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[wwPDB] PDBx/mmCIF data files to include PI information

... , vaccines and neutralizing antibodies. When researchers analyze existing PDB structures, such as working on a similar structure, ... by scientific journals. The dated acceptance of these PDB Terms and Conditions described above will be captured within ...

[wwPDB] Improved EM validation with Q-score

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Theoretical Models

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[wwPDB] wwPDB EM Validation Reports Now Publicly Available

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[wwPDB] Distributing PDBx/mmCIF-Formatted Assembly Files

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[wwPDB] Distributing PDBx/mmCIF-Formatted Assembly Files

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About Asymmetric unit and Biological unit

... unit (i.e. non-crystallographic asymmetric unit) to the PDB. To reconstruct the biological assembly, non-crystallographic symmetry operations ... : non-large structures which don't excess the PDB format limitation PDB format (as in the past for a while) ...

[wwPDB] From today: Mandatory PDBx/mmCIF format file submission for MX depositions

... /mmCIF is now the only format accepted for deposition of PDB structures resulting from macromolecular crystallography (MX), including X-ray, ... metadata supported by PDBx/mmCIF, compared to the legacy PDB format. PDB entries with 100,000 or more atoms, and ...

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PDBML-extatom

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GIRAF

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10,000 NMR structure milestone reached

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News on 2012-09-20

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[wwPDB] Modifications to support for SHEET and ligand SITE records in June 2021

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[wwPDB] Obituary for John Westbrook

... macromolecular machines, such as the ribosome, as single PDB structures (instead of split entries with atomic coordinates distributed ... I/HM structures, currently stored in the prototype PDB-Dev archive (pdb-dev.wwpdb.org), presented new challenges for data ...

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Data Format

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[wwPDB] ls-lR index file to be removed July 12, 2023

... JSON format, and can be found under the new /pdb/holdings/ archive tree. The inventory lists provided include: - ... - all_removed_entries.json.gz: a list of obsoleted PDB entries including information for entry authors, entry title, release date ...

About Functional Details page

... defined by the authors, which appear in the original PDB flat files, automatically regularized after sequence alignment between the ... sequences in SwissProt/UniProt data and PDB data. 6) Catalytic Information from CSA The catalytic ...

SeSAW Tutorial

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News on 2009-01-23

... before remediation) ftp://snapshots.pdbj.org/20070731/ We will keep ftp://pdb.protein.osaka-u.ac.jp/v3/ as a symbolic link to ... . We will announce the release date for version 3.15 PDB archive when it will be confirmed. Sorry for your inconvenience ...

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