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PDB: 768 results

2QUS
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Hammerhead Ribozyme G12A mutant pre-cleavage
Descriptor: Hammerhead ribozyme, MAGNESIUM ION
Authors:Chi, Y.I, Scott, W.G, Kim, S.H.
Deposit date:2007-08-06
Release date:2008-07-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Capturing hammerhead ribozyme structures in action by modulating general base catalysis.
Plos Biol., 6, 2008
4NR0
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BU of 4nr0 by Molmil
Crystal structure of the Pseudomonas aeruginosa Enoyl-Acyl Carrier Protein Reductase (FabI) in complex with NAD+ and triclosan
Descriptor: Enoyl-[acyl-carrier-protein] reductase [NADH] FabI, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, TRICLOSAN
Authors:Chi, Y.M, Lee, J.H, Park, A.K.
Deposit date:2013-11-26
Release date:2014-11-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.799 Å)
Cite:Crystal Structures of Pseudomonas aeruginosa Enoyl-ACP Reductase (FabI) in the Presence and Absence of NAD+ and Triclosan
Bull.Korean Chem.Soc., 36, 2015
6CHT
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BU of 6cht by Molmil
HNF4alpha in complex with the corepressor EBP1 fragment
Descriptor: Hepatocyte nuclear factor 4-alpha, LAURIC ACID, Proliferation-associated protein 2G4
Authors:Chi, Y.I, Singh, P, Lee, I.K.
Deposit date:2018-02-22
Release date:2019-02-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.174 Å)
Cite:ErbB3-binding protein 1 (EBP1) represses HNF4 alpha-mediated transcription and insulin secretion in pancreatic beta-cells.
J.Biol.Chem., 294, 2019
4NQZ
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Crystal Structure of the Pseudomonas aeruginosa Enoyl-Acyl Carrier Protein Reductase (FabI) in apo form
Descriptor: Enoyl-[acyl-carrier-protein] reductase [NADH] FabI
Authors:Chi, Y.M, Lee, J.H, Park, A.K.
Deposit date:2013-11-26
Release date:2014-11-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.604 Å)
Cite:Crystal Structures of Pseudomonas aeruginosa Enoyl-ACP Reductase (FabI) in the Presence and Absence of NAD+ and Triclosan
Bull.Korean Chem.Soc., 36, 2015
1VEJ
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BU of 1vej by Molmil
Solution Structure of RSGI RUH-016, a UBA Domain from mouse cDNA
Descriptor: RIKEN cDNA 4931431F19
Authors:Higuchi, Y, Abe, T, Hirota, H, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-03-31
Release date:2005-05-31
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution Structure of RSGI RUH-016, a UBA Domain from mouse cDNA
To be Published
1IC8
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BU of 1ic8 by Molmil
HEPATOCYTE NUCLEAR FACTOR 1A BOUND TO DNA : MODY3 GENE PRODUCT
Descriptor: 5'-D(*CP*TP*TP*GP*GP*TP*TP*AP*AP*TP*AP*AP*TP*TP*CP*AP*CP*CP*AP*GP*A)-3', 5'-D(*TP*CP*TP*GP*GP*TP*GP*AP*AP*TP*TP*AP*TP*TP*AP*AP*CP*CP*AP*AP*G)-3', HEPATOCYTE NUCLEAR FACTOR 1-ALPHA
Authors:Chi, Y.-I, Frantz, J.D, Oh, B.-C, Hansen, L, Dhe-Paganon, S, Shoelson, S.E.
Deposit date:2001-03-30
Release date:2002-11-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Diabetes mutations delineate an atypical POU domains in HNF1-Alpha
Mol.Cell, 10, 2002
2QUW
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BU of 2quw by Molmil
Hammerhead Ribozyme G12A mutant after cleavage
Descriptor: Hammerhead ribozyme, cleaved fragment, MAGNESIUM ION
Authors:Chi, Y.I, Scott, W.G, Kim, S.H.
Deposit date:2007-08-06
Release date:2008-07-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Capturing hammerhead ribozyme structures in action by modulating general base catalysis.
Plos Biol., 6, 2008
1CK1
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BU of 1ck1 by Molmil
STRUCTURE OF STAPHYLOCOCCAL ENTEROTOXIN C3
Descriptor: PROTEIN (ENTEROTOXIN TYPE C-3), ZINC ION
Authors:Chi, Y.-I, Bohach, G.A, Stauffacher, C.V.
Deposit date:1999-04-26
Release date:2002-07-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Zinc-mediated dimerization and its effect on activity and conformation of staphylococcal enterotoxin type C.
J.Biol.Chem., 277, 2002
1CFM
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CYTOCHROME F FROM CHLAMYDOMONAS REINHARDTII
Descriptor: CYTOCHROME F, PROTOPORPHYRIN IX CONTAINING FE
Authors:Chi, Y.I, Huang, L.S, Zhang, Z, Fernandez-Velasco, J.G, Malkin, R, Berry, E.A.
Deposit date:1998-09-18
Release date:1999-04-27
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray structure of a truncated form of cytochrome f from chlamydomonas reinhardtii.
Biochemistry, 39, 2000
1QVB
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BU of 1qvb by Molmil
CRYSTAL STRUCTURE OF THE BETA-GLYCOSIDASE FROM THE HYPERTHERMOPHILE THERMOSPHAERA AGGREGANS
Descriptor: BETA-GLYCOSIDASE
Authors:Chi, Y.-I, Martinez-Cruz, L.A, Swanson, R.V, Robertson, D.E, Kim, S.-H.
Deposit date:1999-07-07
Release date:1999-07-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the beta-glycosidase from the hyperthermophile Thermosphaera aggregans: insights into its activity and thermostability.
FEBS Lett., 445, 1999
4ZMS
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BU of 4zms by Molmil
Structure of the full-length response regulator spr1814 in complex with a phosphate analogue and B3C
Descriptor: 5-amino-2,4,6-tribromobenzene-1,3-diyl dihydroperoxide, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ...
Authors:Chi, Y.M, Park, A.
Deposit date:2015-05-04
Release date:2016-04-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural characterization of the full-length response regulator spr1814 in complex with a phosphate analogue reveals a novel conformational plasticity of the linker region
Biochem.Biophys.Res.Commun., 473, 2016
4ZMR
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Structural characterization of the full-length response regulator spr1814 in complex with a phosphate analogue reveals a novel conformational plasticity of the linker region
Descriptor: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Response regulator
Authors:Chi, Y.M, Park, A.
Deposit date:2015-05-04
Release date:2016-04-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structural characterization of the full-length response regulator spr1814 in complex with a phosphate analogue reveals a novel conformational plasticity of the linker region
Biochem.Biophys.Res.Commun., 473, 2016
4QIS
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BU of 4qis by Molmil
Crystal structure of Nitroalkane Oxidase from Pseudomonas aeruginosa
Descriptor: FLAVIN MONONUCLEOTIDE, Nitronate monooxygenase family protein
Authors:Chi, Y.M, Lee, J.H.
Deposit date:2014-06-02
Release date:2015-07-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.906 Å)
Cite:Crystal structures and reaction mechanisms of nitroalkane oxidase (NAO) from Pseudomonas aeruginosa
To be Published
4QIT
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Crystal structure of Nitroalkane Oxidase from Pseudomonas aeruginosa in mutant complex form
Descriptor: FLAVIN MONONUCLEOTIDE, Nitronate monooxygenase family protein, nitroethane
Authors:Chi, Y.M, Lee, J.H.
Deposit date:2014-06-02
Release date:2015-07-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structures and reaction mechanisms of nitroalkane oxidase (NAO) from Pseudomonas aeruginosa
To be Published
4QIU
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Crystal structure of Nitroalkane Oxidase from Pseudomonas aeruginosa in Mutant complex form
Descriptor: 1-nitropropane, FLAVIN MONONUCLEOTIDE, Nitronate monooxygenase family protein
Authors:Chi, Y.M, Lee, J.H.
Deposit date:2014-06-02
Release date:2015-07-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.401 Å)
Cite:Crystal structures and reaction mechanisms of nitroalkane oxidase (NAO) from Pseudomonas aeruginosa
To be Published
7LVN
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BU of 7lvn by Molmil
Solution structure of tarantula toxin omega-Avsp1a
Descriptor: Omega-Avsp1a
Authors:Chin, Y.K.Y, Herzig, V, King, G.F.
Deposit date:2021-02-26
Release date:2022-03-02
Last modified:2023-10-11
Method:SOLUTION NMR
Cite:The Tarantula Toxin omega-Avsp1a Specifically Inhibits Human Ca V 3.1 and Ca V 3.3 via the Extracellular S3-S4 Loop of the Domain 1 Voltage-Sensor.
Biomedicines, 10, 2022
7C03
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BU of 7c03 by Molmil
Crystal structure of POLArISact(T57S), genetically encoded probe for fluorescent polarization
Descriptor: POLArISact(T57S)
Authors:Tomabechi, Y, Sakai, N, Shirouzu, M.
Deposit date:2020-04-30
Release date:2021-03-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:POLArIS, a versatile probe for molecular orientation, revealed actin filaments associated with microtubule asters in early embryos.
Proc.Natl.Acad.Sci.USA, 118, 2021
7R6P
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BU of 7r6p by Molmil
Solution structure of peptide toxin MIITX2-Mg1a from the venom of the Australian giant red bull ant Myrmecia gulosa
Descriptor: U-myrmeciitoxin(02)-Mg1a
Authors:Chin, Y.K, Eagle, D, Bankala, K, Robinson, S.D.
Deposit date:2021-06-23
Release date:2022-02-09
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:A peptide toxin in ant venom mimics vertebrate EGF-like hormones to cause long-lasting hypersensitivity in mammals.
Proc.Natl.Acad.Sci.USA, 119, 2022
4UBQ
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BU of 4ubq by Molmil
Crystal Structure of IMP-2 Metallo-beta-Lactamase from Acinetobacter spp.
Descriptor: ACETATE ION, Beta-lactamase, ZINC ION
Authors:Yamaguchi, Y, Matsueda, S, Matsunaga, K, Takashio, N, Toma-Fukai, S, Yamagata, Y, Shibata, N, Wachino, J, Shibayama, K, Arakawa, Y, Kurosaki, H.
Deposit date:2014-08-13
Release date:2014-12-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of IMP-2 metallo-beta-lactamase from Acinetobacter spp.: comparison of active-site loop structures between IMP-1 and IMP-2.
Biol.Pharm.Bull., 38, 2015
8JOR
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BU of 8jor by Molmil
Structure of an acyltransferase involved in mannosylerythritol lipid formation from Pseudozyma tsukubaensis in type A crystal
Descriptor: Acyltransferase, PENTAETHYLENE GLYCOL
Authors:Nakamichi, Y, Saika, A, Watanabe, M, Fujii, T, Morita, T.
Deposit date:2023-06-08
Release date:2024-04-17
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural identification of catalytic His158 of PtMAC2p from Pseudozyma tsukubaensis , an acyltransferase involved in mannosylerythritol lipids formation.
Front Bioeng Biotechnol, 11, 2023
8JOS
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BU of 8jos by Molmil
Structure of an acyltransferase involved in mannosylerythritol lipid formation from Pseudozyma tsukubaensis in type B crystal
Descriptor: Acyltransferase, CHLORIDE ION, TRIETHYLENE GLYCOL
Authors:Nakamichi, Y, Saika, A, Watanabe, M, Fujii, T, Morita, T.
Deposit date:2023-06-08
Release date:2024-04-17
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Structural identification of catalytic His158 of PtMAC2p from Pseudozyma tsukubaensis , an acyltransferase involved in mannosylerythritol lipids formation.
Front Bioeng Biotechnol, 11, 2023
6OHX
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BU of 6ohx by Molmil
Solution structure of scorpion Hottentotta jayakari venom toxin Hj1a
Descriptor: Venom toxin Hj1a
Authors:Chin, Y.K.-Y, Chow, C.Y, King, G.F.
Deposit date:2019-04-08
Release date:2020-02-12
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Venom Peptides with Dual Modulatory Activity on the Voltage-Gated Sodium Channel NaV1.1 Provide Novel Leads for Development of Antiepileptic Drugs.
Acs Pharmacol Transl Sci, 3, 2020
6OVJ
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NMR structure of truncated alpha conotoxin SII: Ile-SII(3-14)
Descriptor: Alpha-conotoxin S2
Authors:Chin, Y.K.-Y, Wilhelm, P, Alewood, P.F.
Deposit date:2019-05-08
Release date:2020-05-06
Last modified:2023-10-11
Method:SOLUTION NMR
Cite:Cysteine-Rich alpha-Conotoxin SII Displays Novel Interactions at the Muscle Nicotinic Acetylcholine Receptor.
Acs Chem Neurosci, 13, 2022
6OTB
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NMR structure of alpha conotoxin SII
Descriptor: Alpha-conotoxin S2
Authors:Chin, Y.K.-Y, Wilhelm, P, Alewood, P.F.
Deposit date:2019-05-02
Release date:2020-05-06
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural and Pharmacological Characterization of alpha-Conotoxin SII: The sole member of framework II
To Be Published
6A9K
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Crystal structure of the complex of the hydrolytic antibody Fab 9C10 with a transition-state analog
Descriptor: 5-[(2R,3R)-2-[2,2-bis(chloranyl)ethanoylamino]-3-(4-nitrophenyl)-3-[oxidanyl-[[4-[2,2,2-tris(fluoranyl)ethanoylamino]phenyl]methyl]phosphoryl]oxy-propoxy]-5-oxidanylidene-pentanoic acid, IMMUNOGLOBULIN 9C10 H CHAIN, IMMUNOGLOBULIN 9C10 L CHAIN
Authors:Tsuchiya, Y, Fujii, I, Tada, T, Yamaguchi, A, Tsumuraya, T, Kumon, A.
Deposit date:2018-07-13
Release date:2019-07-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the complex of the hydrolytic antibody Fab 9C10 with a transition-state analog
To Be Published

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