PDB: 77 件ウェブページステータス検索Chemie searchBIRD

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8FOM	Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Nguyen, H.A, Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M. 登録日 2023-01-02 公開日 2023-03-29 最終更新日 2023-04-26 実験手法 X-RAY DIFFRACTION (3.58 Å) 主引用文献 Structural basis for reduced ribosomal A-site fidelity in response to P-site codon-anticodon mismatches. J.Biol.Chem., 299, 2023
8FON	Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Nguyen, H.A, Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M. 登録日 2023-01-02 公開日 2023-03-29 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (3.64 Å) 主引用文献 Structural basis for reduced ribosomal A-site fidelity in response to P-site codon-anticodon mismatches. J.Biol.Chem., 299, 2023
4WWW	Crystal structure of the E. coli ribosome bound to CEM-101 分子名称: (3aS,4R,7S,9R,10R,11R,13R,15R,15aR)-1-{4-[4-(3-aminophenyl)-1H-1,2,3-triazol-1-yl]butyl}-4-ethyl-7-fluoro-11-methoxy-3a ,7,9,11,13,15-hexamethyl-2,6,8,14-tetraoxotetradecahydro-2H-oxacyclotetradecino[4,3-d][1,3]oxazol-10-yl 3,4,6-trideoxy-3-(dimethylamino)-beta-D-xylo-hexopyranoside, 16S rRNA, 23S rRNA, ... 著者 Dunkle, J.A, Zhang, W, Cate, J.H.D, Mankin, A.S. 登録日 2014-11-12 公開日 2014-12-24 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Binding and action of CEM-101, a new fluoroketolide antibiotic that inhibits protein synthesis. Antimicrob. Agents Chemother., 54, 2010
4YPB	Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Schureck, M.A, Dunkle, J.A, Maehigashi, T, Dunham, C.M. 登録日 2015-03-12 公開日 2015-10-21 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Defining the mRNA recognition signature of a bacterial toxin protein. Proc.Natl.Acad.Sci.USA, 112, 2015
4YZV	Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Schureck, M.A, Dunkle, J.A, Maehigashi, T, Dunham, C.M. 登録日 2015-03-25 公開日 2015-10-21 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Defining the mRNA recognition signature of a bacterial toxin protein. Proc.Natl.Acad.Sci.USA, 112, 2015
6BZ8	Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M. 登録日 2017-12-22 公開日 2018-11-14 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.74 Å) 主引用文献 Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding. Nucleic Acids Res., 47, 2019
6BZ6	Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M. 登録日 2017-12-22 公開日 2018-11-14 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.18 Å) 主引用文献 Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding. Nucleic Acids Res., 47, 2019
6BZ7	Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M. 登録日 2017-12-22 公開日 2018-11-14 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.68 Å) 主引用文献 Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding. Nucleic Acids Res., 47, 2019
6BUW	Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M. 登録日 2017-12-11 公開日 2018-11-14 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding. Nucleic Acids Res., 47, 2019
6NDK	Structure of ASLSufA6 A37.5 bound to the 70S A site 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Nguyen, H.T, Hoffer, E.D, Dunham, C.M. 登録日 2018-12-13 公開日 2019-02-27 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.64 Å) 主引用文献 Importance of a tRNA anticodon loop modification and a conserved, noncanonical anticodon stem pairing intRNACGGProfor decoding J. Biol. Chem., 294, 2019
6NTA	Modified ASL proline bound to Thermus thermophilus 70S (cognate) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Maehigashi, T, Subaramanian, S, Hong, S, Dunham, C.M. 登録日 2019-01-28 公開日 2020-10-14 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife, 9, 2020
6NUO	Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Subaramanian, S, Hong, S, Maehigashi, T, Dunham, C.M. 登録日 2019-02-01 公開日 2020-10-14 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife, 9, 2020
6NWY	Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Subaramanian, S, Hong, S, Maehigashi, T, Dunham, C.M. 登録日 2019-02-07 公開日 2020-10-14 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife, 9, 2020
6NSH	Modified ASL proline bound to Thermus thermophilus 70S (near-cognate) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Maehigashi, T, Subaramanian, S, Hong, S, Dunham, C.M. 登録日 2019-01-24 公開日 2020-10-14 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.397 Å) 主引用文献 Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife, 9, 2020
6O3M	Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Subaramanian, S, Hong, S, Maehigashi, T, Dunham, C.M. 登録日 2019-02-26 公開日 2020-10-14 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.97 Å) 主引用文献 Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife, 9, 2020
6YFT	Virus-like particle of Wenzhou levi-like virus 1 分子名称: RNA, coat protein 著者 Rumnieks, J, Kalnins, G, Sisovs, M, Lieknina, I, Tars, K. 登録日 2020-03-26 公開日 2020-09-02 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Three-dimensional structure of 22 uncultured ssRNA bacteriophages: Flexibility of the coat protein fold and variations in particle shapes. Sci Adv, 6, 2020
4P6F	Crystal structure of the peptolide 12C bound to bacterial ribosome 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Fagan, C.E, Dunham, C.M. 登録日 2014-03-24 公開日 2014-10-01 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Macrolide-Peptide Conjugates as Probes of the Path of Travel of the Nascent Peptides through the Ribosome. Acs Chem.Biol., 9, 2014
4P70	Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2014-03-25 公開日 2014-08-13 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (3.68 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014
4L71	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2013-06-13 公開日 2014-08-06 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.900001 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014
4L47	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2013-06-07 公開日 2014-08-06 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.220001 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014
4LFZ	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2013-06-27 公開日 2014-08-06 最終更新日 2014-12-10 実験手法 X-RAY DIFFRACTION (3.92000055 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014
4LEL	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2013-06-25 公開日 2014-08-06 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.90000033 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014
4LNT	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2013-07-12 公開日 2014-08-06 最終更新日 2014-12-10 実験手法 X-RAY DIFFRACTION (2.94 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014
4LSK	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2013-07-22 公開日 2014-08-06 最終更新日 2014-12-10 実験手法 X-RAY DIFFRACTION (3.48000622 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014
4LT8	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2013-07-23 公開日 2014-08-06 最終更新日 2014-12-10 実験手法 X-RAY DIFFRACTION (3.14000177 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014

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