PDB: 68 件ウェブページステータス検索Chemie searchBIRD

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4QBF	Crystal structure of a stable adenylate kinase variant AKlse2 分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, ZINC ION 著者 Moon, S, Bae, E. 登録日 2014-05-08 公開日 2014-06-25 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Effectiveness and limitations of local structural entropy optimization in the thermal stabilization of mesophilic and thermophilic adenylate kinases. Proteins, 82, 2014
2EU8	Crystal structure of a thermostable mutant of Bacillus subtilis Adenylate Kinase (Q199R) 分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, CALCIUM ION, ... 著者 Chen, S, Shamoo, Y. 登録日 2005-10-28 公開日 2006-06-27 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 In vivo molecular evolution reveals biophysical origins of organismal fitness. Mol.Cell, 22, 2006
3DKV	Crystal structure of adenylate kinase variant AKlse1 分子名称: 1,2-ETHANEDIOL, Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, ... 著者 Bannen, R.M, Bianchetti, C.M, Bingman, C.A, Bitto, E.B. 登録日 2008-06-26 公開日 2009-06-09 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.82 Å) 主引用文献 Crystal structure of adenylate kinase variant AKlse1. To be Published
6ZJB	Crystal structure of human adenylate kinase 3, AK3, in complex with inhibitor Gp5A 分子名称: GTP:AMP phosphotransferase AK3, mitochondrial, MAGNESIUM ION, ... 著者 Grundstrom, C, Rogne, P, Wolf-Watz, M, Sauer-Eriksson, A.E. 登録日 2020-06-28 公開日 2020-09-16 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.822 Å) 主引用文献 Structural Basis for GTP versus ATP Selectivity in the NMP Kinase AK3. Biochemistry, 59, 2020
2AK3	THE THREE-DIMENSIONAL STRUCTURE OF THE COMPLEX BETWEEN MITOCHONDRIAL MATRIX ADENYLATE KINASE AND ITS SUBSTRATE AMP AT 1.85 ANGSTROMS RESOLUTION 分子名称: ADENOSINE MONOPHOSPHATE, ADENYLATE KINASE ISOENZYME-3, SULFATE ION 著者 Diederichs, K, Schulz, G.E. 登録日 1995-03-07 公開日 1995-05-08 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 The refined structure of the complex between adenylate kinase from beef heart mitochondrial matrix and its substrate AMP at 1.85 A resolution. J.Mol.Biol., 217, 1991
1E4Y	Mutant P9L of adenylate kinase from E. coli, modified in the Gly-loop 分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE 著者 Mueller, C.W, Schulz, G.E. 登録日 2000-07-12 公開日 2000-08-04 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Crystal structures of two mutants of adenylate kinase from Escherichia coli that modify the Gly-loop. Proteins, 15, 1993
1E4V	Mutant G10V of adenylate kinase from E. coli, modified in the Gly-loop 分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE 著者 Mueller, C.W, Schulz, G.E. 登録日 2000-07-12 公開日 2000-08-04 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Crystal structures of two mutants of adenylate kinase from Escherichia coli that modify the Gly-loop. Proteins, 15, 1993
1ZIP	BACILLUS STEAROTHERMOPHILUS ADENYLATE KINASE 分子名称: ADENYLATE KINASE, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MANGANESE (II) ION, ... 著者 Berry, M.B, Phillips Jr, G.N. 登録日 1997-05-07 公開日 1997-08-20 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Crystal structures of Bacillus stearothermophilus adenylate kinase with bound Ap5A, Mg2+ Ap5A, and Mn2+ Ap5A reveal an intermediate lid position and six coordinate octahedral geometry for bound Mg2+ and Mn2+. Proteins, 32, 1998
5EJE	Crystal structure of E. coli Adenylate kinase G56C/T163C double mutant in complex with Ap5a 分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, COBALT (II) ION 著者 Sauer, U.H, Kovermann, M, Grundstrom, C, Wolf-Watz, M, Sauer-Eriksson, A.E. 登録日 2015-11-01 公開日 2016-11-09 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural basis for ligand binding to an enzyme by a conformational selection pathway. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
1P3J	Adenylate Kinase from Bacillus subtilis 分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ... 著者 Bae, E, Phillips Jr, G.N. 登録日 2003-04-17 公開日 2004-05-04 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structures and analysis of highly homologous psychrophilic, mesophilic, and thermophilic adenylate kinases. J.Biol.Chem., 279, 2004
1AK2	ADENYLATE KINASE ISOENZYME-2 分子名称: ADENYLATE KINASE ISOENZYME-2, SULFATE ION 著者 Schlauderer, G.J, Schulz, G.E. 登録日 1995-12-29 公開日 1996-06-10 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 The structure of bovine mitochondrial adenylate kinase: comparison with isoenzymes in other compartments. Protein Sci., 5, 1996
2AKY	HIGH-RESOLUTION STRUCTURES OF ADENYLATE KINASE FROM YEAST LIGATED WITH INHIBITOR AP5A, SHOWING THE PATHWAY OF PHOSPHORYL TRANSFER 分子名称: ADENYLATE KINASE, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION 著者 Abele, U, Schulz, G.E. 登録日 1995-07-28 公開日 1995-11-14 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 High-resolution structures of adenylate kinase from yeast ligated with inhibitor Ap5A, showing the pathway of phosphoryl transfer. Protein Sci., 4, 1995
1ZIO	PHOSPHOTRANSFERASE 分子名称: ADENYLATE KINASE, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ... 著者 Berry, M.B, Phillips Jr, G.N. 登録日 1996-06-07 公開日 1997-07-07 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Crystal structures of Bacillus stearothermophilus adenylate kinase with bound Ap5A, Mg2+ Ap5A, and Mn2+ Ap5A reveal an intermediate lid position and six coordinate octahedral geometry for bound Mg2+ and Mn2+. Proteins, 32, 1998
1AKE	STRUCTURE OF THE COMPLEX BETWEEN ADENYLATE KINASE FROM ESCHERICHIA COLI AND THE INHIBITOR AP5A REFINED AT 1.9 ANGSTROMS RESOLUTION: A MODEL FOR A CATALYTIC TRANSITION STATE 分子名称: ADENYLATE KINASE, BIS(ADENOSINE)-5'-PENTAPHOSPHATE 著者 Mueller, C.W, Schulz, G.E. 登録日 1991-11-08 公開日 1994-01-31 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of the complex between adenylate kinase from Escherichia coli and the inhibitor Ap5A refined at 1.9 A resolution. A model for a catalytic transition state. J.Mol.Biol., 224, 1992
5X6I	Crystal structure of B. subtilis adenylate kinase variant 分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, CALCIUM ION, ... 著者 Moon, S, Bae, E. 登録日 2017-02-22 公開日 2018-02-28 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural and mutational analyses of psychrophilic and mesophilic adenylate kinases highlight the role of hydrophobic interactions in protein thermal stability. Struct Dyn., 6, 2019
1ANK	THE CLOSED CONFORMATION OF A HIGHLY FLEXIBLE PROTEIN: THE STRUCTURE OF E. COLI ADENYLATE KINASE WITH BOUND AMP AND AMPPNP 分子名称: ADENOSINE MONOPHOSPHATE, ADENYLATE KINASE, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER 著者 Berry, M.B, Meador, B, Bilderback, T, Liang, P, Glaser, M, Phillips Jr, G.N. 登録日 1994-02-28 公開日 1994-05-31 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The closed conformation of a highly flexible protein: the structure of E. coli adenylate kinase with bound AMP and AMPPNP. Proteins, 19, 1994
3FB4	Crystal structure of adenylate kinase from Marinibacillus marinus 分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, ZINC ION 著者 Davlieva, M.G, Shamoo, Y. 登録日 2008-11-18 公開日 2009-09-29 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure and biochemical characterization of an adenylate kinase originating from the psychrophilic organism Marinibacillus marinus. Acta Crystallogr.,Sect.F, 65, 2009
3HPQ	Crystal structure of wild-type adenylate kinase from E. coli, in complex with Ap5A 分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE 著者 Hilser, V.J, Travis, T.P, Bolen, D.W. 登録日 2009-06-04 公開日 2009-11-03 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Rational modulation of conformational fluctuations in adenylate kinase reveals a local unfolding mechanism for allostery and functional adaptation in proteins. Proc.Natl.Acad.Sci.USA, 106, 2009
3HPR	Crystal structure of V148G adenylate kinase from E. coli, in complex with Ap5A 分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE 著者 Hilser, V.J, Travis, T.P, Bolen, D.W. 登録日 2009-06-04 公開日 2009-11-03 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Rational modulation of conformational fluctuations in adenylate kinase reveals a local unfolding mechanism for allostery and functional adaptation in proteins. Proc.Natl.Acad.Sci.USA, 106, 2009
4NP6	Crystal Structure of Adenylate Kinase from Vibrio cholerae O1 biovar eltor 分子名称: Adenylate kinase 著者 Kim, Y, Zhou, M, Grimshaw, S, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) 登録日 2013-11-20 公開日 2013-12-18 最終更新日 2017-11-22 実験手法 X-RAY DIFFRACTION (2.004 Å) 主引用文献 Crystal Structure of Adenylate Kinase from Vibrio cholerae O1 biovar eltor To be Published
4K46	Crystal Structure of Adenylate Kinase from Photobacterium profundum 分子名称: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, Adenylate kinase, ... 著者 Cho, Y.-J, Kerns, S.J, Kern, D. 登録日 2013-04-12 公開日 2014-07-16 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.01 Å) 主引用文献 Alike but Different: Adenylate kinases from E. Coli, Aquifex, and P. profundum To be Published
2BBW	Crystal structure of human adenylate kinase 4 (AK4) in complex with diguanosine pentaphosphate 分子名称: DIGUANOSINE-PENTAPHOSPHATE, adenylate kinase 4, AK4 著者 Filippakopoulos, P, Turnbull, A.P, Fedorov, O, Weigelt, J, Bunkoczi, G, Ugochukwu, E, Debreczeni, J, Niesen, F, von Delft, F, Edwards, A, Arrowsmith, C, Sundstrom, M, Knapp, S, Structural Genomics Consortium (SGC) 登録日 2005-10-17 公開日 2005-12-06 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Crystal structure of human adenylate kinase 4 (AK4) in complex with diguanosine pentaphosphate To be Published
8BQF	Adenylate Kinase L107I MUTANT 分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE 著者 Scheerer, D, Adkar, B.V, Bhattacharyya, S, Levy, D, Iljina, M, Iljina, I, Dym, O, Haran, G, Shakhnovich, E.I. 登録日 2022-11-21 公開日 2023-05-10 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Allosteric communication between ligand binding domains modulates substrate inhibition in adenylate kinase. Proc.Natl.Acad.Sci.USA, 120, 2023
4X8O	Crystal structure of E. coli Adenylate kinase Y171W mutant in complex with inhibitor Ap5a 分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ... 著者 Sauer-Eriksson, A.E, Kovermann, M, Aden, J, Grundstrom, C, Wolf-Watz, M, Sauer, U.H. 登録日 2014-12-10 公開日 2015-07-15 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural basis for catalytically restrictive dynamics of a high-energy enzyme state. Nat Commun, 6, 2015
5X6J	Crystal structure of B. globisporus adenylate kinase variant 分子名称: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, ZINC ION 著者 Moon, S, Bae, E. 登録日 2017-02-22 公開日 2018-02-28 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural and mutational analyses of psychrophilic and mesophilic adenylate kinases highlight the role of hydrophobic interactions in protein thermal stability. Struct Dyn., 6, 2019

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