5K33
Crystal structure of extracellular domain of HER2 in complex with Fcab STAB19
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Ig gamma-1 chain C region | polymer | 227 | 25567.9 | 1 | UniProt (P01857) Pfam (PF07654) In PDB | Homo sapiens (Human) | |
2 | C | Receptor tyrosine-protein kinase erbB-2 | polymer | 607 | 66989.1 | 1 | UniProt (P04626) Pfam (PF01030) Pfam (PF00757) Pfam (PF14843) In PDB | Homo sapiens (Human) | Metastatic lymph node gene 19 protein,MLN 19,Proto-oncogene Neu,Proto-oncogene c-ErbB-2,Tyrosine kinase-type cell surface receptor HER2,p185erbB2 |
3 | B | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G22768VO) | |||
4 | D | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G81315DD) | |||
5 | A | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
6 | C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) |
Sequence modifications
A: 225 - 446 (UniProt: P01857)
PDB | External Database | Details |
---|---|---|
Tyr 358 | Leu 241 | engineered mutation |
Leu 359 | Thr 242 | engineered mutation |
Ser 360 | Lys 243 | engineered mutation |
Asp 361 | Asn 244 | engineered mutation |
Ser 362 | Gln 245 | engineered mutation |
Pro 413 | - | insertion |
Arg 414 | - | insertion |
His 415 | - | insertion |
Ser 415 | - | insertion |
Glu 415 | - | insertion |
Thr 415 | Asp 296 | engineered mutation |
Met 415 | Lys 297 | engineered mutation |
Arg 415 | Ser 298 | engineered mutation |
Ala 418 | Gln 301 | engineered mutation |
His 419 | Gln 302 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 92557.0 | |
Branched | Number of molecules | 2 |
Total formula weight | 1659.5 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 534.5 | |
All* | Total formula weight | 94751.0 |