PDB: 321 件ウェブページステータス検索Chemie searchBIRD

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4X9J	EGR-1 with Doubly Methylated DNA 分子名称: DNA (5'-D(*AP*GP*(5CM)P*GP*TP*GP*GP*GP*(5CM)P*GP*T)-3'), DNA (5'-D(*TP*AP*(5CM)P*GP*CP*CP*CP*AP*(5CM)P*GP*C)-3'), Early growth response protein 1, ... 著者 White, M.A, Zandarashvili, L, Iwahara, J. 登録日 2014-12-11 公開日 2015-05-13 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.412 Å) 主引用文献 Structural impact of complete CpG methylation within target DNA on specific complex formation of the inducible transcription factor Egr-1. Febs Lett., 589, 2015
2KVF	Structure of the three-Cys2His2 domain of mouse testis zinc finger protein 分子名称: ZINC ION, Zinc finger and BTB domain-containing protein 32 著者 Chou, C.-C, Lou, Y.-C, Chen, C. 登録日 2010-03-15 公開日 2010-04-14 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structure and DNA binding characteristics of the three-Cys(2)His(2) domain of mouse testis zinc finger protein. Proteins, 78, 2010
2ADR	ADR1 DNA-BINDING DOMAIN FROM SACCHAROMYCES CEREVISIAE, NMR, 25 STRUCTURES 分子名称: ADR1, ZINC ION 著者 Bowers, P.M, Kleivt, R.E. 登録日 1998-03-20 公開日 1998-06-17 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 A folding transition and novel zinc finger accessory domain in the transcription factor ADR1. Nat.Struct.Biol., 6, 1999
5N14	NMR structure calculation of a composite Cys2His2 type zinc finger protein containing a non-peptide (or oligourea) helical domain 分子名称: Protein (chimeric oligourea-peptide zinc finger), ZINC ION 著者 Venkateshaiah M, V.K, Salgado, G. 登録日 2017-02-05 公開日 2017-04-12 最終更新日 2023-11-15 実験手法 SOLUTION NMR 主引用文献 NMR structure calculation of a composite Cys2His2 type zinc finger protein containing a non-peptide (or oligourea) helical domain. To Be Published
8H9H	Crystal structure of ZBTB7A in complex with GACCC-containing sequence 分子名称: DNA (5'-D(*TP*AP*AP*GP*GP*AP*CP*CP*CP*AP*GP*AP*T)-3'), DNA (5'-D(P*AP*AP*TP*CP*TP*GP*GP*GP*TP*CP*CP*TP*T)-3'), ZINC ION, ... 著者 Yang, Y. 登録日 2022-10-25 公開日 2023-04-26 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 ZBTB7A regulates primed-to-naive transition of pluripotent stem cells via recognition of the PNT-associated sequence by zinc fingers 1-2 and recognition of gamma-globin -200 gene element by zinc fingers 1-4. Febs J., 290, 2023
4IS1	Crystal structure of ZNF217 bound to DNA 分子名称: 5'-D(*AP*AP*TP*GP*CP*AP*GP*AP*AP*TP*CP*GP*AP*TP*TP*CP*TP*GP*CP*A)-3', 5'-D(*TP*TP*TP*GP*CP*AP*GP*AP*AP*TP*CP*GP*AP*TP*TP*CP*TP*GP*CP*A)-3', CHLORIDE ION, ... 著者 Vandevenne, M.S, Jacques, D.A, Guss, J.M, Mackay, J.P. 登録日 2013-01-16 公開日 2013-02-27 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 New insights into DNA recognition by zinc fingers revealed by structural analysis of the oncoprotein ZNF217. J.Biol.Chem., 288, 2013
3UK3	Crystal structure of ZNF217 bound to DNA 分子名称: 5'-D(*AP*AP*TP*GP*CP*AP*GP*AP*AP*TP*CP*GP*AP*TP*TP*CP*TP*GP*CP*A)-3', 5'-D(*TP*TP*TP*GP*CP*AP*GP*AP*AP*TP*CP*GP*AP*TP*TP*CP*TP*GP*CP*A)-3', CHLORIDE ION, ... 著者 Vandevenne, M.S, Jacques, D.A, Guss, J.M, Mackay, J.P. 登録日 2011-11-08 公開日 2012-12-05 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Rediscovering DNA recognition by classical Zinc Fingers. To be Published
7EYI	Crystal structure of ZBTB7A in complex with gamma-globin -200 sequence element with C-194A mutation 分子名称: BORIC ACID, DNA (5'-D(*AP*TP*AP*GP*GP*GP*CP*CP*CP*CP*TP*TP*CP*CP*CP*AP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*TP*GP*GP*GP*AP*AP*GP*GP*GP*GP*CP*CP*CP*TP*A)-3'), ... 著者 Yang, Y, Shi, Y.Y. 登録日 2021-05-31 公開日 2021-09-01 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.401 Å) 主引用文献 Structural basis for human ZBTB7A action at the fetal globin promoter. Cell Rep, 36, 2021
8A4I	Crystal structure of SALL4 zinc finger cluster 4 with AT-rich DNA 分子名称: DNA (5'-D(*GP*AP*TP*AP*TP*TP*AP*AP*TP*AP*TP*C)-3'), MAGNESIUM ION, Sal-like protein 4, ... 著者 Watson, J.A, Pantier, R, Jayachandran, U, Chhatbar, K, Alexander-Howden, B, Kruusvee, V, Prendecki, M, Bird, A, Cook, A.G. 登録日 2022-06-11 公開日 2023-01-11 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.76 Å) 主引用文献 Structure of SALL4 zinc finger domain reveals link between AT-rich DNA binding and Okihiro syndrome. Life Sci Alliance, 6, 2023
8JPY	Solution NMR Structure of Zinc-fingers 1 and 2 (fragment 257-320) from human Insulinoma-associated protein 1(INSM1) 分子名称: Insulinoma-associated protein 1, ZINC ION 著者 He, X.L, Yang, Y.H. 登録日 2023-06-13 公開日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Solution NMR Structure of Zinc-fingers 1 and 2 (fragment 257-320) from human Insulinoma-associated protein 1(INSM1) To Be Published
8JQ1	Solution NMR Structure of zinc fingers 1-2 (fragment 257-320) from human insulinoma-associated protein 1(INSM1) 分子名称: Insulinoma-associated protein 1, ZINC ION 著者 He, X.L, Yang, Y.H. 登録日 2023-06-13 公開日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Solution NMR Structure of zinc fingers 1-2 (fragment 257-320) from human insulinoma-associated protein 1(INSM1) To Be Published
4ZNF	HIGH-RESOLUTION THREE-DIMENSIONAL STRUCTURE OF A SINGLE ZINC FINGER FROM A HUMAN ENHANCER BINDING PROTEIN IN SOLUTION 分子名称: ZINC FINGER, ZINC ION 著者 Gronenborn, A.M, Clore, G.M, Omichinski, J.G. 登録日 1990-07-09 公開日 1992-01-15 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 High-resolution three-dimensional structure of a single zinc finger from a human enhancer binding protein in solution. Biochemistry, 29, 1990
9AZI	NMR solution structure of cell-permeant miniature protein ZF5.3 分子名称: Designed Zinc finger protein 5.3, ZINC ION 著者 Giudice, J.A, Kelly, M, Schepartz, A. 登録日 2024-03-11 公開日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structural and mechanistic basis for efficient endosomal escape by designed mini-proteins To be published
4M9E	Structure of Klf4 zinc finger DNA binding domain in complex with methylated DNA 分子名称: ACETATE ION, DNA (5'-D(*GP*AP*GP*GP*(5CM)P*GP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*AP*(5CM)P*GP*CP*CP*TP*C)-3'), ... 著者 Liu, Y, Olanrewaju, Y.O, Blumenthal, R.M, Zhang, X, Cheng, X. 登録日 2013-08-14 公開日 2014-02-12 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.851 Å) 主引用文献 Structural basis for Klf4 recognition of methylated DNA. Nucleic Acids Res., 42, 2014
4M9V	Zfp57 mutant (E182Q) in complex with 5-carboxylcytosine DNA 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CALCIUM ION, ... 著者 Liu, Y, Olanrewaju, Y.O, Zhang, X, Cheng, X. 登録日 2013-08-15 公開日 2013-11-27 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (0.969 Å) 主引用文献 DNA recognition of 5-carboxylcytosine by a zfp57 mutant at an atomic resolution of 0.97 angstrom. Biochemistry, 52, 2013
7TXC	HIC2 zinc finger domain in complex with the DNA binding motif-2 of the BCL11A enhancer 分子名称: DNA (5'-D(*AP*CP*TP*GP*TP*TP*GP*GP*CP*AP*TP*TP*AP*TP*CP*T)-3'), DNA (5'-D(*AP*GP*AP*TP*AP*AP*TP*GP*CP*CP*AP*AP*CP*AP*GP*T)-3'), Hypermethylated in cancer 2 protein, ... 著者 Horton, J.R, Ren, R, Cheng, X. 登録日 2022-02-08 公開日 2022-06-01 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (3.04 Å) 主引用文献 HIC2 controls developmental hemoglobin switching by repressing BCL11A transcription. Nat.Genet., 54, 2022
5A7U	Single-particle cryo-EM of co-translational folded adr1 domain inside the E. coli ribosome exit tunnel. 分子名称: REGULATORY PROTEIN ADR1, ZINC ION 著者 Nilsson, O.B, Hedman, R, Marino, J, Wickles, S, Bischoff, L, Johansson, M, Muller-Lucks, A, Trovato, F, Puglisi, J.D, O'Brien, E, Beckmann, R, von Heijne, G. 登録日 2015-07-10 公開日 2015-09-16 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (4.8 Å) 主引用文献 Cotranslational Protein Folding Inside the Ribosome Exit Tunnel. Cell Rep., 12, 2015
9CJA	Formerly degenerate seventh zinc finger domain from transcription factor ZNF711 rehabilitated by experimental NMR structure 分子名称: ZINC ION, Zinc finger protein 711 著者 Rua, A.J, Alexandrescu, A.T. 登録日 2024-07-05 公開日 2024-07-17 実験手法 SOLUTION NMR 主引用文献 Formerly degenerate seventh zinc finger domain from transcription factor ZNF711 rehabilitated by experimental NMR structure To Be Published
6E93	Crystal Structure of ZBTB38 C-terminal Zinc Fingers 6-9 in complex with methylated DNA 分子名称: DNA (5'-D(*GP*CP*AP*CP*TP*CP*AP*TP*(DCM)P*GP*GP*(DCM)P*GP*CP*AP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*TP*GP*(DCM)P*GP*CP*(DCM)P*GP*AP*TP*GP*AP*GP*TP*GP*C)-3'), ZINC ION, ... 著者 Hudson, N.O, Whitby, F.G, Buck-Koehntop, B.A. 登録日 2018-07-31 公開日 2018-11-07 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.747 Å) 主引用文献 Structural insights into methylated DNA recognition by the C-terminal zinc fingers of the DNA reader protein ZBTB38. J. Biol. Chem., 293, 2018
6E94	Crystal Structure of ZBTB38 C-terminal Zinc Fingers 6-9 K1055R in complex with methylated DNA 分子名称: DNA (5'-D(*GP*CP*AP*CP*TP*CP*AP*TP*(DCM)P*GP*GP*(DCM)P*GP*CP*AP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*TP*GP*(DCM)P*GP*CP*(DCM)P*GP*AP*TP*GP*AP*GP*TP*GP*C)-3'), ZINC ION, ... 著者 Hudson, N.O, Whitby, F.G, Buck-Koehntop, B.A. 登録日 2018-07-31 公開日 2018-11-07 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.594 Å) 主引用文献 Structural insights into methylated DNA recognition by the C-terminal zinc fingers of the DNA reader protein ZBTB38. J. Biol. Chem., 293, 2018
5T0U	CTCF ZnF2-7 and DNA complex structure 分子名称: DNA (5'-D(*CP*CP*TP*CP*AP*CP*TP*AP*GP*CP*GP*CP*CP*CP*CP*CP*TP*GP*CP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*AP*GP*CP*AP*GP*GP*GP*GP*GP*CP*GP*CP*TP*AP*GP*TP*GP*AP*GP*G)-3'), Transcriptional repressor CTCF, ... 著者 Hashimoto, H, Wang, D, Cheng, X. 登録日 2016-08-16 公開日 2017-05-24 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (3.199 Å) 主引用文献 Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA. Mol. Cell, 66, 2017
5T00	Human CTCF ZnF3-7 and methylated DNA complex 分子名称: DNA (5'-GCCAGCAGGGGG(5CM)GCTA-3'), DNA (5'-TAG(5CM)GCCCCCTGCTGGC-3'), Transcriptional repressor CTCF, ... 著者 Hashimoto, H, Wang, D, Cheng, X. 登録日 2016-08-15 公開日 2017-05-24 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.19 Å) 主引用文献 Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA. Mol. Cell, 66, 2017
4F2J	Crystal structure of ZNF217 bound to DNA, P6522 crystal form 分子名称: 5'-D(*TP*TP*TP*GP*CP*AP*GP*AP*AP*TP*CP*GP*AP*TP*TP*CP*TP*GP*CP*A)-3', ZINC ION, Zinc finger protein 217 著者 Vandevenne, M.S, Jacques, D.A, Guss, J.M, Mackay, J.P. 登録日 2012-05-08 公開日 2013-02-27 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.64 Å) 主引用文献 New insights into DNA recognition by zinc fingers revealed by structural analysis of the oncoprotein ZNF217 J.Biol.Chem., 288, 2013
4GZN	Mouse ZFP57 zinc fingers in complex with methylated DNA 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CALCIUM ION, ... 著者 Liu, Y, Zhang, X, Cheng, X. 登録日 2012-09-06 公開日 2012-10-17 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (0.99 Å) 主引用文献 An atomic model of Zfp57 recognition of CpG methylation within a specific DNA sequence. Genes Dev., 26, 2012
6ML2	ZBTB24 Zinc Fingers 4-8 with 19+1mer DNA Oligonucleotide (Sequence 1) 分子名称: DNA (5'-D(*AP*CP*GP*CP*AP*GP*GP*TP*CP*CP*TP*GP*GP*CP*AP*GP*CP*TP*AP*A)-3'), DNA (5'-D(*TP*TP*TP*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP*AP*CP*CP*TP*GP*CP*G)-3'), ZINC ION, ... 著者 Horton, J.R, Cheng, X, Ren, R. 登録日 2018-09-26 公開日 2019-07-03 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.874 Å) 主引用文献 Structural basis of specific DNA binding by the transcription factor ZBTB24. Nucleic Acids Res., 47, 2019

 

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