PDB: 1344 resultsInfo pagesStatus searchChemie searchBIRD

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8IFC	Arbekacin-bound E.coli 70S ribosome in the PURE system Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Tomono, J, Asano, K, Chiashi, T, Tanaka, Y, Yokoyama, T. Deposit date: 2023-02-17 Release date: 2024-02-14 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside. J.Biochem., 2024
8IFB	Dibekacin-bound E.coli 70S ribosome in the PURE system Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Tomono, J, Asano, K, Chiashi, T, Tanaka, Y, Yokoyama, T. Deposit date: 2023-02-17 Release date: 2024-02-14 Method: ELECTRON MICROSCOPY (2.43 Å) Cite: Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside. J.Biochem., 2024
8I7J	Yeast 40S-eIF4B - partially open conformation of the 40S head Descriptor: 40S ribosomal protein S0, 40S ribosomal protein S1, 40S ribosomal protein S12, ... Authors: Datey, A, Khaja, F.T, Hussain, T. Deposit date: 2023-01-31 Release date: 2024-02-07 Method: ELECTRON MICROSCOPY (4.6 Å) Cite: Yeast eukaryotic initiation factor 4B remodels the mRNA entry site on the small ribosomal subunit To Be Published
8HU1	E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Akiyama, N, Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T. Deposit date: 2022-12-22 Release date: 2024-04-03 Last modified: 2024-04-10 Method: ELECTRON MICROSCOPY (2.69 Å) Cite: Structural insights into the decoding capability of isoleucine tRNAs with lysidine and agmatidine. Nat.Struct.Mol.Biol., 2024
8HTZ	E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Akiyama, N, Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T. Deposit date: 2022-12-22 Release date: 2024-04-03 Last modified: 2024-04-10 Method: ELECTRON MICROSCOPY (2.4 Å) Cite: Structural insights into the decoding capability of isoleucine tRNAs with lysidine and agmatidine. Nat.Struct.Mol.Biol., 2024
8HSP	E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Akiyama, N, Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T. Deposit date: 2022-12-20 Release date: 2024-04-03 Last modified: 2024-04-10 Method: ELECTRON MICROSCOPY (2.32 Å) Cite: Structural insights into the decoding capability of isoleucine tRNAs with lysidine and agmatidine. Nat.Struct.Mol.Biol., 2024
8HL5	Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome Descriptor: 16S rRNA (1493-MER), 23S rRNA (2991-MER), 30S ribosomal protein S10, ... Authors: Wang, Y.H, Zhou, J. Deposit date: 2022-11-28 Release date: 2023-10-04 Method: ELECTRON MICROSCOPY (5.72 Å) Cite: Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome To Be Published
8HL4	Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome Descriptor: 16s rRNA (1493-MER), 23s rRNA (3000-MER), 30S ribosomal protein S10, ... Authors: Wang, Y.H, Zhou, J. Deposit date: 2022-11-28 Release date: 2023-11-29 Method: ELECTRON MICROSCOPY (4.62 Å) Cite: Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome To Be Published
8HL3	Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome Descriptor: 16s rRNA (1493-MER), 23s rRNA (3000-MER), 30S ribosomal protein S10, ... Authors: Wang, Y.H, Zhou, J. Deposit date: 2022-11-28 Release date: 2023-09-20 Last modified: 2024-04-03 Method: ELECTRON MICROSCOPY (4.8 Å) Cite: Cryo-electron microscopy structure and translocation mechanism of the crenarchaeal ribosome. Nucleic Acids Res., 51, 2023
8HL2	Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome Descriptor: 16s rRNA (1493-MER), 23s rRNA (3000-MER), 30S ribosomal protein S10, ... Authors: Wang, Y.H, Zhou, J. Deposit date: 2022-11-28 Release date: 2023-09-20 Last modified: 2024-04-03 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Cryo-electron microscopy structure and translocation mechanism of the crenarchaeal ribosome. Nucleic Acids Res., 51, 2023
8HL1	Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome Descriptor: 16s rRNA (1493-MER), 23s rRNA (3000-MER), 30S ribosomal protein S10, ... Authors: Wang, Y.H, Zhou, J. Deposit date: 2022-11-28 Release date: 2024-01-17 Method: ELECTRON MICROSCOPY (3.93 Å) Cite: Cryo-electron microscopy structure and translocation mechanism of the crenarchaeal ribosome. Nucleic Acids Res., 51, 2023
8HKZ	Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome Descriptor: 16S rRNA (1493-MER), 23S rRNA (2996-MER), 30S ribosomal protein S10, ... Authors: Wang, Y.H, Zhou, J. Deposit date: 2022-11-28 Release date: 2023-08-30 Last modified: 2023-10-11 Method: ELECTRON MICROSCOPY (4.78 Å) Cite: Cryo-electron microscopy structure and translocation mechanism of the crenarchaeal ribosome. Nucleic Acids Res., 51, 2023
8HKY	Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Wang, Y.H, Zhou, J. Deposit date: 2022-11-28 Release date: 2023-08-30 Method: ELECTRON MICROSCOPY (4.45 Å) Cite: Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome To Be Published
8HKX	Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome Descriptor: 16s rRNA (1491-MER), 30S ribosomal protein, 30S ribosomal protein S10, ... Authors: Wang, Y.H, Zhou, J. Deposit date: 2022-11-28 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (3.14 Å) Cite: Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome To Be Published
8GLP	mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure) Descriptor: 1,4-DIAMINOBUTANE, 18S rRNA, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ... Authors: Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Watson, Z.L, Altman, R.B, Blanchard, S.C. Deposit date: 2023-03-22 Release date: 2023-04-19 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (1.67 Å) Cite: mRNA decoding in human is kinetically and structurally distinct from bacteria. Nature, 617, 2023
8GHU	Methyltransferase RmtC bound to the 30S ribosomal subunit Descriptor: 16S rRNA, 16S rRNA (guanine(1405)-N(7))-methyltransferase, 30S ribosomal protein S12, ... Authors: Srinivas, P, Conn, G.L, Dunham, C.M. Deposit date: 2023-03-12 Release date: 2023-04-12 Method: ELECTRON MICROSCOPY (3 Å) Cite: 30S subunit recognition and G1405 modification by the aminoglycoside-resistance 16S ribosomal RNA methyltransferase RmtC. Biorxiv, 2023
8G7S	Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV) Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... Authors: Rybak, M.Y, Gagnon, M.G. Deposit date: 2023-02-16 Release date: 2024-03-06 Last modified: 2024-04-10 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance. Nat.Struct.Mol.Biol., 2024
8G7R	Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III) Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... Authors: Rybak, M.Y, Gagnon, M.G. Deposit date: 2023-02-16 Release date: 2024-03-06 Last modified: 2024-04-10 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance. Nat.Struct.Mol.Biol., 2024
8G7Q	Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II) Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... Authors: Rybak, M.Y, Gagnon, M.G. Deposit date: 2023-02-16 Release date: 2024-03-06 Last modified: 2024-04-10 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance. Nat.Struct.Mol.Biol., 2024
8G7P	Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the cognate AUA codon (Structure I) Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... Authors: Rybak, M.Y, Gagnon, M.G. Deposit date: 2023-02-16 Release date: 2024-03-06 Last modified: 2024-04-10 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance. Nat.Struct.Mol.Biol., 2024
8G6W	Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe Descriptor: 16S rRNA, 2-AMINO-BENZAMIDE, 23S rRNA, ... Authors: Majumdar, C, Cate, J.H.D. Deposit date: 2023-02-16 Release date: 2023-04-05 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.02 Å) Cite: Aminobenzoic Acid Derivatives Obstruct Induced Fit in the Catalytic Center of the Ribosome. Acs Cent.Sci., 9, 2023
8G6J	mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2) Descriptor: (3R,6R,9S,12S,15S,18S,20R,24aR)-6-[(2S)-butan-2-yl]-3,12-bis[(1R)-1-hydroxy-2-methylpropyl]-8,9,11,17,18-pentamethyl-15-[(2S)-2-methylbutyl]hexadecahydropyrido[1,2-a][1,4,7,10,13,16,19]heptaazacyclohenicosine-1,4,7,10,13,16,19(21H)-heptone, (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine, 1,4-DIAMINOBUTANE, ... Authors: Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Altman, R.B, Blanchard, S.C. Deposit date: 2023-02-15 Release date: 2023-04-19 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: mRNA decoding in human is kinetically and structurally distinct from bacteria. Nature, 617, 2023
8G61	mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state) Descriptor: 1,4-DIAMINOBUTANE, 18S rRNA, 28S rRNA, ... Authors: Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Altman, R.B, Blanchard, S.C. Deposit date: 2023-02-14 Release date: 2023-04-19 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.94 Å) Cite: mRNA decoding in human is kinetically and structurally distinct from bacteria. Nature, 617, 2023
8G60	mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state) Descriptor: 1,4-DIAMINOBUTANE, 18S rRNA, 28S rRNA, ... Authors: Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Altman, R.B, Blanchard, S.C. Deposit date: 2023-02-14 Release date: 2023-04-19 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.54 Å) Cite: mRNA decoding in human is kinetically and structurally distinct from bacteria. Nature, 617, 2023
8G5Z	mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state) Descriptor: 1,4-DIAMINOBUTANE, 18S rRNA, 28S rRNA, ... Authors: Holm, M, Natchiar, K.S, Rundlet, E.J, Myasnikov, A.G, Altman, R.B, Blanchard, S.C. Deposit date: 2023-02-14 Release date: 2023-04-19 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.64 Å) Cite: mRNA decoding in human is kinetically and structurally distinct from bacteria. Nature, 617, 2023

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