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2DD8	Crystal Structure of SARS-CoV Spike Receptor-Binding Domain Complexed with Neutralizing Antibody Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, IGG Heavy Chain, IGG Light Chain, ... Authors: Prabakaran, P, Gan, J.H, Feng, Y, Zhu, Z.Y, Xiao, X.D, Ji, X, Dimitrov, D.S. Deposit date: 2006-01-24 Release date: 2006-04-04 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure of Severe Acute Respiratory Syndrome Coronavirus Receptor-binding Domain Complexed with Neutralizing Antibody J.Biol.Chem., 281, 2006
2DDQ	Crystal Structure of the Fab fragment of a R310 antibody complexed with (R)-HNE-histidine adduct Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, N-ACETYL-1-[(2R,3S,5R)-5-HYDROXY-2-PENTYLTETRAHYDROFURAN-3-YL]-L-HISTIDINE, R310 antibody heavy chain, ... Authors: Ito, S. Deposit date: 2006-02-02 Release date: 2006-07-11 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Bispecific abs against modified protein and DNA with oxidized lipids Proc.Natl.Acad.Sci.Usa, 103, 2006
2G2R	Green-fluorescent antibody 11G10 in complex with its hapten (nitro-stilbene derivative) Descriptor: Green-fluorescent antibody (11G10)-heavy chain, Green-fluorescent antibody (11G10)-light chain, N-(TRANS-4'-NITRO-4-STILBENYL)-N-METHYL-5-AMINO-PENTANOIC ACID, ... Authors: Debler, E.W, Wilson, I.A. Deposit date: 2006-02-16 Release date: 2006-12-05 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.75 Å) Cite: The Effects of Antibodies on Stilbene Excited-State Energetics. Angew.Chem.Int.Ed.Engl., 45, 2006
2G5B	Crystal Structure of the anti-Bax monoclonal antibody 6A7 and a Bax peptide. Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 6A7 Fab Heavy Chain, 6A7 Fab Light Chain, ... Authors: Peyerl, F.W, Dai, S, Murphy, G.A, Marrack, P, Kappler, J.W. Deposit date: 2006-02-22 Release date: 2006-07-25 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Elucidation of some Bax conformational changes through crystallization of an antibody-peptide complex. Cell Death Differ., 14, 2007
2DF3	The structure of Siglec-7 in complex with alpha(2,3)/alpha(2,6) disialyl lactotetraosyl 2-(trimethylsilyl)ethyl Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CYSTEINE, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Attrill, H. Deposit date: 2006-02-23 Release date: 2006-06-20 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.9 Å) Cite: The structure of siglec-7 in complex with sialosides: leads for rational structure-based inhibitor design Biochem.J., 397, 2006
2G60	Structure of anti-FLAG M2 Fab domain Descriptor: anti-FLAG M2 Fab heavy chain, anti-FLAG M2 Fab light chain Authors: Roosild, T.P. Deposit date: 2006-02-23 Release date: 2006-09-12 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structure of anti-FLAG M2 Fab domain and its use in the stabilization of engineered membrane proteins. Acta Crystallogr.,Sect.F, 62, 2006
2G5R	Crystal structure of Siglec-7 in complex with methyl-9-(aminooxalyl-amino)-9-deoxyNeu5Ac (oxamido-Neu5Ac) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CYSTEINE, Sialic acid-binding Ig-like lectin 7, ... Authors: Attrill, H, Crocker, P.R, van Aalten, D.M. Deposit date: 2006-02-23 Release date: 2006-06-20 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.6 Å) Cite: The structure of siglec-7 in complex with sialosides: leads for rational structure-based inhibitor design. Biochem.J., 397, 2006
2GHW	Crystal structure of SARS spike protein receptor binding domain in complex with a neutralizing antibody, 80R Descriptor: CHLORIDE ION, Spike glycoprotein, anti-sars scFv antibody, ... Authors: Hwang, W.C, Lin, Y, Santelli, E, Sui, J, Jaroszewski, L, Stec, B, Farzan, M, Marasco, W.A, Liddington, R.C. Deposit date: 2006-03-27 Release date: 2006-09-19 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural basis of neutralization by a human anti-severe acute respiratory syndrome spike protein antibody, 80R. J.Biol.Chem., 281, 2006
2GK2	Crystal structure of the N terminal domain of human CEACAM1 Descriptor: Carcinoembryonic antigen-related cell adhesion molecule 1, GLYCEROL, NICKEL (II) ION Authors: Fedarovich, A, Tomberg, J, Nicholas, R.A, Davies, C. Deposit date: 2006-03-31 Release date: 2006-09-05 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure of the N-terminal domain of human CEACAM1: binding target of the opacity proteins during invasion of Neisseria meningitidis and N. gonorrhoeae. Acta Crystallogr.,Sect.D, 62, 2006
2GJZ	Structure of Catalytic Elimination Antibody 13G5 from a crystal in space group P2(1) Descriptor: Catalytic elimination antibody 13G5 heavy chain, Catalytic elimination antibody 13G5 light chain, ZINC ION Authors: Debler, E.W, Wilson, I.A. Deposit date: 2006-03-31 Release date: 2007-02-06 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Bifunctional Catalysis of Proton Transfer at an Antibody Active Site. J.Am.Chem.Soc., 129, 2007
2GK0	Structure of Catalytic Elimination Antibody 13G5 from a twinned crystal in space group C2 Descriptor: Catalytic elimination antibody 13G5 heavy chain, Catalytic elimination antibody 13G5 light chain Authors: Debler, E.W, Wilson, I.A. Deposit date: 2006-03-31 Release date: 2007-02-06 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Bifunctional Catalysis of Proton Transfer at an Antibody Active Site. J.Am.Chem.Soc., 129, 2007
2GKI	Heavy and light chain variable single domains of an anti-DNA binding antibody hydrolyze both double- and single-stranded DNAs without sequence specificity Descriptor: nuclease Authors: Kim, Y.R, Kim, J.S, Lee, S.H, Lee, W.R, Sohn, J.N, Chung, Y.C, Shim, H.K, Lee, S.C, Kwon, M.H, Kim, Y.S. Deposit date: 2006-04-02 Release date: 2006-04-18 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.88 Å) Cite: Heavy and light chain variable single domains of an anti-DNA binding antibody hydrolyze both double- and single-stranded DNAs without sequence specificity. J.Biol.Chem., 281, 2006
2CJU	Crystal structure of the TEPC15-Vk45.1 anti-2-phenyl-5-oxazolone NQ16- 113.8 scFv in complex with phOxGABA Descriptor: 4-{[(Z)-(5-OXO-2-PHENYL-1,3-OXAZOL-4(5H)-YLIDENE)METHYL]AMINO}BUTANOIC ACID, NQ16-113.8 ANTI-PHOX ANTIBODY Authors: Scotti, C, Gherardi, E. Deposit date: 2006-04-09 Release date: 2006-06-20 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural Basis of Affinity Maturation of the Tepc15/V(Kappa)45.1 Anti-2-Phenyl-5-Oxazolone Antibodies. J.Mol.Biol., 359, 2006
2DKS	Solution structure of the first IG-like domain of human carcinoembryonic antigen related cell adhesion molecule 8 Descriptor: Carcinoembryonic antigen-related cell adhesion molecule 8 Authors: Nagashima, K, Hayashi, F, Yoshida, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-04-14 Release date: 2007-05-01 Last modified: 2022-03-09 Method: SOLUTION NMR Cite: Solution structure of the first IG-like domain of human carcinoembryonic antigen related cell adhesion molecule 8 To be Published
2GSI	Crystal Structure of a Murine Fab in Complex with an 11 Residue Peptide Derived from Staphylococcal Nuclease Descriptor: Immunoglobulin (gamma) heavy chain (VH + CH1 fragment), Immunoglobulin (kappa) light chain, SODIUM ION, ... Authors: Armstrong, A.A, Amzel, L.M. Deposit date: 2006-04-26 Release date: 2006-05-16 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.81 Å) Cite: Crystal Structure of a Murine Fab in Complex with an 11 Residue Peptide Derived from Staphylococcal Nuclease To be Published
2H2P	Crystal structure of CLC-ec1 in complex with Fab fragment in SeCN- Descriptor: CLC Cl transporter, FAB fragment, heavy chain, ... Authors: Nguitragool, W, Miller, C. Deposit date: 2006-05-19 Release date: 2006-05-30 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Uncoupling of a CLC Cl(-)/H(+) Exchange Transporter by Polyatomic Anions J.Mol.Biol., 362, 2006
2H2S	Crystal Structure of E148A mutant of CLC-ec1 in SeCN- Descriptor: CLC Cl transporter, FAB fragment, heavy chain, ... Authors: Nguitragool, W, Miller, C. Deposit date: 2006-05-19 Release date: 2006-05-30 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Uncoupling of a CLC Cl(-)/H(+) Exchange Transporter by Polyatomic Anions J.Mol.Biol., 362, 2006
2H32	Crystal structure of the pre-B cell receptor Descriptor: Immunoglobulin heavy chain, Immunoglobulin iota chain, Immunoglobulin omega chain, ... Authors: Bankovich, A.J. Deposit date: 2006-05-22 Release date: 2007-04-24 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural Insight into Pre-B Cell Receptor Function Science, 316, 2007
2H3N	Crystal structure of a surrogate light chain (LAMBDA5 and VpreB) homodimer Descriptor: Ig lambda-5, VpreB protein Authors: Bankovich, A.J, Garcia, K.C. Deposit date: 2006-05-22 Release date: 2007-05-08 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural insight into pre-B cell receptor function Science, 316, 2007
2DQF	Crystal structure of hyhel-10 FV mutant (y33ay53a) complexed with hen egg lysozyme Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region Authors: Shiroishi, M, Kondo, H, Tsumoto, K, Kumagai, I. Deposit date: 2006-05-25 Release date: 2007-01-23 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL J.Biol.Chem., 282, 2007
2DQC	Crystal structure of hyhel-10 FV mutant(Hy33f) complexed with hen egg lysozyme Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region Authors: Shiroishi, M, Kondo, H, Tsumoto, K, Kumagai, I. Deposit date: 2006-05-25 Release date: 2007-01-23 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL J.Biol.Chem., 282, 2007
2DQD	Crystal structure of hyhel-10 FV mutant (Hy50f) complexed with hen egg lysozyme Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region Authors: Shiroishi, M, Kondo, H, Tsumoto, K, Kumagai, I. Deposit date: 2006-05-25 Release date: 2007-01-23 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL J.Biol.Chem., 282, 2007
2DQE	Crystal structure of hyhel-10 FV mutant (Hy53a) complexed with hen egg lysozyme Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region Authors: Shiroishi, M, Kondo, H, Tsumoto, K, Kumagai, I. Deposit date: 2006-05-25 Release date: 2007-01-23 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL J.Biol.Chem., 282, 2007
2DQU	Crystal form II: high resolution crystal structure of the complex of the hydrolytic antibody Fab 6D9 and a transition-state analog Descriptor: IMMUNOGLOBULIN 6D9, [1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER Authors: Kristensen, O, Vassylyev, D.G, Tanaka, F, Ito, N, Morikawa, K, Fujii, I. Deposit date: 2006-05-30 Release date: 2006-06-20 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Thermodynamic and structural basis for transition-state stabilization in antibody-catalyzed hydrolysis J.Mol.Biol., 369, 2007
2DQT	High resolution crystal structure of the complex of the hydrolytic antibody Fab 6D9 and a transition-state analog Descriptor: IMMUNOGLOBULIN 6D9, [1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER Authors: Kristensen, O, Vassylyev, D.G, Tanaka, F, Ito, N, Morikawa, K, Fujii, I. Deposit date: 2006-05-30 Release date: 2006-06-20 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Thermodynamic and structural basis for transition-state stabilization in antibody-catalyzed hydrolysis J.Mol.Biol., 369, 2007

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