch protein FliG, Flagellar motor switch protein FliM, ...
Authors:Johnson, S, Deme, J.C, Lea, S.M.
Deposit date:2023-10-18
Release date:2024-01-24
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural basis of directional switching by the bacterial flagellum.
Nat Microbiol, 2024
8FY3
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BU of 8fy3 by Molmil
Structure of NOT1:NOT10:NOT11 module of the human CCR4-NOT complex
Descriptor: CCR4-NOT transcription complex subunit 1, CCR4-NOT transcription complex subunit 10, CCR4-NOT transcription complex subunit 11
Authors:Lea, S.M, Deme, J.C, Raisch, T, Pekovic, F, Valkov, E.
Deposit date:2023-01-25
Release date:2023-07-26
Last modified:2023-08-02
Method:ELECTRON MICROSCOPY (2.88 Å)
Cite:Structure and assembly of the NOT10:11 module of the CCR4-NOT complex.
Commun Biol, 6, 2023
8FY4
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BU of 8fy4 by Molmil
Structure of NOT1:NOT10:NOT11 module of the chicken CCR4-NOT complex
Descriptor: CCR4-NOT transcription complex subunit 1, CCR4-NOT transcription complex subunit 10, CCR4-NOT transcription complex subunit 11
Authors:Lea, S.M, Deme, J.C, Raisch, T, Levdansky, Y, Valkov, E.
Deposit date:2023-01-25
Release date:2023-08-30
Method:ELECTRON MICROSCOPY (2.57 Å)
Cite:Structure and assembly of the NOT10:11 module of the CCR4-NOT complex.
Commun Biol, 6, 2023
7P9V
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BU of 7p9v by Molmil
Cryo EM structure of System XC-
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4F2 cell-surface antigen heavy chain, Cystine/glutamate transporter
Authors:Parker, J.L, Deme, J.C, Lea, S.M, Newstead, S.
Deposit date:2021-07-28
Release date:2021-11-17
Last modified:2022-02-02
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Molecular basis for redox control by the human cystine/glutamate antiporter system xc .
Nat Commun, 12, 2021
7P9U
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BU of 7p9u by Molmil
Cryo EM structure of System XC- in complex with glutamate
Descriptor: 4F2 cell-surface antigen heavy chain, Cystine/glutamate transporter, GLUTAMIC ACID
Authors:Parker, J.L, Deme, J.C, Lea, S.M, Newstead, S.
Deposit date:2021-07-28
Release date:2021-11-17
Last modified:2022-02-02
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Molecular basis for redox control by the human cystine/glutamate antiporter system xc .
Nat Commun, 12, 2021
6R6B
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BU of 6r6b by Molmil
Structure of the core Shigella flexneri type III secretion system export gate complex SctRST (Spa24/Spa9/Spa29).
Descriptor: Surface presentation of antigens protein SpaP, Surface presentation of antigens protein SpaQ, Surface presentation of antigens protein SpaR
Authors:Johnson, S, Kuhlen, L, Deme, J.C, Abrusci, P, Lea, S.M.
Deposit date:2019-03-26
Release date:2019-05-29
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:The Structure of an Injectisome Export Gate Demonstrates Conservation of Architecture in the Core Export Gate between Flagellar and Virulence Type III Secretion Systems.
Mbio, 10, 2019

 

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