Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5TBX
DownloadVisualize
BU of 5tbx by Molmil
hnRNP A18 RNA Recognition Motif
Descriptor: ACETATE ION, Cold-inducible RNA-binding protein, NICKEL (II) ION
Authors:Coburn, K.M, Melville, Z, Aligholizadeh, E, Roth, B.M, Varney, K.M, Weber, D.J.
Deposit date:2016-09-13
Release date:2017-04-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.767 Å)
Cite:Crystal structure of the human heterogeneous ribonucleoprotein A18 RNA-recognition motif.
Acta Crystallogr F Struct Biol Commun, 73, 2017
1XYD
DownloadVisualize
BU of 1xyd by Molmil
NMR Solution Structure of Rat Zinc-Calcium-S100B, 20 Structures
Descriptor: CALCIUM ION, S-100 protein, beta chain, ...
Authors:Wilder, P.T, Varney, K.M, Weber, D.J.
Deposit date:2004-11-09
Release date:2005-06-07
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution Structure of Zinc- and Calcium-Bound Rat S100B as Determined by Nuclear Magnetic Resonance Spectroscopy
Biochemistry, 44, 2005
1ZFS
DownloadVisualize
BU of 1zfs by Molmil
Solution structure of S100A1 bound to calcium
Descriptor: CALCIUM ION, S-100 protein, alpha chain
Authors:Wright, N.T, Varney, K.M, Weber, D.J.
Deposit date:2005-04-20
Release date:2006-04-11
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The three-dimensional solution structure of Ca(2+)-bound S100A1 as determined by NMR spectroscopy
J.Mol.Biol., 353, 2006
2JVU
DownloadVisualize
BU of 2jvu by Molmil
Solution Structure of Dispersin from Enteroaggregative Escherichia coli
Descriptor: DISPERSIN
Authors:Velarde, J.J, Varney, K.M, Farfan, K, Dudley, D, Inman, J.G, Fletcher, J, Weber, D.J, Nataro, J.P.
Deposit date:2007-09-25
Release date:2008-02-12
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the novel dispersin protein of enteroaggregative Escherichia coli.
Mol.Microbiol., 66, 2007
2K2F
DownloadVisualize
BU of 2k2f by Molmil
Solution structure of Ca2+-S100A1-RyRP12
Descriptor: CALCIUM ION, Protein S100-A1, Ryanodine receptor 1 peptide
Authors:Wright, N.T, Varney, K.M, Weber, D.J.
Deposit date:2008-04-01
Release date:2008-07-29
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:S100A1 and Calmodulin Compete for the Same Binding Site on Ryanodine Receptor.
J.Biol.Chem., 283, 2008
2KBM
DownloadVisualize
BU of 2kbm by Molmil
Ca-S100A1 interacting with TRTK12
Descriptor: CALCIUM ION, F-actin-capping protein subunit alpha-2, Protein S100-A1
Authors:Wright, N.T, Varney, K.M, Cannon, B.R, Morgan, M, Weber, D.J.
Deposit date:2008-12-02
Release date:2009-02-10
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of Ca-S100A1-TRTK12
To be Published
2JUB
DownloadVisualize
BU of 2jub by Molmil
Solution structure of IPI*
Descriptor: Internal protein I
Authors:Rifat, D, Wright, N.T, Varney, K.M, Weber, D.J, Black, L.W.
Deposit date:2007-08-17
Release date:2007-12-11
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:Restriction endonuclease inhibitor IPI* of bacteriophage T4: a novel structure for a dedicated target.
J.Mol.Biol., 375, 2008
5DKQ
DownloadVisualize
BU of 5dkq by Molmil
Crystal Structure of Calcium-loaded S100B bound to SBi4214
Descriptor: 2,2'-[pentane-1,5-diylbis(oxybenzene-4,1-diyl)]di-1,4,5,6-tetrahydropyrimidine, CALCIUM ION, Protein S100-B
Authors:Cavalier, M.C, Ansari, M.I, Pierce, A.D, Wilder, P.T, McKnight, L.E, Raman, E.P, Neau, D.B, Bezawada, P, Alasady, M.J, Varney, K.M, Toth, E.A, MacKerell Jr, A.D, Coop, A, Weber, D.J.
Deposit date:2015-09-03
Release date:2016-01-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.591 Å)
Cite:Small Molecule Inhibitors of Ca(2+)-S100B Reveal Two Protein Conformations.
J.Med.Chem., 59, 2016
5DKN
DownloadVisualize
BU of 5dkn by Molmil
Crystal Structure of Calcium-loaded S100B bound to SBi4225
Descriptor: 2,2'-[heptane-1,7-diylbis(oxybenzene-4,1-diyl)]bis(1H-imidazole), CALCIUM ION, Protein S100-B
Authors:Cavalier, M.C, Ansari, M.I, Pierce, A.D, Wilder, P.T, McKnight, L.E, Raman, E.P, Neau, D.B, Bezawada, P, Alasady, M.J, Varney, K.M, Toth, E.A, MacKerell Jr, A.D, Coop, A, Weber, D.J.
Deposit date:2015-09-03
Release date:2016-01-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.528 Å)
Cite:Small Molecule Inhibitors of Ca(2+)-S100B Reveal Two Protein Conformations.
J.Med.Chem., 59, 2016
5DKR
DownloadVisualize
BU of 5dkr by Molmil
Crystal Structure of Calcium-loaded S100B bound to SBi29
Descriptor: 2-[4-(4-carbamimidoylphenoxy)phenyl]-1H-indole-6-carboximidamide, CALCIUM ION, Protein S100-B
Authors:Cavalier, M.C, Ansari, M.I, Pierce, A.D, Wilder, P.T, McKnight, L.E, Raman, E.P, Neau, D.B, Bezawada, P, Alasady, M.J, Varney, K.M, Toth, E.A, MacKerell Jr, A.D, Coop, A, Weber, D.J.
Deposit date:2015-09-03
Release date:2016-01-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.742 Å)
Cite:Small Molecule Inhibitors of Ca(2+)-S100B Reveal Two Protein Conformations.
J.Med.Chem., 59, 2016
6UWT
DownloadVisualize
BU of 6uwt by Molmil
Clostridium difficile binary toxin translocase CDTb tetradecamer in symmetric conformation
Descriptor: ADP-ribosyltransferase binding component, CALCIUM ION
Authors:Xu, X, Pozharski, E, des Georges, A.
Deposit date:2019-11-05
Release date:2020-01-22
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structure of the cell-binding component of theClostridium difficilebinary toxin reveals a di-heptamer macromolecular assembly.
Proc.Natl.Acad.Sci.USA, 117, 2020
6UWR
DownloadVisualize
BU of 6uwr by Molmil
Clostridium difficile binary toxin translocase CDTb in asymmetric tetradecamer conformation
Descriptor: ADP-ribosyltransferase binding component, CALCIUM ION
Authors:Xu, X, Pozharski, E, des Georges, A.
Deposit date:2019-11-05
Release date:2020-01-22
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structure of the cell-binding component of theClostridium difficilebinary toxin reveals a di-heptamer macromolecular assembly.
Proc.Natl.Acad.Sci.USA, 117, 2020
6UWO
DownloadVisualize
BU of 6uwo by Molmil
Crystal structure of receptor binding domain 2 from Clostridium difficile translocase CDTb
Descriptor: ADP-ribosyltransferase binding component
Authors:Pozharski, E.
Deposit date:2019-11-05
Release date:2020-01-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the cell-binding component of theClostridium difficilebinary toxin reveals a di-heptamer macromolecular assembly.
Proc.Natl.Acad.Sci.USA, 117, 2020
5HF7
DownloadVisualize
BU of 5hf7 by Molmil
TDG enzyme-substrate complex
Descriptor: DNA (28-MER), G/T mismatch-specific thymine DNA glycosylase
Authors:Pozharski, E, Malik, S.S, Drohat, A.C.
Deposit date:2016-01-06
Release date:2016-09-28
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structural basis of damage recognition by thymine DNA glycosylase: Key roles for N-terminal residues.
Nucleic Acids Res., 44, 2016
6UWI
DownloadVisualize
BU of 6uwi by Molmil
Crystal structure of the Clostridium difficile translocase CDTb
Descriptor: ADP-ribosyltransferase binding component, CALCIUM ION
Authors:Pozharski, E.
Deposit date:2019-11-05
Release date:2020-01-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Structure of the cell-binding component of theClostridium difficilebinary toxin reveals a di-heptamer macromolecular assembly.
Proc.Natl.Acad.Sci.USA, 117, 2020
2Q91
DownloadVisualize
BU of 2q91 by Molmil
Structure of the Ca2+-Bound Activated Form of the S100A4 Metastasis Factor
Descriptor: CALCIUM ION, S100A4 Metastasis Factor
Authors:Malashkevich, V.N, Knight, D, Ramagopal, U.A, Almo, S.C, Bresnick, A.R.
Deposit date:2007-06-12
Release date:2008-02-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Structure of Ca(2+)-Bound S100A4 and Its Interaction with Peptides Derived from Nonmuscle Myosin-IIA.
Biochemistry, 47, 2008
4DIR
DownloadVisualize
BU of 4dir by Molmil
2.6 Angstrom X-ray structure of human CA(2+)-S100A5
Descriptor: CALCIUM ION, Protein S100-A5
Authors:Liriano, M.A, Toth, E.A, Weber, D.J.
Deposit date:2012-01-31
Release date:2013-02-13
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Target-binding to S100A5 changes Ca(2+)-binding affinity and dynamics.
To be Published
4XEG
DownloadVisualize
BU of 4xeg by Molmil
Structure of the enzyme-product complex resulting from TDG action on a G/hmU mismatch
Descriptor: 1,2-ETHANEDIOL, ACETIC ACID, DNA (28-MER), ...
Authors:Pozharski, E, Malik, S.S, Drohat, A.C.
Deposit date:2014-12-23
Release date:2015-09-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Thymine DNA glycosylase exhibits negligible affinity for nucleobases that it removes from DNA.
Nucleic Acids Res., 43, 2015
5JXY
DownloadVisualize
BU of 5jxy by Molmil
Enzyme-substrate complex of TDG catalytic domain bound to a G/U analog
Descriptor: DNA (28-MER), G/T mismatch-specific thymine DNA glycosylase
Authors:Pidugu, L.S, Pozharski, E, Malik, S.S, Drohat, A.C.
Deposit date:2016-05-13
Release date:2016-09-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Structural basis of damage recognition by thymine DNA glycosylase: Key roles for N-terminal residues.
Nucleic Acids Res., 44, 2016
8EKK
DownloadVisualize
BU of 8ekk by Molmil
Clostridioides difficile binary toxin translocase CDTb wild-type after calcium depletion from receptor binding domain 1 (RBD1) - Class 2
Descriptor: ADP-ribosyltransferase binding component, CALCIUM ION
Authors:Abeyawardhane, D.L, Pozharski, E.
Deposit date:2022-09-21
Release date:2023-09-27
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:Calcium-mediated Pore Formation of Clostridioides difficile Binary Toxin
To Be Published
3RM1
DownloadVisualize
BU of 3rm1 by Molmil
1.24 Angstrom X-ray structure of bovine TRTK12-Ca(2+)-S100B D63N
Descriptor: CALCIUM ION, F-actin-capping protein subunit alpha-2, Protein S100-B
Authors:Liriano, M.A, Weber, D.J.
Deposit date:2011-04-20
Release date:2012-04-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:The effects of CapZ peptide (TRTK12) on the protein dynamics of S100B and S100B D63N
To be Published
3RLZ
DownloadVisualize
BU of 3rlz by Molmil
2.0 Angstrom X-ray structure of bovine Ca(2+)-S100B D63N
Descriptor: CALCIUM ION, Protein S100-B
Authors:Liriano, M.A, Weber, D.J.
Deposit date:2011-04-20
Release date:2012-04-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:The effects of CapZ peptide (TRTK12) on the protein dynamics of S100B and S100B D63N
To be Published
3IQQ
DownloadVisualize
BU of 3iqq by Molmil
X-ray structure of bovine TRTK12-Ca(2+)-S100B
Descriptor: CALCIUM ION, Protein S100-B, TRTK12 peptide, ...
Authors:Charpentier, T.H, Weber, D.J, Toth, E.A.
Deposit date:2009-08-20
Release date:2010-02-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:The Effects of CapZ Peptide (TRTK-12) Binding to S100B-Ca(2+) as Examined by NMR and X-ray Crystallography
J.Mol.Biol., 396, 2010
3IQO
DownloadVisualize
BU of 3iqo by Molmil
1.5 angstrom X-ray structure of bovine Ca(2+)-S100B
Descriptor: CALCIUM ION, Protein S100-B
Authors:Charpentier, T.H, Weber, D.J, Toth, E.A.
Deposit date:2009-08-20
Release date:2010-02-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The Effects of CapZ Peptide (TRTK-12) Binding to S100B-Ca(2+) as Examined by NMR and X-ray Crystallography
J.Mol.Biol., 396, 2010
3GK2
DownloadVisualize
BU of 3gk2 by Molmil
X-ray structure of bovine SBi279,Ca(2+)-S100B
Descriptor: (Z)-2-[2-(4-methylpiperazin-1-yl)benzyl]diazenecarbothioamide, CACODYLATE ION, CALCIUM ION, ...
Authors:Charpentier, T.H, Weber, D.J, Toth, E.A.
Deposit date:2009-03-09
Release date:2009-06-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.984 Å)
Cite:Small molecules bound to unique sites in the target protein binding cleft of calcium-bound S100B as characterized by nuclear magnetic resonance and X-ray crystallography.
Biochemistry, 48, 2009

 

12>

221371

PDB entries from 2024-06-19

PDB statisticsPDBj update infoContact PDBjnumon