SeSAW ... of the SeSAW web service. The main reason for the suspension is a lack of IT personnel needed to perform security and data updates. If ... |
Remediation of Structure Factor Data and Release Plan ... in the archive for format consistency and correspondence with coordinate data. As a result, around 43,800 structure factor files have been updated to standardize ... |
BMRB ... .pdbj.org/index_en.html BMRB (Biological Magnetic Resonance Data Bank) is a database for NMR data of peptides, proteins, and nucleic acids, managed by ... |
[wwPDB] Access SDF/MOL formatted CCD files from the PDB archive ... at https://files.wwpdb.org/pub/pdb/refdata/chem_comp/. In addition, a concatenated CCD file in SDF/MOL format is provided at https://files ... |
News on 2012-09-20 ... have been changed as follows. The previous URLs are still available for a while. - pdb.protein.osaka-u.ac.jp -> ftp.pdbj.org - snapshots.pdbj ... |
News on 2007-12-20 ... have started to provide remediated PDB archive via rsync protocol. Rsync is a software which synchronizes files and directories from one location to another while ... |
MAFFTash ... of the MAFFTash web service. The main reason for the suspension is a lack of IT personnel needed to perform security and data updates. If ... |
We are waiting for donation to the PDBj donation window in the Osaka University Foundation for the Future We established a PDBj dedicated donation window in the Osaka University Foundation for the Future. ... |
[wwPDB] ModelCIF Extension for Computed Structure Models ... , which is jointly managed by the worldwide Protein Data Bank (wwPDB) consortium. A software library called python-modelcif has been developed to support ModelCIF and ... |
DASH ... of the DASH web service. The main reason for the suspension is a lack of IT personnel needed to perform security and data updates. If ... |
The new format, v.1.9.0, for the EMDB header file (XML file associated with each map) has been released ... .pdbj.org/pub/emdb/doc/XML-schemas/Header-schema/current/emdb.xsd A complete list of changes can be found at the beginning of the ... |
[wwPDB] Congratulations to Poster Prize Winners ... : Nicholas Mamisashvili, Shelter Island High School, Molecular Dynamics Simulation of 6PEY.pdb a Novel Mutation in the Enzyme Methylenetetrahydrofolate Reductase - Best in Undergraduate: Ijeoma Okoye ... |
[wwPDB] OneDep highlights curated assemblies for review in Mol* ... Mol* 3D viewer for depositors to review. This viewer is available in a new Review section in the deposition interface, which is present after curation ... |
[wwPDB] Biocurator Milestone: >10,000 Depositions Processed ... PDBj in the Protein Research Foundation, Osaka. She has established herself as a highly qualified professional with deep understanding of scientific data and various experimental ... |
[wwPDB] Celebrating 20 Years of the wwPDB ... 2023 In July 2003, the Worldwide Protein Data Bank was launched as a partnership between RCSB Protein Data Bank (RCSB PDB, USA), Protein Data Bank ... |
[wwPDB] PDB NextGen Archive Now Provides Intra-molecular Connectivity ... file naming and data are structured based on extended PDB IDs with a two letter hash code, ‘third from last character' and 'second from last ... |
[wwPDB] Consistent Format for Validation and Coordinate Data ... Archives. The new PDBx/mmCIF reports are easier to interpret. They contain a high-level summary and offer easier access to residue-level information. Data ... |
[wwPDB] New Publication: PDBx/mmCIF Ecosystem ... Molecular Biology's special issue on Computational Resources for Molecular Biology 2022 A new article by the wwPDB and the PDBx/mmCIF Working Group describes ... |
[wwPDB] Resources for Supporting the Extended PDB ID Format (pdb_00001abc) ... phase progresses, more training resources will be added to this page. Additionally, a PDB “beta” archive will be provided during the transition phase in 2026 ... |
PDBj luncheon seminar at the 55th Annual Meeting of the Biophysical Society of Japan, September 21, 2017 ... University) "Situation, utilization and visualization of cryo-EM structure data" ※ Please take a numbered ticket (first come, first served) ahead at the reception counter on ... |
eF-seek eF-seek is a web server to search for the similar ligand binding sites for the ... |
On 17th Nov (Sat), we exhibit a booth at the event \ Co-Creation Bureau, Osaka University "Enjoy with Osaka Univ." In this event, we exhibit booths and experience corners to introduce various study, result, and resources of Osaka University in the event site. From children to adults, various people can ... |
[wwPDB] PDB Entries with Novel Ligands Now Distributed Only in PDBx/mmCIF and PDBML File Formats ... legacy PDB file format (see previous announcement). In addition, wwPDB has reserved a set of CCD IDs: 01 - 99, DRG, INH, LIG that will never ... |
Privacy Policy ... service) Management of Personal Information We manage your personal information strictly in a safe environment. If you have any questions, please contact us via the ... |
COVID-19 featured content has been relased. ... entries directly related to the Novel Coronavirus disease (COVID-19) which is a serious threat to people all over the world. 【COVID-19 featured content ... |