4JV5
Crystal structures of pseudouridinilated stop codons with ASLs
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | 16S ribosomal RNA | polymer | 1517 | 492372.5 | 1 | GenBank (55771382) | Thermus thermophilus | |
| 2 | B | 30S ribosomal protein S2 | polymer | 234 | 26987.3 | 1 | UniProt (P80371) Pfam (PF00318) In PDB | Thermus thermophilus | |
| 3 | C | 30S ribosomal protein S3 | polymer | 206 | 22862.4 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) In PDB | Thermus thermophilus | |
| 4 | D | 30S ribosomal protein S4 | polymer | 208 | 24242.3 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) In PDB | Thermus thermophilus | |
| 5 | E | 30S ribosomal protein S5 | polymer | 150 | 16331.1 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) In PDB | Thermus thermophilus | |
| 6 | F | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) In PDB | Thermus thermophilus | |
| 7 | G | 30S ribosomal protein S7 | polymer | 155 | 17919.8 | 1 | UniProt (P17291) Pfam (PF00177) In PDB | Thermus thermophilus | |
| 8 | H | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) In PDB | Thermus thermophilus | |
| 9 | I | 30S ribosomal protein S9 | polymer | 127 | 14298.5 | 1 | UniProt (P80374) Pfam (PF00380) In PDB | Thermus thermophilus | |
| 10 | J | 30S ribosomal protein S10 | polymer | 98 | 11299.2 | 1 | UniProt (Q5SHN7) Pfam (PF00338) In PDB | Thermus thermophilus | |
| 11 | K | 30S ribosomal protein S11 | polymer | 119 | 12606.4 | 1 | UniProt (P80376) Pfam (PF00411) In PDB | Thermus thermophilus | |
| 12 | L | 30S ribosomal protein S12 | polymer | 125 | 13875.4 | 1 | UniProt (Q5SHN3) Pfam (PF00164) In PDB | Thermus thermophilus | |
| 13 | M | 30S ribosomal protein S13 | polymer | 120 | 13623.9 | 1 | UniProt (P80377) Pfam (PF00416) In PDB | Thermus thermophilus | |
| 14 | N | 30S ribosomal protein S14 | polymer | 60 | 7027.5 | 1 | UniProt (Q5SHQ1) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) In PDB | Thermus thermophilus | |
| 15 | O | 30S ribosomal protein S15 | polymer | 88 | 10447.2 | 1 | UniProt (Q5SJ76) Pfam (PF00312) In PDB | Thermus thermophilus | |
| 16 | P | 30S ribosomal protein S16 | polymer | 83 | 9924.5 | 1 | UniProt (Q5SJH3) Pfam (PF00886) In PDB | Thermus thermophilus | |
| 17 | Q | 30S ribosomal protein S17 | polymer | 99 | 11722.9 | 1 | UniProt (Q5SHP7) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) In PDB | Thermus thermophilus | |
| 18 | R | 30S ribosomal protein S18 | polymer | 70 | 8155.8 | 1 | UniProt (Q5SLQ0) Pfam (PF01084) In PDB | Thermus thermophilus | |
| 19 | S | 30S ribosomal protein S19 | polymer | 78 | 8949.4 | 1 | UniProt (Q5SHP2) Pfam (PF00203) In PDB | Thermus thermophilus | |
| 20 | T | 30S ribosomal protein 20 | polymer | 99 | 10921.1 | 1 | UniProt (P80380) Pfam (PF01649) In PDB | Thermus thermophilus | |
| 21 | U | 30S ribosomal protein THX | polymer | 24 | 2960.5 | 1 | UniProt (Q5SIH3) Pfam (PF17070) In PDB | Thermus thermophilus | |
| 22 | X | mRNA | polymer | 5 | 1571.0 | 1 | Synthetic construct | ||
| 23 | Y | ASL-tRNA | polymer | 10 | 3170.9 | 1 | Synthetic construct | ||
| 24 | A, X, Y | MAGNESIUM ION | non-polymer | 24.3 | 17 | Chemie (MG) | |||
| 25 | D | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) |
Sequence modifications
A: 5 - 1544 (GenBank: 55771382)
I: 2 - 128 (UniProt: P80374)
| PDB | External Database | Details |
|---|---|---|
| A 80 | G 131378 | CONFLICT |
| PDB | External Database | Details |
|---|---|---|
| Arg 58 | His 58 | CONFLICT |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 23 |
| Total formula weight | 769126.8 | |
| Non-Polymers* | Number of molecules | 18 |
| Total formula weight | 478.6 | |
| All* | Total formula weight | 769605.4 |
