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5E7M

Crystal structure of the active catalytic core of the human DEAD-box protein DDX3 bound to AMPPNP

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003724molecular_functionRNA helicase activity
A0005524molecular_functionATP binding
Functional Information from PDB Data
site_idAC1
Number of Residues16
Detailsbinding site for residue ANP A 801
ChainResidue
ATYR200
ALYS230
ATHR231
ALEU278
AGLN281
AGLU285
AGLU348
AHOH902
AARG202
APRO203
ATHR204
AGLN207
ATHR226
AGLY227
ASER228
AGLY229

Functional Information from PROSITE/UniProt
site_idPS00039
Number of Residues9
DetailsDEAD_ATP_HELICASE DEAD-box subfamily ATP-dependent helicases signature. VLDEADRmL
ChainResidueDetails
AVAL345-LEU353

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING:
ChainResidueDetails
ATYR200
AALA224

site_idSWS_FT_FI2
Number of Residues6
DetailsMOD_RES: Phosphoserine; by TBK1; in vitro => ECO:0000269|PubMed:18583960
ChainResidueDetails
ASER181
ASER240
ASER269
ASER442
ASER456
ASER520

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphoserine; by TBK1 => ECO:0000269|PubMed:18583960, ECO:0007744|PubMed:24275569
ChainResidueDetails
ASER183

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphoserine; by CSNK1E and TBK1; in vitro => ECO:0000269|PubMed:18583960, ECO:0000269|PubMed:29222110
ChainResidueDetails
ASER429
ASER543

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphothreonine; by TBK1; in vitro => ECO:0000269|PubMed:18583960
ChainResidueDetails
ATHR438
ATHR542

site_idSWS_FT_FI6
Number of Residues1
DetailsMOD_RES: Phosphothreonine; by CSNK1E; in vitro => ECO:0000269|PubMed:29222110
ChainResidueDetails
ATHR469

site_idSWS_FT_FI7
Number of Residues1
DetailsMOD_RES: Phosphoserine; by CSNK1E; in vitro => ECO:0000269|PubMed:29222110
ChainResidueDetails
ASER470

site_idSWS_FT_FI8
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25218447, ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS215

218853

PDB entries from 2024-04-24

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