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PDB: 57 results

2QUW
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BU of 2quw by Molmil
Hammerhead Ribozyme G12A mutant after cleavage
Descriptor: Hammerhead ribozyme, cleaved fragment, MAGNESIUM ION
Authors:Chi, Y.I, Scott, W.G, Kim, S.H.
Deposit date:2007-08-06
Release date:2008-07-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Capturing hammerhead ribozyme structures in action by modulating general base catalysis.
Plos Biol., 6, 2008
6CHT
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BU of 6cht by Molmil
HNF4alpha in complex with the corepressor EBP1 fragment
Descriptor: Hepatocyte nuclear factor 4-alpha, LAURIC ACID, Proliferation-associated protein 2G4
Authors:Chi, Y.I, Singh, P, Lee, I.K.
Deposit date:2018-02-22
Release date:2019-02-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.174 Å)
Cite:ErbB3-binding protein 1 (EBP1) represses HNF4 alpha-mediated transcription and insulin secretion in pancreatic beta-cells.
J.Biol.Chem., 294, 2019
4ZMS
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BU of 4zms by Molmil
Structure of the full-length response regulator spr1814 in complex with a phosphate analogue and B3C
Descriptor: 5-amino-2,4,6-tribromobenzene-1,3-diyl dihydroperoxide, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ...
Authors:Chi, Y.M, Park, A.
Deposit date:2015-05-04
Release date:2016-04-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural characterization of the full-length response regulator spr1814 in complex with a phosphate analogue reveals a novel conformational plasticity of the linker region
Biochem.Biophys.Res.Commun., 473, 2016
4ZMR
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Structural characterization of the full-length response regulator spr1814 in complex with a phosphate analogue reveals a novel conformational plasticity of the linker region
Descriptor: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Response regulator
Authors:Chi, Y.M, Park, A.
Deposit date:2015-05-04
Release date:2016-04-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structural characterization of the full-length response regulator spr1814 in complex with a phosphate analogue reveals a novel conformational plasticity of the linker region
Biochem.Biophys.Res.Commun., 473, 2016
4NQZ
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BU of 4nqz by Molmil
Crystal Structure of the Pseudomonas aeruginosa Enoyl-Acyl Carrier Protein Reductase (FabI) in apo form
Descriptor: Enoyl-[acyl-carrier-protein] reductase [NADH] FabI
Authors:Chi, Y.M, Lee, J.H, Park, A.K.
Deposit date:2013-11-26
Release date:2014-11-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.604 Å)
Cite:Crystal Structures of Pseudomonas aeruginosa Enoyl-ACP Reductase (FabI) in the Presence and Absence of NAD+ and Triclosan
Bull.Korean Chem.Soc., 36, 2015
4NR0
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BU of 4nr0 by Molmil
Crystal structure of the Pseudomonas aeruginosa Enoyl-Acyl Carrier Protein Reductase (FabI) in complex with NAD+ and triclosan
Descriptor: Enoyl-[acyl-carrier-protein] reductase [NADH] FabI, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, TRICLOSAN
Authors:Chi, Y.M, Lee, J.H, Park, A.K.
Deposit date:2013-11-26
Release date:2014-11-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.799 Å)
Cite:Crystal Structures of Pseudomonas aeruginosa Enoyl-ACP Reductase (FabI) in the Presence and Absence of NAD+ and Triclosan
Bull.Korean Chem.Soc., 36, 2015
4QIS
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BU of 4qis by Molmil
Crystal structure of Nitroalkane Oxidase from Pseudomonas aeruginosa
Descriptor: FLAVIN MONONUCLEOTIDE, Nitronate monooxygenase family protein
Authors:Chi, Y.M, Lee, J.H.
Deposit date:2014-06-02
Release date:2015-07-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.906 Å)
Cite:Crystal structures and reaction mechanisms of nitroalkane oxidase (NAO) from Pseudomonas aeruginosa
To be Published
4QIT
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BU of 4qit by Molmil
Crystal structure of Nitroalkane Oxidase from Pseudomonas aeruginosa in mutant complex form
Descriptor: FLAVIN MONONUCLEOTIDE, Nitronate monooxygenase family protein, nitroethane
Authors:Chi, Y.M, Lee, J.H.
Deposit date:2014-06-02
Release date:2015-07-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structures and reaction mechanisms of nitroalkane oxidase (NAO) from Pseudomonas aeruginosa
To be Published
4QIU
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BU of 4qiu by Molmil
Crystal structure of Nitroalkane Oxidase from Pseudomonas aeruginosa in Mutant complex form
Descriptor: 1-nitropropane, FLAVIN MONONUCLEOTIDE, Nitronate monooxygenase family protein
Authors:Chi, Y.M, Lee, J.H.
Deposit date:2014-06-02
Release date:2015-07-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.401 Å)
Cite:Crystal structures and reaction mechanisms of nitroalkane oxidase (NAO) from Pseudomonas aeruginosa
To be Published
1QVB
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BU of 1qvb by Molmil
CRYSTAL STRUCTURE OF THE BETA-GLYCOSIDASE FROM THE HYPERTHERMOPHILE THERMOSPHAERA AGGREGANS
Descriptor: BETA-GLYCOSIDASE
Authors:Chi, Y.-I, Martinez-Cruz, L.A, Swanson, R.V, Robertson, D.E, Kim, S.-H.
Deposit date:1999-07-07
Release date:1999-07-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the beta-glycosidase from the hyperthermophile Thermosphaera aggregans: insights into its activity and thermostability.
FEBS Lett., 445, 1999
2QUS
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BU of 2qus by Molmil
Hammerhead Ribozyme G12A mutant pre-cleavage
Descriptor: Hammerhead ribozyme, MAGNESIUM ION
Authors:Chi, Y.I, Scott, W.G, Kim, S.H.
Deposit date:2007-08-06
Release date:2008-07-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Capturing hammerhead ribozyme structures in action by modulating general base catalysis.
Plos Biol., 6, 2008
1IC8
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BU of 1ic8 by Molmil
HEPATOCYTE NUCLEAR FACTOR 1A BOUND TO DNA : MODY3 GENE PRODUCT
Descriptor: 5'-D(*CP*TP*TP*GP*GP*TP*TP*AP*AP*TP*AP*AP*TP*TP*CP*AP*CP*CP*AP*GP*A)-3', 5'-D(*TP*CP*TP*GP*GP*TP*GP*AP*AP*TP*TP*AP*TP*TP*AP*AP*CP*CP*AP*AP*G)-3', HEPATOCYTE NUCLEAR FACTOR 1-ALPHA
Authors:Chi, Y.-I, Frantz, J.D, Oh, B.-C, Hansen, L, Dhe-Paganon, S, Shoelson, S.E.
Deposit date:2001-03-30
Release date:2002-11-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Diabetes mutations delineate an atypical POU domains in HNF1-Alpha
Mol.Cell, 10, 2002
1CK1
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BU of 1ck1 by Molmil
STRUCTURE OF STAPHYLOCOCCAL ENTEROTOXIN C3
Descriptor: PROTEIN (ENTEROTOXIN TYPE C-3), ZINC ION
Authors:Chi, Y.-I, Bohach, G.A, Stauffacher, C.V.
Deposit date:1999-04-26
Release date:2002-07-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Zinc-mediated dimerization and its effect on activity and conformation of staphylococcal enterotoxin type C.
J.Biol.Chem., 277, 2002
1CFM
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BU of 1cfm by Molmil
CYTOCHROME F FROM CHLAMYDOMONAS REINHARDTII
Descriptor: CYTOCHROME F, PROTOPORPHYRIN IX CONTAINING FE
Authors:Chi, Y.I, Huang, L.S, Zhang, Z, Fernandez-Velasco, J.G, Malkin, R, Berry, E.A.
Deposit date:1998-09-18
Release date:1999-04-27
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray structure of a truncated form of cytochrome f from chlamydomonas reinhardtii.
Biochemistry, 39, 2000
3CBB
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BU of 3cbb by Molmil
Crystal Structure of Hepatocyte Nuclear Factor 4alpha in complex with DNA: Diabetes Gene Product
Descriptor: Hepatocyte Nuclear Factor 4-alpha promoter element DNA, Hepatocyte Nuclear Factor 4-alpha, DNA binding domain, ...
Authors:Lu, P, Rha, G.B, Melikishvili, M, Adkins, B.C, Fried, M.G, Chi, Y.I.
Deposit date:2008-02-21
Release date:2008-10-07
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of natural promoter recognition by a unique nuclear receptor, HNF4alpha. Diabetes gene product.
J.Biol.Chem., 283, 2008
4NAR
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BU of 4nar by Molmil
Crystal Structure of the Q9WYS3 protein from Thermotoga maritima. Northeast Structural Genomics Consortium Target VR152
Descriptor: ACETATE ION, Putative uronate isomerase, SULFATE ION
Authors:Vorobiev, S, Lew, S, Seetharaman, J, Chi, Y, Xiao, R, Maglaqui, M, Lee, D, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2013-10-22
Release date:2013-11-06
Method:X-RAY DIFFRACTION (2.388 Å)
Cite:Crystal Structure of the Q9WYS3 protein from Thermotoga maritima.
To be Published
2G04
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BU of 2g04 by Molmil
Crystal structure of fatty acid-CoA racemase from Mycobacterium tuberculosis H37Rv
Descriptor: PROBABLE FATTY-ACID-CoA RACEMASE FAR
Authors:Lee, K.S, Park, S.M, Rhee, K.H, Bang, W.G, Hwang, K.Y, Chi, Y.M.
Deposit date:2006-02-11
Release date:2007-01-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of fatty acid-CoA racemase from Mycobacterium tuberculosis H37Rv
Proteins, 64, 2006
3KSI
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BU of 3ksi by Molmil
structure of fRMsr of Staphylococcus aureus (complex with 2-propanol)
Descriptor: ISOPROPYL ALCOHOL, Putative uncharacterized protein, SULFATE ION
Authors:Bong, S.M, Chi, Y.M.
Deposit date:2009-11-23
Release date:2010-05-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:structure of fRMsr of Staphylococcus aureus
To be Published
3KSH
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BU of 3ksh by Molmil
Structure of fRMsr of Staphylococcus aureus (oxidized form)
Descriptor: Putative uncharacterized protein, SULFATE ION
Authors:Bong, S.M, Chi, Y.M.
Deposit date:2009-11-23
Release date:2010-05-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of fRMsr of Staphylococcus aureus
To be Published
3KSF
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BU of 3ksf by Molmil
structure of fRMsr of Staphylococcus aureus (reduced form)
Descriptor: DI(HYDROXYETHYL)ETHER, Putative uncharacterized protein
Authors:Bong, S.M, Chi, Y.M.
Deposit date:2009-11-23
Release date:2010-05-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:structure of fRMsr of Staphylococcus aureus
To be Published
3KSG
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BU of 3ksg by Molmil
structure of fRMsr of Staphylococcus aureus (complex with substrate)
Descriptor: METHIONINE SULFOXIDE, Putative uncharacterized protein
Authors:Bong, S.M, Chi, Y.M.
Deposit date:2009-11-23
Release date:2010-05-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of fRMsr of Staphylococcus aureus
To be published
4KZ2
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BU of 4kz2 by Molmil
Crystal Structure of phi29 pRNA 3WJ Core
Descriptor: MANGANESE (II) ION, phi29 pRNA 3WJ core RNA 16 mer, phi29 pRNA 3WJ core RNA 18 mer, ...
Authors:Zhang, H, Endrizzi, J.A, Shu, Y, Haque, F, Sauter, C, Guo, P, Chi, Y.-I.
Deposit date:2013-05-29
Release date:2013-10-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Crystal structure of 3WJ core revealing divalent ion-promoted thermostability and assembly of the Phi29 hexameric motor pRNA.
Rna, 19, 2013
6OH1
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BU of 6oh1 by Molmil
IgA1 Protease G5 domain structure
Descriptor: Immunoglobulin A1 protease
Authors:Eisenmesser, E.Z, Chi, Y.C, Paukovich, N, Redzic, J.S, Rahkola, J.T, Janoff, E.N.
Deposit date:2019-04-04
Release date:2020-02-26
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Streptococcus pneumoniae G5 domains bind different ligands.
Protein Sci., 28, 2019
5DUI
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BU of 5dui by Molmil
Identification of a new FoxO1 binding site that precludes CREB binding at the glucose-6-phosphatase catalytic subunit gene promoter
Descriptor: DNA (5'-D(*AP*TP*GP*AP*TP*TP*TP*AP*CP*GP*TP*AP*AP*AP*AP*TP*AP*GP*AP*AP*A)-3'), DNA (5'-D(*TP*TP*TP*TP*CP*TP*AP*TP*TP*TP*TP*AP*CP*GP*TP*AP*AP*AP*TP*CP*A)-3'), Forkhead box protein O1
Authors:Singh, P, Endrizzi, J.A, Chi, Y.-I.
Deposit date:2015-09-18
Release date:2016-09-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.306 Å)
Cite:Crystal structures reveal a new and novel FoxO1 binding site within the human glucose-6-phosphatase catalytic subunit 1 gene promoter.
J. Struct. Biol., 198, 2017
3FS1
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BU of 3fs1 by Molmil
Crystal structure of HNF4a LBD in complex with the ligand and the coactivator PGC-1a fragment
Descriptor: Hepatocyte nuclear factor 4-alpha, MYRISTIC ACID, PPARgamma Coactivator-1a (PGC-1a)
Authors:Rha, G, Wu, G, Chi, Y.
Deposit date:2009-01-08
Release date:2009-10-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Multiple binding modes between HNF4alpha and the LXXLL motifs of PGC-1alpha lead to full activation
J.Biol.Chem., 284, 2009

 

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