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8UKS

RNA polymerase II elongation complex with Fapy-dG lesion soaking with CTP before chemistry

Functional Information from PROSITE/UniProt
site_idPS00446
Number of Residues41
DetailsRNA_POL_D_30KD RNA polymerases D / 30 to 40 Kd subunits signature. NSLRRvmiaeiptlAidsVevetNtTvlaDEfIAhRLGLIP
ChainResidueDetails
CASN31-PRO71

site_idPS01166
Number of Residues13
DetailsRNA_POL_BETA RNA polymerases beta chain signature. GdKFASrHGQKGT
ChainResidueDetails
BGLY977-THR989

site_idPS00466
Number of Residues36
DetailsZF_TFIIS_1 Zinc finger TFIIS-type signature. CpkChsrenvffqSQQRRkDTSmvlffvCls...CshiF
ChainResidueDetails
ICYS75-PHE110

site_idPS01112
Number of Residues10
DetailsRNA_POL_N_8KD RNA polymerases N / 8 Kd subunits signature. IVPVrCFSCG
ChainResidueDetails
JILE2-GLY11

site_idPS00115
Number of Residues7
DetailsRNA_POL_II_REPEAT Eukaryotic RNA polymerase II heptapeptide repeat. YSPTSPA
ChainResidueDetails
ATYR1549-ALA1555
ATYR1612-SER1618
ATYR1619-SER1625
ATYR1626-SER1632
ATYR1633-SER1639
ATYR1640-SER1646
ATYR1647-SER1653
ATYR1654-ALA1660
ATYR1661-SER1667
ATYR1668-SER1674
ATYR1675-SER1681
ATYR1556-SER1562
ATYR1682-SER1688
ATYR1689-ASN1695
ATYR1696-SER1702
ATYR1563-SER1569
ATYR1570-SER1576
ATYR1577-SER1583
ATYR1584-SER1590
ATYR1591-SER1597
ATYR1598-SER1604
ATYR1605-SER1611

site_idPS01154
Number of Residues32
DetailsRNA_POL_L_13KD RNA polymerases L / 13 to 16 Kd subunits signature. FekEdHTLgNlIraeLlndrkVlfaaYkveHP
ChainResidueDetails
KPHE35-PRO66

site_idPS01110
Number of Residues14
DetailsRNA_POL_H_23KD RNA polymerases H / 23 Kd subunits signature. HELVPKHirLssDE
ChainResidueDetails
EHIS147-GLU160

site_idPS01111
Number of Residues15
DetailsRNA_POL_K_14KD RNA polymerases K / 14 to 18 Kd subunits signature. TkYErARiLGtRAlQ
ChainResidueDetails
FTHR86-GLN100

site_idPS01030
Number of Residues27
DetailsRNA_POL_M_15KD RNA polymerases M / 15 Kd subunits signature. FCRDCNNMLypredkennrllfeCrtC
ChainResidueDetails
IPHE6-CYS32

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: N-acetylserine => ECO:0007744|PubMed:22814378
ChainResidueDetails
HSER2
AASP483
AASP485
CCYS88
CCYS92
CCYS95
ACYS107
ACYS110
ACYS148
ACYS167
AASP481

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:18407956
ChainResidueDetails
HTHR68
BCYS1163
BCYS1166
BCYS1182
BCYS1185

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:17330950, ECO:0007744|PubMed:18407956
ChainResidueDetails
BSER919
ICYS10
ALYS1350
ICYS32

site_idSWS_FT_FI4
Number of Residues1
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:32142654, ECO:0007744|PubMed:22106047
ChainResidueDetails
ICYS78
ICYS103
ICYS106
ALYS1246

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18407956
ChainResidueDetails
ISER40

Catalytic Information from CSA
site_idMCSA1
Number of Residues1
DetailsM-CSA 788
ChainResidueDetails
BASP837metal ligand
AASP483metal ligand
AASP485metal ligand
AHIS1085proton acceptor, proton donor

221051

PDB entries from 2024-06-12

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