| Format Conversion: Do you provide a service to convert the file format between PDB format and PDBx/mmCIF? - FAQ Q) Format Conversion: Do you provide a service to convert the file format between PDB format and PDBx/mmCIF? A) By using our Format Conversion web service, you can convert the file format between PDB format and PDBx/mmCIF. [Back to the question list] |
| Mail to pdbj-master Please refer to the FAQ page. If you cannot find the answers to your questions, please contact us using the question form below. Please include the service name in your Message or Subject if you have any problems or questions about PDBj services. |
| Tutorial for OneDep deposition service - FAQ Q) Is any tutorial for OneDep deposition service available? A) Please refer to tutorial page at PDBj site. Other information regarding deposition is provided at Data Deposition Information page. [Back to Questions] |
| Previous workshop PDBj luncheon seminar at the 55TH ANNUAL MEETING OF THE BIOPHYSICAL OF JAPAN, September 21, 2017 - 1：Genji Kurisu (Institute for Protein Research (IPR), Osaka University) "Recent activities of PDBj and wwPDB" - 2：Akira Kinjo (Institute for Protein ... |
| [wwPDB] Implementation of PDB Entry Versioning and Better Revision History to Improve PDB Archive Management Implementation of PDB Entry Versioning and Better Revision History to Improve PDB Archive Management (wwPDB news) |
| [wwPDB] Donate Today to Support the PDB's Spirit of Openness, Cooperation and Education The wwPDB Foundation raises funds from Individual and Corporate sponsors in support of the outreach activities of the wwPDB crucial to the future of the PDB archive, including workshops, symposia, and advisory meetings. See the wwPDB news for more details. |
| PDBj luncheon seminar at the 55th Annual Meeting of the Biophysical Society of Japan, September 21, 2017 ＜PDBj luncheon seminar＞ PDBj luncheon seminar will be held at The 55TH ANNUAL MEETING OF THE BIOPHYSICAL SOCIETY OF JAPAN . Date September 21 (Thu), 2017 11：45－12：35 Place Kurokami North Campus, Kumamoto University Room I （Room E305 , General ... |
| [wwPDB] PDB-Dev: A Prototype System for Integrative/Hybrid Structural Models announced in Structure PDB-Dev: A Prototype System for Integrative/Hybrid Structural Models announced in Structure (wwPDB News) |
| [wwPDB] Poster Prize Awarded at IUCr 2017 Poster Prize Awarded at IUCr 2017 (wwPDB News) |
| Search PDB entry search (PDBj Mine) PDBj Mine is a new generic interface to search PDB entries by PDB ID and keyword etc. See also Basic Usage. URL: http://pdbj.org/mine/ Advanced Search (PDBj Mine) In Advanced Search, you can use combination of ... |
| Services and Softwares Yorodumi Yorodumi is a website to easily watch, move, rotate, learn, and enjoy 3D structures of biological molecules. See Yorodumi Docs for more details. URL: https://pdbj.org//yorodumi/ |
| EM Navigator URL: https://pdbj.org//emnavi/?lang=en EM Navigator is Electron microscopy structure browser. See Yorodumi Docs for more details. - - |
| PDBj Format conversion service now supports Chem Comp file. PDBx/mmCIF Conversion service provided by PDBj now supports Chemical Component files in mmCIF format. The Chem Comp file in mmCIF format is converted to PDB format file. |
| [wwPDB] wwPDB Events at IUCr (August 21-28) wwPDB Events at IUCr (August 21-28) (wwPDB News) |
| Rest interface examples Example of curl An example of the curl command used in UNIX like systems to get structural data file of HEM chemical component in the mmCIF format. $ curl -F "id=HEM" -F "format=mmcif" https://pdbj.org/rest/downloadCOMPfile > HEM.cif.gz % Total % ... |
| [wwPDB] Better Management of PDB Archive with File Versioning and Revision History Better Management of PDB Archive with File Versioning and Revision History (wwPDB News) |
| JBI (Japan alliance for Bioscience Information) portal site is now open. PDBj has launched the JBI (Japan alliance for Bioscience Information) portal site (http://jbioinfo.jp/) in collaboration with National Bioscience Database Center (NBDC)/JST, Database Center for Life Science (DBCLS)/Joint Support-Center for Data Science ... |
| [wwPDB] 5 Easy Steps to PDB Deposition 5 Easy Steps to PDB Deposition (wwPDB News) |
| [wwPDB] Freezing the PDB Format Freezing the PDB Format (wwPDB News) |
| [wwPDB] Enriched PDB Structure Entry Files Conforming to OneDep Data Standards Are Now Available for Testing Enriched PDB Structure Entry Files Conforming to OneDep Data Standards Are Now Available for Testing (wwPDB News) |
| [wwPDB] Revise Your Structure Without Changing the PDB Accession Code and Related Changes to the FTP Archive Revise Your Structure Without Changing the PDB Accession Code and Related Changes to the FTP Archive (wwPDB News) |
| [wwPDB] Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive (wwPDB News) Impact on PDBj services Mine2 RDB was upgraded to pdbx-v50-v5.282. Please refer to the past news regarding impact of V5.0 upgrade on PDBj services ... |
| CIF --> JSON converter This tool can load a PDBx/mmCIF file and convert it to PDBx/mmJSON. Besides PDBx/mmCIF, other STAR formatted files should also work. Select a file below and then click on "Convert". Note that the files will not be uploaded to the server, but will be ... |
| Impact of PDBx/mmCIF v5 upgrade on PDBj services On July 12 2017, the PDB entries in the FTP will be upgraded to the new v5 dictionary ( http://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Index/) (wwPDB News). Since this will be a major upgrade, some services will be affected. The following services ... |
| PDBMLplus schema file About PDBMLplus PDBMLplus_v40.xsd (XML Schema) Display (3.55MB) Download (gzipped 297KB) PDBMLplus_v42.xsd (XML Schema) Display (3.55MB) Download (gzipped 297KB) View with tree viewer |
Info pages: 541 results
✖
225946
PDB entries from 2024-10-09
