PDB: 125 件ウェブページステータス検索Chemie searchBIRD

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8GJ0	E. coli clamp loader with open clamp on primed template DNA (form 1) 分子名称: ADENOSINE-5'-DIPHOSPHATE, Beta sliding clamp, DNA polymerase III subunit delta, ... 著者 Oakley, A.J, Xu, Z.-Q, Dixon, N.E. 登録日 2023-03-14 公開日 2024-03-27 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural characterisation of the complete cycle of sliding clamp loading in E. coli To Be Published
5FRQ	Crystal Structure of Helicobacter pylori beta clamp bound to DNA ligase peptide 分子名称: DNA LIGASE, DNA POLYMERASE III SUBUNIT BETA 著者 Pandey, P, Gourinath, S. 登録日 2015-12-21 公開日 2016-08-17 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structural Insight Into Beta-Clamp and its Interaction with DNA Ligase in Helicobacter Pylori Sci.Rep., 6, 2016
1JQJ	Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of the beta-delta complex 分子名称: DNA polymerase III, beta chain, delta subunit 著者 Jeruzalmi, D, Yurieva, O, Zhao, Y, Young, M, Stewart, J, Hingorani, M, O'Donnell, M, Kuriyan, J. 登録日 2001-08-07 公開日 2001-11-07 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III. Cell(Cambridge,Mass.), 106, 2001
7AZG	DNA polymerase sliding clamp from Escherichia coli with peptide 4 bound 分子名称: Beta sliding clamp, Peptide 4 著者 Monsarrat, C, Compain, G, Andre, C, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Brillet, K, Landolfo, M, Silva da Veiga, C, Wagner, J, Guichard, G, Burnouf, D.Y. 登録日 2020-11-16 公開日 2021-12-01 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.92 Å) 主引用文献 Iterative Structure-Based Optimization of Short Peptides Targeting the Bacterial Sliding Clamp. J.Med.Chem., 64, 2021
6AP4	Crystal structure of the DNA polymerase III subunit beta from Acinetobacter baumannii 分子名称: DNA polymerase III subunit beta, MAGNESIUM ION 著者 McGrath, A.E, Oakley, A.J. 登録日 2017-08-16 公開日 2017-12-20 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Crystal structures and biochemical characterization of DNA sliding clamps from three Gram-negative bacterial pathogens. J. Struct. Biol., 204, 2018
8VAP	Structure of the E. coli clamp loader bound to the beta clamp in a Fully-Open conformation 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... 著者 Landeck, J.T, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
8GJ1	E. coli clamp loader with open clamp on primed template DNA (form 2) 分子名称: ADENOSINE-5'-DIPHOSPHATE, Beta sliding clamp, DNA polymerase III subunit delta, ... 著者 Oakley, A.J, Xu, Z.-Q, Dixon, N.E. 登録日 2023-03-14 公開日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural characterisation of the complete cycle of sliding clamp loading in E. coli To Be Published
3RB9	Crystal structure of the M. tuberculosis beta clamp 分子名称: DNA polymerase III subunit beta 著者 Kukshal, V, Ramachandran, R. 登録日 2011-03-29 公開日 2012-04-04 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 M. tuberculosis Sliding beta-Clamp Does Not Interact Directly with the NAD(+)-Dependent DNA Ligase Plos One, 7, 2012
6PTH	Crystal structure of a DnaN sliding clamp (DNA polymerase III subunit beta) from Pseudomonas aeruginosa bound to griselimycin 分子名称: Beta sliding clamp, Griselimycin, SULFATE ION 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2019-07-15 公開日 2019-08-07 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.05 Å) 主引用文献 Crystal structure of a DnaN sliding clamp (DNA polymerase III subunit beta) from Pseudomonas aeruginosa bound to griselimycin To Be Published
6FVN	DNA polymerase sliding clamp from Mycobacterium tuberculosis with bound P7 peptide 分子名称: Beta sliding clamp, P7 peptide 著者 Martiel, I, Andre, C, Olieric, V, Guichard, G, Burnouf, D. 登録日 2018-03-04 公開日 2019-04-10 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.142 Å) 主引用文献 Peptide Interactions on Bacterial Sliding Clamps. Acs Infect Dis., 2019
8VAT	Structure of the E. coli clamp loader bound to the beta clamp in a Open-RNAp/t conformation 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... 著者 Landeck, J.T, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
8DKD	Sliding clamp from M. thermoresistibile 分子名称: Beta sliding clamp 著者 Kapur, M.K, Gray, O.J, Honzatko, R.H, Nelson, S.N. 登録日 2022-07-05 公開日 2023-01-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Interaction of sliding clamp with mycobacterial polymerases To Be Published
7EVP	Cryo-EM structure of the Gp168-beta-clamp complex 分子名称: Beta sliding clamp, Sliding clamp inhibitor 著者 Liu, B, Li, S, Liu, Y, Chen, H, Hu, Z, Wang, Z, Gou, L, Zhang, L, Ma, B, Wang, H, Matthews, S, Wang, Y, Zhang, K. 登録日 2021-05-21 公開日 2022-02-16 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Bacteriophage Twort protein Gp168 is a beta-clamp inhibitor by occupying the DNA sliding channel. Nucleic Acids Res., 49, 2021
5X06	DNA replication regulation protein 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA polymerase III subunit beta, DnaA regulatory inactivator Hda, ... 著者 Kim, J, Cho, Y. 登録日 2017-01-20 公開日 2018-01-24 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.237 Å) 主引用文献 Replication regulation protein To Be Published
8VAL	Structure of the E. coli clamp loader bound to the beta clamp in a Open-DNAp/t conformation 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... 著者 Landeck, J.T, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
8GIY	E. coli clamp loader with closed clamp 分子名称: Beta sliding clamp, DNA polymerase III subunit delta, DNA polymerase III subunit delta', ... 著者 Oakley, A.J, Xu, Z.-Q, Dixon, N.E. 登録日 2023-03-14 公開日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structural characterisation of the complete cycle of sliding clamp loading in E. coli To Be Published
8VAQ	Structure of the E. coli clamp loader bound to the beta clamp in a Closed-DNA1 conformation 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... 著者 Landeck, J.T, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
8VAS	Structure of the E. coli clamp loader bound to the beta clamp in an Altered-Collar conformation 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... 著者 Landeck, J.T, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
8VAR	Structure of the E. coli clamp loader bound to the beta clamp in a Closed-DNA2 conformation 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... 著者 Landeck, J.T, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
8VAM	Structure of the E. coli clamp loader bound to the beta clamp in a Semi-Open conformation 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... 著者 Landeck, J.T, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
5M1S	Cryo-EM structure of the E. coli replicative DNA polymerase-clamp-exonuclase-theta complex bound to DNA in the editing mode 分子名称: DNA Primer Strand, DNA Template Strand, DNA polymerase III subunit alpha, ... 著者 Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H. 登録日 2016-10-10 公開日 2017-01-18 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (6.7 Å) 主引用文献 Self-correcting mismatches during high-fidelity DNA replication. Nat. Struct. Mol. Biol., 24, 2017
5FKW	cryo-EM structure of the E. coli replicative DNA polymerase complex bound to DNA (DNA polymerase III alpha, beta, epsilon) 分子名称: DNA POLYMERASE III ALPHA, DNA POLYMERASE III BETA, DNA POLYMERASE III EPSILON, ... 著者 Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H. 登録日 2015-10-20 公開日 2015-11-25 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (7.3 Å) 主引用文献 cryo-EM structures of theE. colireplicative DNA polymerase reveal its dynamic interactions with the DNA sliding clamp, exonuclease andtau. Elife, 4, 2015
8VAN	Structure of the E. coli clamp loader bound to the beta clamp in an Initial-Binding conformation 分子名称: Beta sliding clamp, DNA polymerase III subunit delta, DNA polymerase III subunit delta', ... 著者 Landeck, J.T, Pajak, J, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (7.7 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
5FKV	cryo-EM structure of the E. coli replicative DNA polymerase complex bound to DNA (DNA polymerase III alpha, beta, epsilon, tau complex) 分子名称: DNA POLYMERASE III BETA, DNA POLYMERASE III EPSILON, DNA POLYMERASE III SUBUNIT ALPHA, ... 著者 Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H. 登録日 2015-10-20 公開日 2015-11-25 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (8.04 Å) 主引用文献 cryo-EM structures of theE. colireplicative DNA polymerase reveal its dynamic interactions with the DNA sliding clamp, exonuclease andtau. Elife, 4, 2015
5FKU	cryo-EM structure of the E. coli replicative DNA polymerase complex in DNA free state (DNA polymerase III alpha, beta, epsilon, tau complex) 分子名称: DNA POLYMERASE III SUBUNIT ALPHA, DNA POLYMERASE III SUBUNIT BETA, DNA POLYMERASE III SUBUNIT EPSILON, ... 著者 Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H. 登録日 2015-10-20 公開日 2015-11-25 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (8.34 Å) 主引用文献 cryo-EM structures of theE. colireplicative DNA polymerase reveal its dynamic interactions with the DNA sliding clamp, exonuclease andtau. Elife, 4, 2015

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