4WQ5
YgjD(V85E)-YeaZ heterodimer in complex with ATP
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000287 | molecular_function | magnesium ion binding |
A | 0000408 | cellular_component | EKC/KEOPS complex |
A | 0002949 | biological_process | tRNA threonylcarbamoyladenosine modification |
A | 0005506 | molecular_function | iron ion binding |
A | 0005515 | molecular_function | protein binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0006400 | biological_process | tRNA modification |
A | 0008033 | biological_process | tRNA processing |
A | 0016746 | molecular_function | acyltransferase activity |
A | 0016747 | molecular_function | acyltransferase activity, transferring groups other than amino-acyl groups |
A | 0042802 | molecular_function | identical protein binding |
A | 0046872 | molecular_function | metal ion binding |
A | 0061711 | molecular_function | N(6)-L-threonylcarbamoyladenine synthase activity |
A | 0070525 | biological_process | tRNA threonylcarbamoyladenosine metabolic process |
A | 0140032 | molecular_function | glycosylation-dependent protein binding |
A | 1990145 | biological_process | maintenance of translational fidelity |
B | 0000287 | molecular_function | magnesium ion binding |
B | 0000408 | cellular_component | EKC/KEOPS complex |
B | 0002949 | biological_process | tRNA threonylcarbamoyladenosine modification |
B | 0005506 | molecular_function | iron ion binding |
B | 0005515 | molecular_function | protein binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0006400 | biological_process | tRNA modification |
B | 0008033 | biological_process | tRNA processing |
B | 0016746 | molecular_function | acyltransferase activity |
B | 0016747 | molecular_function | acyltransferase activity, transferring groups other than amino-acyl groups |
B | 0042802 | molecular_function | identical protein binding |
B | 0046872 | molecular_function | metal ion binding |
B | 0061711 | molecular_function | N(6)-L-threonylcarbamoyladenine synthase activity |
B | 0070525 | biological_process | tRNA threonylcarbamoyladenosine metabolic process |
B | 0140032 | molecular_function | glycosylation-dependent protein binding |
B | 1990145 | biological_process | maintenance of translational fidelity |
C | 0000408 | cellular_component | EKC/KEOPS complex |
C | 0002949 | biological_process | tRNA threonylcarbamoyladenosine modification |
C | 0005515 | molecular_function | protein binding |
C | 0005737 | cellular_component | cytoplasm |
C | 0005829 | cellular_component | cytosol |
C | 0008033 | biological_process | tRNA processing |
C | 0008237 | molecular_function | metallopeptidase activity |
C | 0042802 | molecular_function | identical protein binding |
C | 1990145 | biological_process | maintenance of translational fidelity |
D | 0000408 | cellular_component | EKC/KEOPS complex |
D | 0002949 | biological_process | tRNA threonylcarbamoyladenosine modification |
D | 0005515 | molecular_function | protein binding |
D | 0005737 | cellular_component | cytoplasm |
D | 0005829 | cellular_component | cytosol |
D | 0008033 | biological_process | tRNA processing |
D | 0008237 | molecular_function | metallopeptidase activity |
D | 0042802 | molecular_function | identical protein binding |
D | 1990145 | biological_process | maintenance of translational fidelity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | binding site for residue MG A 401 |
Chain | Residue |
A | ASP11 |
A | GLU12 |
A | ASP300 |
A | ATP403 |
site_id | AC2 |
Number of Residues | 4 |
Details | binding site for residue FE A 402 |
Chain | Residue |
A | HIS111 |
A | HIS115 |
A | ASP300 |
A | ATP403 |
site_id | AC3 |
Number of Residues | 18 |
Details | binding site for residue ATP A 403 |
Chain | Residue |
A | HIS115 |
A | SER136 |
A | GLY137 |
A | GLY138 |
A | HIS139 |
A | GLY163 |
A | ASP167 |
A | GLY180 |
A | PRO181 |
A | GLY268 |
A | VAL269 |
A | ASN272 |
A | CYS298 |
A | THR299 |
A | ASP300 |
A | MG401 |
A | FE402 |
A | MET112 |
site_id | AC4 |
Number of Residues | 1 |
Details | binding site for residue ACT A 405 |
Chain | Residue |
A | GLY149 |
site_id | AC5 |
Number of Residues | 4 |
Details | binding site for residue ACT A 406 |
Chain | Residue |
A | ARG96 |
A | ALA99 |
A | PHE100 |
A | VAL104 |
site_id | AC6 |
Number of Residues | 4 |
Details | binding site for residue ACT A 407 |
Chain | Residue |
B | PHE100 |
B | ALA101 |
C | SER52 |
C | LEU53 |
site_id | AC7 |
Number of Residues | 5 |
Details | binding site for residue MG B 401 |
Chain | Residue |
B | ASP11 |
B | GLU12 |
B | ASP300 |
B | ATP403 |
B | HOH515 |
site_id | AC8 |
Number of Residues | 4 |
Details | binding site for residue FE B 402 |
Chain | Residue |
B | HIS111 |
B | HIS115 |
B | ASP300 |
B | ATP403 |
site_id | AC9 |
Number of Residues | 19 |
Details | binding site for residue ATP B 403 |
Chain | Residue |
B | MET112 |
B | HIS115 |
B | SER136 |
B | GLY137 |
B | GLY138 |
B | HIS139 |
B | GLY163 |
B | ASP167 |
B | GLY180 |
B | PRO181 |
B | GLY268 |
B | VAL269 |
B | ASN272 |
B | CYS298 |
B | THR299 |
B | ASP300 |
B | MG401 |
B | FE402 |
B | HOH515 |
site_id | AD1 |
Number of Residues | 3 |
Details | binding site for residue ACT B 404 |
Chain | Residue |
B | TYR30 |
B | ARG53 |
B | LYS54 |
site_id | AD2 |
Number of Residues | 4 |
Details | binding site for residue ACT C 301 |
Chain | Residue |
C | ARG32 |
C | GLU33 |
C | HIS34 |
C | THR35 |
site_id | AD3 |
Number of Residues | 4 |
Details | binding site for residue GOL C 302 |
Chain | Residue |
C | SER67 |
C | PHE68 |
C | THR69 |
C | ARG118 |
site_id | AD4 |
Number of Residues | 4 |
Details | binding site for residue ACT D 301 |
Chain | Residue |
D | ARG32 |
D | GLU33 |
D | HIS34 |
D | THR35 |
site_id | AD5 |
Number of Residues | 1 |
Details | binding site for residue ACT D 302 |
Chain | Residue |
D | SER67 |
Functional Information from PROSITE/UniProt
site_id | PS01016 |
Number of Residues | 21 |
Details | GLYCOPROTEASE Glycoprotease family signature. RSlafaWDvPaIpvhHmeGHL |
Chain | Residue | Details |
A | ARG96-LEU116 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 14 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01445 |
Chain | Residue | Details |
A | ASP300 | |
B | HIS111 | |
B | HIS115 | |
B | LEU134 | |
B | ASP167 | |
B | GLY180 | |
B | ASN272 | |
B | ASP300 | |
A | LEU134 | |
A | ASP167 | |
A | GLY180 | |
A | ASN272 | |
A | HIS111 | |
A | HIS115 |