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3E1I
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BU of 3e1i by Molmil
Crystal Structure of BbetaD432A Variant Fibrinogen Fragment D with the Peptide Ligand Gly-His-Arg-Pro-amide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Fibrinogen alpha chain, ...
Authors:Bowley, S.R, Lord, S.T.
Deposit date:2008-08-04
Release date:2009-01-13
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Fibrinogen variant BbetaD432A has normal polymerization but does not bind knob "B".
Blood, 113, 2009
1PKR
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BU of 1pkr by Molmil
THE STRUCTURE OF RECOMBINANT PLASMINOGEN KRINGLE 1 AND THE FIBRIN BINDING SITE
Descriptor: CHLORIDE ION, PLASMINOGEN
Authors:Wu, T.-P, Tulinsky, A.
Deposit date:1993-08-03
Release date:1994-01-31
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:The structure of recombinant plasminogen kringle 1 and the fibrin binding site.
Blood Coagulation Fibrinolysis, 5, 1994
1EI3
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BU of 1ei3 by Molmil
CRYSTAL STRUCTURE OF NATIVE CHICKEN FIBRINOGEN
Descriptor: FIBRINOGEN
Authors:Yang, Z, Mochalkin, I, Veerapandian, L, Riley, M, Doolittle, R.F.
Deposit date:2000-02-23
Release date:2000-05-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (5.5 Å)
Cite:Crystal structure of native chicken fibrinogen at 5.5-A resolution.
Proc.Natl.Acad.Sci.USA, 97, 2000
1N8E
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BU of 1n8e by Molmil
Fragment Double-D from Human Fibrin
Descriptor: Fibrin alpha/alpha-E chain, Fibrin beta chain, Fibrin gamma chain
Authors:Yang, Z, Pandi, L, Doolittle, R.F.
Deposit date:2002-11-20
Release date:2003-01-07
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:The Crystal Structure of Fragment Double-D from Cross-Linked Lamprey Fibrin Reveals Isopeptide Linkages across an Unexpected D-D Interface
Biochemistry, 41, 2002
1N73
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BU of 1n73 by Molmil
Fibrin D-Dimer, Lamprey complexed with the PEPTIDE LIGAND: GLY-HIS-ARG-PRO-AMIDE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Fibrin alpha-1 chain, ...
Authors:Yang, Z, Pandi, L, Doolittle, R.F.
Deposit date:2002-11-12
Release date:2003-01-07
Last modified:2024-12-25
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The Crystal structure of fragment double-D from cross-linked lamprey fibrin reveals isopeptide linkages across an unexpected D-D interface
Biochemistry, 41, 2002
2XNY
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BU of 2xny by Molmil
A fragment of streptococcal M1 protein in complex with human fibrinogen
Descriptor: FIBRINOGEN ALPHA CHAIN, FIBRINOGEN BETA CHAIN, FIBRINOGEN GAMMA CHAIN, ...
Authors:Macheboeuf, P, Y Fu, C, Zinkernagel, A.S, Johnson, J.E, Nizet, V, Ghosh, P.
Deposit date:2010-08-06
Release date:2011-04-13
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (7.5 Å)
Cite:Streptococcal M1 Protein Constructs a Pathological Host Fibrinogen Network
Nature, 472, 2011
2XNX
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BU of 2xnx by Molmil
BC1 fragment of streptococcal M1 protein in complex with human fibrinogen
Descriptor: FIBRINOGEN ALPHA CHAIN, FIBRINOGEN BETA CHAIN, FIBRINOGEN GAMMA CHAIN, ...
Authors:Macheboeuf, P, Y Fu, C, Zinkernagel, A.S, Johnson, J.E, Nizet, V, Ghosh, P.
Deposit date:2010-08-06
Release date:2011-04-13
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Streptococcal M1 Protein Constructs a Pathological Host Fibrinogen Network
Nature, 472, 2011
3BVH
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BU of 3bvh by Molmil
Crystal Structure of Recombinant gammaD364A Fibrinogen Fragment D with the Peptide Ligand Gly-Pro-Arg-Pro-Amide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, 4-mer peptide GPRP, CALCIUM ION, ...
Authors:Bowley, S.R, Merenbloom, B.K, Betts, L, Okumura, N, Heroux, A, Gorkun, O.V, Lord, S.T.
Deposit date:2008-01-07
Release date:2008-09-02
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Polymerization-defective fibrinogen variant gammaD364A binds knob "A" peptide mimic.
Biochemistry, 47, 2008
1DEQ
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BU of 1deq by Molmil
THE CRYSTAL STRUCTURE OF MODIFIED BOVINE FIBRINOGEN (AT ~4 ANGSTROM RESOLUTION)
Descriptor: FIBRINOGEN, FIBRINOGEN (ALPHA CHAIN), FIBRINOGEN (BETA CHAIN), ...
Authors:Brown, J.H, Volkmann, N, Jun, G, Henschen-Edman, A.H, Cohen, C.
Deposit date:1999-11-15
Release date:2000-02-02
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:The crystal structure of modified bovine fibrinogen.
Proc.Natl.Acad.Sci.USA, 97, 2000
1JY2
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BU of 1jy2 by Molmil
Crystal Structure of the Central Region of Bovine Fibrinogen (E5 fragment) at 1.4 Angstroms Resolution
Descriptor: FIBRINOGEN ALPHA CHAIN, FIBRINOGEN BETA CHAIN, FIBRINOGEN GAMMA-B CHAIN
Authors:Madrazo, J, Brown, J.H, Litvinovich, S, Dominguez, R, Yakovlev, S, Medved, L, Cohen, C.
Deposit date:2001-09-10
Release date:2001-10-17
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of the central region of bovine fibrinogen (E5 fragment) at 1.4-A resolution.
Proc.Natl.Acad.Sci.USA, 98, 2001
1JY3
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BU of 1jy3 by Molmil
Crystal Structure of the Central Region of Bovine Fibrinogen (E5 Fragment) at 1.4 Angstroms Resolution
Descriptor: FIBRINOGEN ALPHA CHAIN, FIBRINOGEN BETA CHAIN, FIBRINOGEN GAMMA-B CHAIN
Authors:Madrazo, J, Brown, J.H, Litvinovich, S, Dominguez, R, Yakovlev, S, Medved, L, Cohen, C.
Deposit date:2001-09-10
Release date:2001-10-17
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the central region of bovine fibrinogen (E5 fragment) at 1.4-A resolution.
Proc.Natl.Acad.Sci.USA, 98, 2001
2BAF
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BU of 2baf by Molmil
Bovine Fibrinogen alpha-C Domain
Descriptor: Fibrinogen alpha chain
Authors:Burton, R.A.
Deposit date:2005-10-14
Release date:2006-02-28
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:Identification of an Ordered Compact Structure within the Recombinant Bovine Fibrinogen alphaC-Domain Fragment by NMR.
Biochemistry, 45, 2006
2JOR
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BU of 2jor by Molmil
NMR Solution Structure, Stability, and Interaction of the Recombinant Bovine Fibrinogen alphaC-Domain Fragment
Descriptor: Fibrinogen alpha chain
Authors:Burton, R.A, Tsurupa, G, Roy, H, Nico, T, Leonid, M.
Deposit date:2007-03-20
Release date:2007-08-07
Last modified:2024-11-06
Method:SOLUTION NMR
Cite:NMR Solution Structure, Stability, and Interaction of the Recombinant Bovine Fibrinogen alphaC-Domain Fragment
Biochemistry, 46, 2007
9Q35
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BU of 9q35 by Molmil
Fibrinogen domain dimer from human Fibrinogen-like protein 1 (FGL-1)
Descriptor: 1,2-ETHANEDIOL, Fibrinogen-like protein 1
Authors:Nyovanie, S, Patskovsky, Y, Krogsgaard, M.
Deposit date:2025-08-15
Release date:2025-09-24
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Fibrinogen domain dimer from human Fibrinogen-like protein 1 (FGL-1)
To Be Published
1UCY
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BU of 1ucy by Molmil
THROMBIN COMPLEXED WITH FIBRINOPEPTIDE A ALPHA (RESIDUES 7-19). THREE COMPLEXES, ONE WITH EPSILON-THROMBIN AND TWO WITH ALPHA-THROMBIN
Descriptor: FIBRINOPEPTIDE A-ALPHA, THROMBIN
Authors:Martin, P, Edwards, B.
Deposit date:1996-08-30
Release date:1997-02-12
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Bovine thrombin complexed with an uncleavable analog of residues 7-19 of fibrinogen A alpha: geometry of the catalytic triad and interactions of the P1', P2', and P3' substrate residues.
Biochemistry, 35, 1996
1R19
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BU of 1r19 by Molmil
Crystal Structure Analysis of S.epidermidis adhesin SdrG binding to Fibrinogen (Apo structure)
Descriptor: fibrinogen-binding protein SdrG
Authors:Ponnuraj, K, Bowden, M.G, Davis, S, Gurusiddappa, S, Moore, D, Choe, D, Xu, Y, Hook, M, Narayana, S.V.L.
Deposit date:2003-09-23
Release date:2003-10-28
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:A "dock, lock and latch" Structural Model for a Staphylococcal Adhesin Binding to Fibrinogen
Cell(Cambridge,Mass.), 115, 2003
2Z4E
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BU of 2z4e by Molmil
Crystal Structure of D-Dimer from Human Fibrin Complexed with Gly-His-Arg-Pro-Tyr-amide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Doolittle, R.F, Pandi, L.
Deposit date:2007-06-16
Release date:2007-10-23
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Probing the beta-chain hole of fibrinogen with synthetic peptides that differ at their amino termini
Biochemistry, 46, 2007
3HUS
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BU of 3hus by Molmil
Crystal structure of recombinant gamma N308K fibrinogen fragment D with the peptide ligand Gly-Pro-Arg-Pro-amide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Fibrinogen alpha chain, ...
Authors:Lord, S.T, Bowley, S.R, Okumura, N.
Deposit date:2009-06-15
Release date:2009-08-18
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (3.04 Å)
Cite:Impaired protofibril formation in fibrinogen gammaN308K is due to altered D:D and "A:a" interactions.
Biochemistry, 48, 2009
2Q9I
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BU of 2q9i by Molmil
Crystal Structure of D-Dimer from Human Fibrin Complexed with Met-His-Arg-Pro-Tyr-amide.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Fibrin B Knob (GHRPam), ...
Authors:Doolittle, R.F, Pandi, L.
Deposit date:2007-06-12
Release date:2007-12-11
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Probing the beta-chain hole of fibrinogen with synthetic peptides that differ at their amino termini
Biochemistry, 46, 2007
3H32
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BU of 3h32 by Molmil
Crystal structure of D-dimer from human fibrin complexed with Gly-His-Arg-Pro-Tyr-amide
Descriptor: CALCIUM ION, Fibrin B knob pentapeptide, Fibrinogen alpha chain, ...
Authors:Doolittle, R.F, Pandi, L.
Deposit date:2009-04-15
Release date:2009-07-28
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Two families of synthetic peptides that enhance fibrin turbidity and delay fibrinolysis by different mechanisms.
Biochemistry, 48, 2009
1N86
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BU of 1n86 by Molmil
Crystal structure of human D-dimer from cross-linked fibrin complexed with GPR and GHRPLDK peptide ligands.
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, CALCIUM ION, Fibrin alpha/alpha-E chain, ...
Authors:Yang, Z, Pandi, L, Doolittle, R.F.
Deposit date:2002-11-19
Release date:2003-01-07
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The crystal structure of fragment double-D from cross-linked lamprey fibrin reveals isopeptide linkages across an unexpected D-D interface.
Biochemistry, 41, 2002
3FIB
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BU of 3fib by Molmil
RECOMBINANT HUMAN GAMMA-FIBRINOGEN CARBOXYL TERMINAL FRAGMENT (RESIDUES 143-411) BOUND TO CALCIUM AT PH 6.0: A FURTHER REFINEMENT OF PDB ENTRY 1FIB, AND DIFFERS FROM 1FIB BY THE MODELLING OF A CIS PEPTIDE BOND BETWEEN RESIDUES K338 AND C339
Descriptor: CALCIUM ION, FIBRINOGEN GAMMA CHAIN RESIDUES
Authors:Pratt, K.P, Cote, H.C.F, Chung, D.W, Stenkamp, R.E, Davie, E.W.
Deposit date:1997-07-14
Release date:1997-09-17
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The primary fibrin polymerization pocket: three-dimensional structure of a 30-kDa C-terminal gamma chain fragment complexed with the peptide Gly-Pro-Arg-Pro.
Proc.Natl.Acad.Sci.USA, 94, 1997
1M1J
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BU of 1m1j by Molmil
Crystal structure of native chicken fibrinogen with two different bound ligands
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Yang, Z, Kollman, J.M, Pandi, L, Doolittle, R.F.
Deposit date:2002-06-19
Release date:2002-06-26
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of Native Chicken Fibrinogen at 2.7 A Resolution
Biochemistry, 40, 2001
2FIB
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BU of 2fib by Molmil
RECOMBINANT HUMAN GAMMA-FIBRINOGEN CARBOXYL TERMINAL FRAGMENT (RESIDUES 143-411) COMPLEXED TO THE PEPTIDE GLY-PRO-ARG-PRO AT PH 6.0
Descriptor: CALCIUM ION, FIBRINOGEN, GLY-PRO-ARG-PRO
Authors:Pratt, K.P, Cote, H.C.F, Chung, D.W, Stenkamp, R.E, Davie, E.W.
Deposit date:1997-06-03
Release date:1997-10-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:The primary fibrin polymerization pocket: three-dimensional structure of a 30-kDa C-terminal gamma chain fragment complexed with the peptide Gly-Pro-Arg-Pro.
Proc.Natl.Acad.Sci.USA, 94, 1997
1FZC
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BU of 1fzc by Molmil
CRYSTAL STRUCTURE OF FRAGMENT DOUBLE-D FROM HUMAN FIBRIN WITH TWO DIFFERENT BOUND LIGANDS
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Everse, S.J, Spraggon, G, Veerapandian, L, Riley, M, Doolittle, R.F.
Deposit date:1998-05-19
Release date:1998-10-14
Last modified:2024-12-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of fragment double-D from human fibrin with two different bound ligands.
Biochemistry, 37, 1998

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