A paper regarding Molmil , a molecular viewer developed by PDBj, has been published . A paper regarding Molmil, a molecular viewer developed by PDBj, has been published. |
A WEB site and movies are available for “Shapes of proteins for living things – Molecules of COVID-19” A special WEB site and movies for Coronavirus 3D structure are now available. ... things – Molecules of COVID-19”. Using Molmil, we show 3D structures of a virion, spike proteins, receptors and antibodies, mutations of delta variant, antibody cocktail ... |
A fasta file for all the sequence information is now available from the PDBj ftp site. In addition to fasta sequence information ('fasta_seq_data/PDBID_seq.txt') for each PDB entry, a fasta file for all the sequence information ('all_fasta_sequence.txt.gz') is now available from the PDBj ftp site. |
A paper describing PDBj's new tools and activities published in Protein Science. ... functions in Data-out activities at Protein Data Bank Japan (PDBj) Kinjo, A.R., Bekker, G.-J., Wako, H., Endo, S., Tsuchiya, Y., Sato, H ... |
a tutorial about PDBj Mine search services -FAQ ... on the PDBj Mine search service? A) Using PDBj Mine, you can do Quick search, Advanced search and SQL ... |
a tutorial about PDBj search services -FAQ ... available on how to use various search services at PDBj? A) Click on the "Help" or "?" link in the Search panel from the ... |
On 10 Nov (Sat) and 11 (Sun), we exhibit a booth in \ ... 2018 (Sun) (JST). The venue is around Odaiba, Tokyo, Japan. We exhibit a booth in this event. Exhibition date and time: - 10th Nov 2018 (Sat ... |
PDBj has released a new service 'Chemie search' and a modified 'search bar' . PDBj has released a new service 'Chemie search'. And the 'search bar' is modified and allows you to more quickly find the resource or service you're looking for. |
Structural Life Science - 7th International Conference on Structural Genomics (ICSG2013-SLS) will be held in Sapporo, Japan, July 29th - August 1st, 2013. PDBj will introduce activities of PDBj and wwPDB in a booth display. Structural Life Science - 7th International Conference on Structural Genomics (ICSG2013-SLS) will be held in Sapporo, Japan, July 29th - August 1st, 2013. PDBj will introduce activities of PDBj and wwPDB in a booth display. |
[wwPDB] The PDB Archive Reaches a Significant Milestone With this week's update, the PDB archive has passed the milestone of 150,000 entries, and now contains a total of 150,145. (wwPDB news) |
How can I submit a hybrid structure factor data with two datasets(x-ray/neutron)?- FAQ ... structure factor data with two datasets(x-ray/neutron)? A) You can generate a structure factor data with the following procedures. (original.mtz contains as follows ... |
The 12th AsCA will be held in Hong Kong from 7 to 10 December. Haruki Nakamura, Head of PDBj will give a poster presentation to introduce PDBj's web services and our latest activities. ... the Protein Data Bank (PDB)". Haruki Nakamura, Head of PDBj, will give a poster presentation to introduce PDBj's web services and our latest activities ... |
[wwPDB] PDB Certified as a Trustworthy Data Repository PDB Certified as a Trustworthy Data Repository (wwPDB news) |
The wwPDB is going to start to use a new standard format, PDBx/mmCIF in 2014, replacing the legacy \ The wwPDB is going to start to use a new standard format, PDBx/mmCIF in 2014, replacing the legacy "PDB format" that has been used since nineteen-seventies. The details are shown in the Web page for the new standard format. |
PDB Reaches a New Milestone: 100,000+ Entries ( wwPDB News ) PDB Reaches a New Milestone: 100,000+ Entries (wwPDB News) |
[wwPDB] Depositing a Structure? Include Your ORCiD Depositing a Structure? Include Your ORCiD (wwPDB news) |
We'll hold a luncheon seminar at the 27th Biophysical Society of Taiwan We will hold a luncheon seminar on Thursday, May 18, 2023 at the 27th Biophysical Society ... |
[wwPDB] A tribute to Prof. Michael G. Rossmann ... of Michael's key discoveries is of the Rossmann fold, a structural motif commonly found in enzymes that bind to dinucleotide ... new therapeutics to treat and prevent viral infections. Michael was a member of the wwPDB advisory committee for four years, ... |
On 18th Aug (Sun), we exhibit a booth at the 29th Science Festa Osaka ... at the 29th Science Festa Osaka, which is a scientific event for young people. The exhibition day of our booth is ... |
[wwPDB] Distribution of NMR data in a unified format at the PDB archive ... format; Gutmanas et al. (2015) NMR Exchange Format: a unified and open standard for representation of NMR restraint data ... existing directories “nmr_restraints” and “nmr_chemical_shifts”. A standardized naming convention for NMR unified data will also ... |
On 24th Sep, we’ll hold a luncheon seminar at the Annual Meeting of the Biophysical Society of Japan in Miyazaki On 24th Sep, we will hold a luncheon seminar at the 57th Annual Meeting of the Biophysical Society of ... to 29th Aug 16:00 (JST). The participants are decided by drawing. * A "Seminar Numbered Ticket" distribution desk will be set up from around 08 ... |
The Road to 100,000 Entries: Building a Community Resource ( wwPDB News ) The Road to 100,000 Entries: Building a Community Resource (wwPDB News) |
We start a molmil service to display eF-site electrostatic molecular surfaces. We start a Molmil service to display eF-site electrostatic molecular surfaces. |
Format Conversion: Do you provide a service to convert the file format between PDB format and PDBx/mmCIF? - FAQ Q) Format Conversion: Do you provide a service to convert the file format between PDB format and PDBx/mmCIF? A) By using our Format Conversion web service, you can convert the file format between PDB format and PDBx/mmCIF. [Back to the question list] |
[wwPDB] PDB-Dev: A Prototype System for Integrative/Hybrid Structural Models announced in Structure PDB-Dev: A Prototype System for Integrative/Hybrid Structural Models announced in Structure (wwPDB News) |