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4JIJ

Crystal structure of an inactive mutant of MMP-9 catalytic domain in complex with a fluorogenic synthetic peptidic substrate

Functional Information from GO Data
ChainGOidnamespacecontents
A0004222molecular_functionmetalloendopeptidase activity
A0006508biological_processproteolysis
A0008237molecular_functionmetallopeptidase activity
A0008270molecular_functionzinc ion binding
A0031012cellular_componentextracellular matrix
B0004222molecular_functionmetalloendopeptidase activity
B0006508biological_processproteolysis
B0008237molecular_functionmetallopeptidase activity
B0008270molecular_functionzinc ion binding
B0031012cellular_componentextracellular matrix
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE AZI A 301
ChainResidue
AALA189
AHIS190
AHIS226
AALA227
AHIS230
AZN302
PLEU3
PGLY4
PPHI5

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 302
ChainResidue
AHIS226
AHIS230
AHIS236
AAZI301
PGLY4

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 303
ChainResidue
AHIS175
AASP177
AHIS190
AHIS203

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 304
ChainResidue
AASP182
AGLY183
AASP185
ALEU187
AASP205
AGLU208

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SR A 305
ChainResidue
AASP165
AGLY197
AGLN199
AASP201
AHOH418
AHOH455
AHOH565

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SR A 306
ChainResidue
AASP131
AASP206
AGLU208
APGO307
AHOH434

site_idAC7
Number of Residues12
DetailsBINDING SITE FOR RESIDUE PGO A 307
ChainResidue
AASP131
AGLY197
AASP206
AASP207
AGLU208
ALEU209
ASR306
AHOH424
AHOH457
AHOH532
AHOH551
AHOH569

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 308
ChainResidue
AHIS266
AGLY269
AHOH539
BGLY106
BPHE107

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 309
ChainResidue
ALEU187
AHIS190
AHOH413

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PEG A 310
ChainResidue
AVAL216
AGLY217
ATYR248
AHOH437

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 311
ChainResidue
ALEU114
AGLY233
AHOH428
AHOH430
AHOH548

site_idBC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE AZI Q 101
ChainResidue
BALA189
BHIS190
BHIS226
BALA227
BHIS230
BZN301
QLEU3
QGLY4
QPHI5

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 301
ChainResidue
BHIS226
BHIS230
BHIS236
QGLY4
QAZI101

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 302
ChainResidue
BHIS175
BASP177
BHIS190
BHIS203

site_idBC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 303
ChainResidue
BASP182
BGLY183
BASP185
BLEU187
BASP205
BGLU208

site_idBC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SR B 304
ChainResidue
BALA164
BASP165
BGLY197
BGLN199
BASP201
BHOH451
BHOH455

site_idBC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SR B 305
ChainResidue
BPGO306
BHOH422
BASP131
BASP206
BGLU208

site_idBC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PGO B 306
ChainResidue
BASP131
BASP206
BASP207
BGLU208
BSR305
BHOH423
BHOH573

site_idCC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO B 307
ChainResidue
BHIS117
BHOH523

site_idCC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 308
ChainResidue
BTYR245
BMET247
BHOH593
QARG8

site_idCC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 309
ChainResidue
BGLY217
BTYR218
BHOH576

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: ACT_SITE => ECO:0000269|PubMed:12051944
ChainResidueDetails
AALA227
BALA227

site_idSWS_FT_FI2
Number of Residues24
DetailsBINDING: BINDING => ECO:0000269|PubMed:12051944
ChainResidueDetails
AASP131
AASP205
AASP206
AGLU208
BASP131
BASP165
BASP182
BGLY183
BASP185
BLEU187
BGLY197
AASP165
BGLN199
BASP201
BASP205
BASP206
BGLU208
AASP182
AGLY183
AASP185
ALEU187
AGLY197
AGLN199
AASP201

site_idSWS_FT_FI3
Number of Residues14
DetailsBINDING: BINDING => ECO:0000269|PubMed:12051944, ECO:0000269|PubMed:12077439
ChainResidueDetails
AHIS175
BHIS190
BHIS203
BHIS226
BHIS230
BHIS236
AASP177
AHIS190
AHIS203
AHIS226
AHIS230
AHIS236
BHIS175
BASP177

site_idSWS_FT_FI4
Number of Residues4
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000255
ChainResidueDetails
AASN120
AASN127
BASN120
BASN127

218853

PDB entries from 2024-04-24

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