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We'll hold a luncheon seminar at the 27th Biophysical Society of Taiwan

We will hold a luncheon seminar on Thursday, May 18, 2023 at the 27th Biophysical Society ...

PDB Reaches a New Milestone: 100,000+ Entries ( wwPDB News )

PDB Reaches a New Milestone: 100,000+ Entries (wwPDB News)

The Road to 100,000 Entries: Building a Community Resource ( wwPDB News )

The Road to 100,000 Entries: Building a Community Resource (wwPDB News)

The 12th AsCA will be held in Hong Kong from 7 to 10 December. Haruki Nakamura, Head of PDBj will give a poster presentation to introduce PDBj's web services and our latest activities.

... the Protein Data Bank (PDB)". Haruki Nakamura, Head of PDBj, will give a poster presentation to introduce PDBj's web services and our latest activities ...

The wwPDB is going to start to use a new standard format, PDBx/mmCIF in 2014, replacing the legacy \

The wwPDB is going to start to use a new standard format, PDBx/mmCIF in 2014, replacing the legacy "PDB format" that has been used since nineteen-seventies. The details are shown in the Web page for the new standard format.

[wwPDB] PDB-Dev: A Prototype System for Integrative/Hybrid Structural Models announced in Structure

PDB-Dev: A Prototype System for Integrative/Hybrid Structural Models announced in Structure (wwPDB News)

I have a problem with viewing Website on my Firefox browser. -FAQ

Due to a styling bug introduced in Firefox 52.0.x, all the pull down ...

Data Management: A global coalition to sustain core data ( wwPDB News )

Data Management: A global coalition to sustain core data (wwPDB News)

[wwPDB] Access Improved Carbohydrate Data at the PDB

... PDB structures Detailed information about this project, including a list of remediated PDB entries, is available at ... the February 2020 announcement. The wwPDB has created a new ‘branched’ entity representation for polysaccharides, describing all ...

structural domain

... secondary structure and tertiary structure. For single domain structures, a structural domain can be thought of as being equivalent to ... SCOP and CATH databases which give domain definitions for a large number of PDB entries using rather well accepted ...

[wwPDB] Prototype of PDB NextGen Archive now available

... (SIFTS) project (https://www.ebi.ac.uk/pdbe/docs/sifts/), a service developed and maintained by the PDBe and UniProt teams at EMBL ... ftp-nextgen.pdbj.org Data are structured based on entry ID with a two letter hash code, ‘third from last character’ and ‘ ...

[wwPDB] Paper Published on CryoEM Archiving and Validation Recommendations

... for deposition and validation of cryoEM structures, with a focus on single-particle analysis and setting community recommendations ... of these recommendations have already been implemented, such as a three-tiered strategy powered by the Validation Analysis ( ...

[wwPDB] Time-stamped Copies of PDB and EMDB Archives

... the PDB Core Archive as of January 2, 2023 is available. A snapshot of the PDB Core archive (ftp://ftp.wwpdb.org, https:// ... file was modified. The snapshot of PDB Core Archive is 1086 GB. A snapshot of the EMDB Core archive (ftp://ftp.ebi.ac.uk/pub ...

[wwPDB] Time-stamped Copies of PDB and EMDB Archives

... been added to ftp://snapshots.wwpdb.org and ftp://snapshots.pdbj.org. A snapshot of the PDB Core archive (ftp://ftp.wwpdb.org) as ... was modified. The snapshot of PDB Core Archive is 923 GB. A snapshot of the EMDB Core archive (ftp://ftp.ebi.ac.uk/pub ...

[wwPDB] EMDB policy and procedures document now available

A comprehensive policy and procedures document for the EMDB archive has been ... policy recommends for single-particle depositions to include a primary map (as shown in the accompanying publication), a raw map (unmasked, unfiltered, unsharpened) and unmasked ...

News on 2006-10-14

A new version of Structure Navigator-RT is provided so as to operate a Web service with the recent Grid technology: Opal-OP.

[wwPDB] Job Posting: Founding Director, Protein Data Bank China

A job is opening for a founding director of Protein Data Bank China (PDBc), with the primary task of establishing structure archiving activities in China. (wwPDB news)

[wwPDB] Time-stamped Copies of PDB and EMDB Archives

A snapshot of the PDB Core archive (ftp://ftp.wwpdb.org) as of ... file was modified. The snapshot of PDB Core archive is 575 GB. A snapshot of the EMDB Core archive (ftp://ftp.ebi.ac.uk/pub ...

[wwPDB] Remediation of crystal structures deposited in non-standard coordinate frames

... 268 structure entries deposited to PDB in a non-standard coordinate frame or space group setting have been re-versioned ...

[wwPDB] Time-stamped Copies of wwPDB Archives

A snapshot of the PDB Core archive (ftp://ftp.wwpdb.org) as of ... file was modified. The snapshot of PDB Core archive is 822 GB. A snapshot of the EMDB Core archive (ftp://ftp.ebi.ac.uk/pub ...

[wwPDB] Enhanced Validation of Small-Molecule Ligands and Carbohydrates

A new article in Structure describes new features, including branched representations and 2D ...

[wwPDB] Paper Published on NextGen Archive

A new paper describes how the recently-announced NextGen Archive provides centralized access ...

[wwPDB] Announcement of mandatory mmCIF submission published in Acta Cryst D

A new publication in Acta Cryst D announces the mandatory submission of PDBx/mmCIF to the PDB for crystallographic depositions. (wwPDB news)

[wwPDB] Enhanced Collection of Starting Models

A new PDBx/mmCIF category, _pdbx_initial_refinement_model has been introduced to ...

[wwPDB] Preprint Published on NextGen Archive

A new paper describes how the recently-announced NextGen Archive provides centralized access ...

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PDB entries from 2024-07-17

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