| On 10 Nov (Sat) and 11 (Sun), we exhibit a booth in \ ... 2018 (Sun) (JST). The venue is around Odaiba, Tokyo, Japan. We exhibit a booth in this event. Exhibition date and time: - 10th Nov 2018 (Sat ... |
| PDBj has started a service to link each PDBID to the database for Intrinsic Disordered proteins, IDEAL , which is developed by Nagoya University group. PDBj has started a service to link each PDBID to the database for Intrinsic Disordered proteins, IDEAL, which is developed by Nagoya University group. |
| [wwPDB] The PDB Archive Reaches a Significant Milestone With this week's update, the PDB archive has passed the milestone of 150,000 entries, and now contains a total of 150,145. (wwPDB news) |
| The wwPDB is going to start to use a new standard format, PDBx/mmCIF in 2014, replacing the legacy \ The wwPDB is going to start to use a new standard format, PDBx/mmCIF in 2014, replacing the legacy "PDB format" that has been used since nineteen-seventies. The details are shown in the Web page for the new standard format. |
| We start a molmil service to display eF-site electrostatic molecular surfaces. We start a Molmil service to display eF-site electrostatic molecular surfaces. |
| PDB Reaches a New Milestone: 100,000+ Entries ( wwPDB News ) PDB Reaches a New Milestone: 100,000+ Entries (wwPDB News) |
| Data Management: A global coalition to sustain core data ( wwPDB News ) Data Management: A global coalition to sustain core data (wwPDB News) |
| The 12th AsCA will be held in Hong Kong from 7 to 10 December. Haruki Nakamura, Head of PDBj will give a poster presentation to introduce PDBj's web services and our latest activities. ... the Protein Data Bank (PDB)". Haruki Nakamura, Head of PDBj, will give a poster presentation to introduce PDBj's web services and our latest activities ... |
| The Road to 100,000 Entries: Building a Community Resource ( wwPDB News ) The Road to 100,000 Entries: Building a Community Resource (wwPDB News) |
| [wwPDB] Access Improved Carbohydrate Data at the PDB ... PDB structures Detailed information about this project, including a list of remediated PDB entries, is available at ... the February 2020 announcement. The wwPDB has created a new ‘branched’ entity representation for polysaccharides, describing all ... |
| structural domain ... secondary structure and tertiary structure. For single domain structures, a structural domain can be thought of as being equivalent to ... SCOP and CATH databases which give domain definitions for a large number of PDB entries using rather well accepted ... |
| [wwPDB] Prototype of PDB NextGen Archive now available ... (SIFTS) project (https://www.ebi.ac.uk/pdbe/docs/sifts/), a service developed and maintained by the PDBe and UniProt teams at EMBL ... ftp-nextgen.pdbj.org Data are structured based on entry ID with a two letter hash code, ‘third from last character’ and ‘ ... |
| [wwPDB] Time-stamped Copies of PDB and EMDB Archives ... been added to ftp://snapshots.wwpdb.org and ftp://snapshots.pdbj.org. A snapshot of the PDB Core archive (ftp://ftp.wwpdb.org) as ... was modified. The snapshot of PDB Core Archive is 923 GB. A snapshot of the EMDB Core archive (ftp://ftp.ebi.ac.uk/pub ... |
| [wwPDB] EMDB policy and procedures document now available A comprehensive policy and procedures document for the EMDB archive has been ... policy recommends for single-particle depositions to include a primary map (as shown in the accompanying publication), a raw map (unmasked, unfiltered, unsharpened) and unmasked ... |
| [wwPDB] Time-stamped Copies of PDB and EMDB Archives ... the PDB Core Archive as of January 2, 2023 is available. A snapshot of the PDB Core archive (ftp://ftp.wwpdb.org, https:// ... file was modified. The snapshot of PDB Core Archive is 1086 GB. A snapshot of the EMDB Core archive (ftp://ftp.ebi.ac.uk/pub ... |
| [wwPDB] Paper Published on CryoEM Archiving and Validation Recommendations ... for deposition and validation of cryoEM structures, with a focus on single-particle analysis and setting community recommendations ... of these recommendations have already been implemented, such as a three-tiered strategy powered by the Validation Analysis ( ... |
| News on 2006-10-14 A new version of Structure Navigator-RT is provided so as to operate a Web service with the recent Grid technology: Opal-OP. |
| [wwPDB] Remediation of crystal structures deposited in non-standard coordinate frames ... 268 structure entries deposited to PDB in a non-standard coordinate frame or space group setting have been re-versioned ... |
| [wwPDB] Time-stamped Copies of wwPDB Archives A snapshot of the PDB Core archive (ftp://ftp.wwpdb.org) as of ... file was modified. The snapshot of PDB Core archive is 822 GB. A snapshot of the EMDB Core archive (ftp://ftp.ebi.ac.uk/pub ... |
| [wwPDB] Time-stamped Copies of PDB and EMDB Archives A snapshot of the PDB Core archive (ftp://ftp.wwpdb.org) as of ... file was modified. The snapshot of PDB Core archive is 575 GB. A snapshot of the EMDB Core archive (ftp://ftp.ebi.ac.uk/pub ... |
| [wwPDB] Job Posting: Founding Director, Protein Data Bank China A job is opening for a founding director of Protein Data Bank China (PDBc), with the primary task of establishing structure archiving activities in China. (wwPDB news) |
| [wwPDB] Enhanced Collection of Starting Models A new PDBx/mmCIF category, _pdbx_initial_refinement_model has been introduced to ... |
| [wwPDB] Paper Published on NextGen Archive A new paper describes how the recently-announced NextGen Archive provides centralized access ... |
| [wwPDB] Preprint Published on NextGen Archive A new paper describes how the recently-announced NextGen Archive provides centralized access ... |
| [wwPDB] Announcement of mandatory mmCIF submission published in Acta Cryst D A new publication in Acta Cryst D announces the mandatory submission of PDBx/mmCIF to the PDB for crystallographic depositions. (wwPDB news) |
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PDB entries from 2024-11-13
