| a tutorial about PDBj search services -FAQ Q) Is there a tutorial available on how to use various search services at PDBj? A) Click on the "Help" or "?" link in the Search panel from the left menu to go to PDBj Help page. The page summarizes various PDBj search services and their links to each ... |
| Coming Soon: New NMR and 3DEM Validation Reports for Archived PDB Structures ( wwPDB News ) Coming Soon: New NMR and 3DEM Validation Reports for Archived PDB Structures (wwPDB News) |
| downloading PDB data in various formats -FAQ Q) How can I download PDB data with specified format: PDB, mmCIF or XML, using the FTP protocol? A) The PDB data in PDB, mmCIF or XML format is available at: ftp://ftp.pdbj.org/pub/pdb/data/structures/divided/ - pdb/ --- PDB format - mmCIF/ --- mmCIF ... |
| URL for downloading of PDB data -FAQ Q) What are the URLs to download PDB files using FTP or rsync protocol? A) Using FTP protocol, you can download files from the following site at: ftp://ftp.pdbj.org/ Please see PDB Archive/Snapshot Archivepage for more information about rsync protocol ... |
| The new version (4.5) of jV molecular viewer provided by PDBj is now available. From this version, it can load and save in mmCIF format for small molecules (chem_comp mmCIF). The new version (4.5) of jV molecular viewer provided by PDBj is now available. From this version, it can load and save in mmCIF format for small molecules (chem_comp mmCIF). |
| provision of PDB data in the form of CD or DVD -FAQ Q) Is it possible to get a CD or DVD which includes all PDB data? A) Unfortunately, we terminated providing PDB data on CD-ROM in 2004. You can download all PDB data using the rsync protocol. Please see PDB Archive/Snapshot Archivepage for more ... |
| Links to Molmil viewer do not appear. / Molmil does not work. This issue occurs in case your environment does not seem to support WebGL. First read Using PDBj's web interface and check your browser's version. In case your browser does not support WebGL, please upgrade it to the latest version or use an alternative ... |
| The OS crashes when the Enable button on the Molmil page is clicked. -FAQ The drivers supplied with the OS can cause the system to crash depending on the hardware specifications when Molmil is executed. We advise users to use Molmil in another environment in case they experience problems. If possible please upgrade to the latest ... |
| Molmil viewer no longer works. It is possible that this issue is caused by a bug in your graphics driver if Molmil suddenly stops working on a system where it used to work before.1 Please read Using PDBj's web interface and confirm whether your browser supports WebGL. In case your ... |
| Coming soon: Updated X-ray Validation Reports for Archived PDB Structures ( wwPDB News ) Coming soon: Updated X-ray Validation Reports for Archived PDB Structures (wwPDB News) |
| wwPDB Deposition Annotation System Now Available for NMR and 3DEM Structures ( wwPDB News ) wwPDB Deposition & Annotation System Now Available for NMR and 3DEM Structures (wwPDB News) |
| news on 2016-1-8 jV 4.4.5, signed with updated certification, has released. The certification used to sign jV 4.4.4 will expire on Jan. 21, 2016. After expired, it doesn't work as applet. So we recommend for all administrator of web servers that include jV applet pages to ... |
| Protein Globe The Protein Globe service has been discontinued from January 2016. The Protein Globe is a graphical interface to the PDBj and other services. - Summary - What it is - Prerequisite - How to use - Caveats - The Globe is only semi-quantitative. The ... |
| The Protein Globe service has been discontinued from January 2016. The Protein Globe service has been discontinued from January 2016. |
| News on 2015-12-18 NBDC portal. The user can search the wwPDB/RDF data along with other data resources through a SPARQL endpoint. See RDF Portal for NBDC for more details." /> The wwPDB/RDF data are now available from the NBDC portal. The user can search the wwPDB/RDF data ... |
| Integrate Molmil It is possible to integrate molmil on your own website. The following example is a simple webpage including the required JavaScript to load and initialize molmil: |
| About Asymmetric unit and Biological unit Introduction The atomic coordinate data in PDB is "asymmetric unit", which includes minimum essential. It doesn't always mean actual functional unit in organisms. The functional structures are called "biological unit", some of them are equal to the ... |
| The static version of the PDBj web pages for old-type browsers has been updated. The static version of the PDBj web pages for old-type browsers has been updated. |
| wwPDB New Deposition and Annotation System Please refer to wwPDB New Deposition and Annotation System at wwPDB site. |
| wwPDB New Deposition and Annotation System - FAQ Please refer to wwPDB New Deposition and Annotation System-Frequently Asked Questions at wwPDB site. |
| News on 2015-10-2 New version of jV (4.4.4), fixed the bug involved in the polygon display in Windows, was released. http://pdbj.org/jv/ |
| The wwPDB Symposium \ The wwPDB Symposium "Integrative Structural Biology with Hybrid Methods" will be held at Osaka University Hall on October 3, 2015 (more...) |
| Phased PDB Release Process ( wwPDB News ) Phased PDB Release Process (wwPDB News) |
| Data correspondences between the PDB and CSD archives now available ( wwPDB News ) Data correspondences between the PDB and CSD archives now available (wwPDB News) |
| confidentiality of deposition data - FAQ Q) Is there any chance that the deposited information could leak out from the PDB before release? A) The deposited data is managed under strict security constraints during the annotation process. There is no need for concern regarding data leaking out. ... |
Info pages: 547 results
✖
227344
PDB entries from 2024-11-13
