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News on 2007-12-20

... via rsync is started. We have started to provide remediated PDB archive via rsync protocol. Rsync is a software which synchronizes files ... transfer using delta encoding when appropriate. Detailed information for PDB archive service is available from ...

News on 2012-10-04

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[wwPDB] Biocurator Milestone: >10,000 Depositions Processed

... wwPDB biocurator Dr. Brian Hudson on processing over 10,000 PDB depositions! Dr. Hudson received his PhD in Chemistry from the ... X-ray crystallography and cryo-electron microscopy. He has joined PDB in 2010 and has established himself as a highly qualified ...

[wwPDB] Biocurator Milestone: >10,000 Depositions Processed

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News on 2008-12-08

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[wwPDB] Additional EM map validation now available through OneDep

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Functional annotation example

... At the time the structure was solved, there were no PDB entries with significant sequence homology, however conservation and geometry of ... pathway. Currently, the closest match to 1uan in the PDB is 2ixd, a putative deacetylase from Bacillus cereus that was ...

Rest interface examples

... . import urllib, json url = "https://pdbj.org/rest/newweb/search/pdb" params = "rdate_after=2014-01-01&method=1&res_max=1 ... the exact same query for the Related PDB entries tab. The script searches for all related PDB entries for a given chem_comp id ...

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News on 2011-07-13

... data (v4.0). Please download the newest version from here. PDB Archive Version 4.0 has been released on July 13, 2011. ... wwPDB has released the new version of the PDB data, which reflects the review and resulting changes and corrections. ...

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Derived databases

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News on 2010-08-19

... easily reviewed and shared by depositors. As these PDB validation reports provide an assessment of structure quality ... further develop our data deposition and processing procedures. PDB validation reports are already required by the International Union ...

[wwPDB] More than 1,000 SARS-CoV-2 Coronavirus Protein Structures Available

... high-resolution crystal structure of the coronavirus main protease (PDB 6lu7), was released early in the pandemic on February 5 ... discovery and reuse to combat infection. Open access to PDB structures has already enabled design of effective vaccines against ...

RDB Query Builder

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[wwPDB] Enhanced Collection of Starting Models

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[wwPDB] Biocurator Milestone: >10,000 Depositions Processed

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News on 2007-12-12

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[wwPDB] Biocurator Milestone: >10,000 Depositions Processed

... China with expertise in macromolecular crystallography and joined the PDB after his postdoctoral training on structural and functional studies ... Yuhe Liang During his 10-year career at RCSB PDB, he has committed his extensive scientific expertise and ...

Obtain the PDBID + ChainID (auth_asym_id) of the entries containing the sequence \

... aaseq, which includes all the sequence information in each PDB entry. Element Contents entity_src_nat The biological ... summary.aaseq The value that is concatenated all the sequence in each PDB entry. Tags - Use the digest table "brief_summary" - ...

COVID-19 featured content

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