5DOQ
The structure of bd oxidase from Geobacillus thermodenitrificans
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-12-01 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.738290 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 110.060, 120.860, 122.720 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.000 - 3.050 |
R-factor | 0.32015 |
Rwork | 0.319 |
R-free | 0.33472 |
Structure solution method | SAD |
RMSD bond length | 0.007 |
RMSD bond angle | 1.112 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | SHELX |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.120 |
High resolution limit [Å] | 3.050 | 3.050 |
Rmerge | 0.099 | 2.200 |
Number of reflections | 18373 | |
<I/σ(I)> | 19.17 | 3.03 |
Completeness [%] | 56.7 | 2.6 |
Redundancy | 31.44 | 19.15 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291.15 | PEG 400, Ammonium sulfate, Na-HEPES |