5FPV
Crystal structure of human JMJD2A in complex with compound KDOAM20A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-12-16 |
Detector | DECTRIS PILATUS 6M |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 111.346, 103.509, 157.103 |
Unit cell angles | 90.00, 106.37, 90.00 |
Refinement procedure
Resolution | 85.327 - 2.440 |
Rwork | 0.196 |
R-free | 0.22890 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ura |
RMSD bond length | 0.007 |
RMSD bond angle | 1.136 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | PHENIX ((PHENIX.REFINE)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 106.830 | 2.570 |
High resolution limit [Å] | 2.440 | 2.440 |
Rmerge | 0.090 | 0.560 |
Number of reflections | 438854 | |
<I/σ(I)> | 11.6 | 2.3 |
Completeness [%] | 98.7 | 99.4 |
Redundancy | 3.6 | 3.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | 5.9 | 0.1M BIS-TRIS PH 5.9, 0.15M AMMONIUM SULFATE, 11% PEG3350 |